Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 0.0e+00 1639.4 829 100.0
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 0.0e+00 1290.8 829 79.6
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 0.0e+00 1277.3 829 79.0
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 0.0e+00 1105.5 838 71.7
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.4e-286 987.3 818 65.5
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.1e-257 893.6 833 57.9
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 6.7e-255 884.4 833 57.7
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.2e-253 879.4 828 58.8
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 6.3e-253 877.9 833 57.9
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-252 877.1 867 56.9
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 4.8e-245 851.7 820 57.9
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 6.1e-224 781.6 818 53.7
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-220 770.8 797 54.6
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 9.2e-212 741.1 830 50.8
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.7e-211 739.6 789 51.3
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.0e-198 696.8 829 51.4
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.9e-197 692.2 862 48.4
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 4.1e-196 689.1 793 48.7
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.0e-194 684.5 840 48.0
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.4e-191 674.1 795 48.6
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 3.4e-190 669.5 833 46.7
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.3e-189 667.5 835 47.2
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 4.6e-179 632.5 843 44.8
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.0e-178 629.8 833 45.6
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.0e-178 629.8 803 47.7
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.1e-177 627.9 786 47.1
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 2.9e-173 613.2 859 45.6
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 3.5e-171 606.3 810 44.4
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.5e-169 600.1 788 44.7
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.3e-169 599.4 766 46.3
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.4e-169 598.6 798 43.2
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.5e-165 585.5 857 40.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 8.7e-162 575.1 831 41.8
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.4e-159 567.0 846 42.6
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.5e-158 564.3 827 42.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 3.4e-158 563.1 801 41.4
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.2e-157 560.5 799 41.4
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 6.5e-157 558.9 799 41.3
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.9e-156 557.4 852 41.7
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 7.2e-156 555.4 815 42.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 7.2e-156 555.4 823 42.4
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 9.3e-156 555.1 854 41.1
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 1.1e-153 548.1 818 40.3
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.5e-153 547.7 825 41.3
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.9e-153 547.4 813 42.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 3.7e-152 543.1 914 38.3
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.0e-150 537.3 826 41.6
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.0e-150 537.3 839 39.9
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 8.5e-149 531.9 726 46.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 3.6e-147 526.6 852 38.4
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.8e-146 524.2 821 39.7
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 3.9e-146 523.1 827 39.2
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 1.5e-145 521.2 825 39.3
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 5.7e-145 519.2 801 40.0
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 5.7e-145 519.2 822 39.1
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 2.2e-144 517.3 820 38.7
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.4e-143 514.6 992 35.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.8e-143 514.2 816 39.8
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 4.1e-143 513.1 848 38.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 6.1e-139 499.2 797 38.6
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.0e-138 498.4 954 35.8
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.8e-138 497.7 806 38.8
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 8.8e-138 495.4 796 39.1
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 9.7e-137 491.9 746 41.7
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 1.3e-136 491.5 805 38.1
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 2.8e-136 490.3 854 36.5
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 3.7e-136 490.0 813 38.4
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 3.7e-136 490.0 829 37.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.1e-135 488.4 825 38.3
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.6e-134 483.8 855 37.2
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 4.5e-134 483.0 794 37.3
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.7e-133 481.1 834 36.3
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.1e-132 478.4 935 36.1
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.9e-132 477.6 820 36.5
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 4.2e-132 476.5 830 36.5
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 9.4e-132 475.3 1016 33.9
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.3e-128 464.9 835 37.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 6.3e-128 462.6 931 35.3
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.0e-126 457.6 777 37.3
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.7e-126 457.2 845 37.4
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 3.8e-125 453.4 813 37.0
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.8e-125 453.4 928 35.5
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 5.0e-125 453.0 845 36.4
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 3.6e-123 446.8 838 35.6
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.2e-121 441.8 850 35.9
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 4.4e-121 439.9 814 35.3
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 9.8e-121 438.7 851 35.5
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.0e-115 419.1 976 33.5
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.4e-113 413.7 562 42.3
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 5.7e-113 412.9 840 34.9
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.2e-112 411.0 817 34.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.7e-109 401.4 824 34.8
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 6.1e-107 392.9 658 37.5
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 4.9e-104 383.3 828 34.1
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 7.0e-103 379.4 636 41.0
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.9e-101 373.6 835 32.8
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 4.0e-98 363.6 790 33.7
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.9e-93 347.1 870 32.9
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.6e-93 346.3 441 45.8
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 4.0e-90 337.0 870 31.0
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 4.1e-87 327.0 490 39.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 4.3e-84 317.0 564 35.8
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 7.3e-84 316.2 707 34.2
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.8e-82 311.6 628 35.5
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 6.8e-82 309.7 476 40.3
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 4.9e-80 303.5 564 36.2
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 9.2e-79 299.3 495 39.4
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.6e-78 298.5 465 41.3
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.5e-78 297.4 470 39.8
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 4.6e-78 297.0 800 31.4
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.9e-77 293.9 478 39.7
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.6e-75 288.5 624 33.7
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 8.1e-75 286.2 493 38.7
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 2.4e-74 284.6 661 32.8
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.2e-73 282.3 461 39.3
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 2.0e-73 281.6 471 38.9
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 2.0e-73 281.6 471 38.9
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 4.9e-72 276.9 484 39.0
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.4e-71 274.6 489 38.7
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.2e-70 272.3 482 38.6
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.3e-69 268.1 451 37.9
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.9e-69 267.3 786 29.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 5.1e-69 266.9 492 34.3
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.9e-68 265.0 596 32.4
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.3e-68 263.8 413 42.1
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 7.3e-68 263.1 511 34.2
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.3e-66 256.9 348 41.1
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.6e-65 254.6 403 36.2
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.9e-64 251.1 829 27.5
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.1e-63 249.2 469 37.3
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.4e-63 248.1 452 36.1
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 5.4e-63 246.9 828 27.4
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.4e-63 246.9 490 36.3
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 2.7e-62 244.6 418 35.2
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.7e-62 244.6 431 33.9
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.7e-62 244.6 436 33.9
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.3e-60 237.7 814 29.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.2e-59 233.4 441 35.1
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 5.8e-57 226.9 454 35.9
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.7e-54 218.0 293 45.7
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.5e-52 211.5 471 36.3
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.5e-49 202.2 487 31.0
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.7e-46 191.4 136 75.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 3.2e-39 167.9 489 27.8
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.6e-38 165.6 243 42.8
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.0e-33 148.7 193 46.1
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 9.4e-31 139.8 103 61.2
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.6e-30 139.0 864 22.6
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.9e-29 134.4 456 23.2
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.7e-27 127.9 402 31.3
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.8e-26 125.6 389 31.6
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 5.0e-24 117.5 100 51.0
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.0e-21 108.2 728 22.0
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.8e-19 100.9 80 55.0
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.4e-18 99.4 168 29.8
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.6e-12 78.6 77 40.3
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.3e-12 78.2 120 31.7
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 5.9e-09 67.4 83 39.8
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-08 65.5 79 38.0
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 5.0e-08 64.3 77 39.0
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 1.1e-07 63.2 58 53.4
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 7.2e-07 60.5 64 42.2
Lalb_Chr03g0038281 Lupinus albus HOM05D002415 ORTHO05D002522 1.6e-06 59.3 93 35.5
PRCOL_00006361 Prasinoderma coloniale HOM05D003353 ORTHO05D003751 3.6e-06 58.2 116 33.6
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 8.0e-06 57.0 58 32.8
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 8.0e-06 57.0 49 59.2


User provided reference genes

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