Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 6.0e-310 1066.6 519 100.0
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 2.5e-223 778.9 515 75.9
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 9.8e-212 740.3 514 73.9
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 1.3e-208 729.9 473 76.5
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 9.5e-199 697.2 484 74.0
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 2.4e-194 682.6 484 73.6
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 2.0e-180 636.3 477 70.2
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 4.2e-130 469.2 537 51.2
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.2e-113 414.5 566 45.4
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.4e-112 411.0 566 44.9
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 5.9e-108 395.6 534 44.9
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 4.3e-106 389.4 534 45.9
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 1.5e-103 380.9 450 50.0
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 9.8e-103 378.3 527 42.1
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 3.9e-99 366.3 512 42.6
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 3.9e-99 366.3 512 42.6
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.9e-98 364.0 522 43.1
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 6.8e-96 355.5 478 43.7
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 1.3e-94 351.3 487 41.3
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 6.4e-94 349.0 502 40.6
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 1.4e-93 347.8 492 42.5
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 1.9e-93 347.4 533 40.3
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 7.0e-93 345.5 522 41.0
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 7.0e-93 345.5 527 39.8
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.6e-92 344.4 473 44.4
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.0e-91 341.7 526 40.3
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.0e-91 341.7 507 40.0
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.1e-90 338.2 502 39.8
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.9e-90 337.4 526 41.3
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 9.5e-90 335.1 527 40.4
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 9.5e-90 335.1 434 44.5
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.4e-88 331.3 476 42.4
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 1.4e-88 331.3 441 44.4
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 6.8e-88 328.9 469 44.1
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 4.4e-87 326.2 335 50.4
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 4.4e-87 326.2 342 48.2
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.9e-86 323.6 544 41.0
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 7.1e-85 318.9 530 39.8
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 2.1e-84 317.4 466 41.2
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 2.7e-84 317.0 367 47.1
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 7.8e-84 315.5 372 46.2
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 3.0e-83 313.5 506 39.1
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 3.9e-83 313.2 403 44.7
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 3.9e-83 313.2 493 37.7
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 1.5e-82 311.2 524 38.2
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 1.5e-82 311.2 500 39.2
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 1.9e-82 310.8 532 39.8
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 5.6e-82 309.3 499 39.3
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 7.3e-82 308.9 492 41.5
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 1.6e-81 307.8 493 37.5
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 6.2e-81 305.8 491 38.1
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 4.0e-80 303.1 473 40.2
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 4.0e-80 303.1 453 41.1
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.2e-80 302.8 486 38.3
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 8.9e-80 302.0 493 39.1
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 8.9e-80 302.0 498 38.2
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 8.9e-80 302.0 543 40.3
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 1.2e-79 301.6 493 39.4
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 3.4e-79 300.1 473 40.0
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.4e-79 299.7 471 40.1
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.3e-78 298.1 441 42.2
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 2.9e-78 297.0 323 49.8
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 2.9e-78 297.0 481 40.3
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 3.8e-78 296.6 513 37.4
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 4.9e-78 296.2 543 37.6
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 4.9e-78 296.2 365 47.1
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 8.4e-78 295.4 505 37.4
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 1.4e-77 294.7 489 38.2
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 4.1e-77 293.1 317 48.6
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 5.4e-77 292.7 337 48.1
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 7.1e-77 292.4 479 40.1
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 9.2e-77 292.0 450 39.1
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 1.2e-76 291.6 523 37.3
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 1.6e-76 291.2 307 47.9
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 3.9e-75 286.6 486 37.7
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 5.1e-75 286.2 462 42.9
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.2e-73 281.6 472 39.4
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 1.4e-72 278.1 345 45.8
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 1.8e-72 277.7 454 39.6
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 2.4e-72 277.3 431 39.9
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 4.0e-72 276.6 537 35.9
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 6.9e-72 275.8 468 37.8
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 4.9e-70 269.6 562 33.6
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 8.4e-70 268.9 540 37.4
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 9.3e-69 265.4 499 36.5
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.0e-68 262.7 514 36.2
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.0e-67 261.9 496 36.7
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 1.3e-67 261.5 339 44.0
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 1.7e-67 261.2 488 37.7
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.1e-66 258.5 451 39.7
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 7.3e-66 255.8 331 45.3
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 1.3e-65 255.0 321 45.2
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 7.6e-63 245.7 323 44.9
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 1.7e-62 244.6 359 39.8
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.2e-62 244.2 402 41.0
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.1e-61 241.9 321 41.1
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 7.9e-60 235.7 275 44.0
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.9e-58 231.1 456 35.5
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 2.8e-57 227.3 312 39.7
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 4.8e-57 226.5 229 49.8
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.1e-56 225.3 243 48.6
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 1.4e-56 224.9 524 32.3
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 6.9e-56 222.6 290 42.1
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 4.9e-54 216.5 318 39.6
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 3.2e-53 213.8 312 36.5
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.2e-52 211.8 273 43.6
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 1.2e-52 211.8 544 31.4
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 7.9e-52 209.1 290 43.1
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.3e-49 201.8 148 62.8
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 4.8e-49 199.9 310 42.3
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 3.1e-48 197.2 234 45.3
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 5.3e-48 196.4 234 44.0
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 5.3e-48 196.4 234 44.0
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 6.9e-48 196.1 250 44.8
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 6.9e-48 196.1 345 37.4
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 6.9e-48 196.1 237 43.9
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 1.7e-46 191.4 258 42.6
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.8e-46 190.3 304 40.1
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 6.5e-46 189.5 250 43.2
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 8.4e-46 189.1 226 44.2
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 8.4e-46 189.1 226 44.2
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 3.2e-45 187.2 258 42.6
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 3.2e-45 187.2 244 42.2
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 4.2e-45 186.8 483 32.3
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 7.1e-45 186.0 302 34.8
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 2.1e-44 184.5 226 42.5
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 2.1e-44 184.5 226 42.5
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 7.9e-44 182.6 226 42.0
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 8.2e-41 172.6 175 48.6
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 2.0e-39 167.9 109 69.7
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 7.6e-39 166.0 118 66.1
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 2.9e-38 164.1 274 35.0
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 5.5e-37 159.8 201 43.8
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 4.3e-34 150.2 283 33.9
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 1.8e-32 144.8 249 36.5
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 8.5e-30 136.0 291 36.4
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.4e-29 135.2 483 29.0
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.4e-29 135.2 299 33.4
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 2.8e-25 120.9 408 27.0
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 9.1e-24 115.9 243 35.4
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 4.5e-23 113.6 187 35.8
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.4e-21 108.6 99 47.5
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 4.2e-21 107.1 307 30.9
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.6e-18 97.8 80 53.8
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 3.3e-18 97.4 159 34.6
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 3.7e-17 94.0 146 37.7
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 1.4e-16 92.0 132 37.9
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 9.1e-16 89.4 152 34.9
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.1e-16 89.4 152 34.9
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 7.7e-15 86.3 148 35.8
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 2.2e-14 84.7 149 36.2
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 9.4e-13 79.3 219 29.7
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 5.9e-07 60.1 80 38.8
Thhalv10018403m.g Eutrema salsugineum HOM05D004258 ORTHO05D005163 1.3e-06 58.9 180 26.7
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 2.9e-06 57.8 52 51.9
PSO675G4589 Papaver somniferum HOM05D007740 ORTHO05D009757 2.9e-06 57.8 52 46.2
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 8.5e-06 56.2 71 40.8


User provided reference genes

Program Settings