Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 5.0e-216 754.2 398 100.0
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.4e-162 576.6 443 74.5
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 1.3e-160 570.1 443 73.8
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 5.9e-124 448.4 474 60.1
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 7.7e-124 448.0 414 63.0
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 4.0e-112 409.1 352 66.2
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 2.6e-111 406.4 395 62.8
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 7.3e-98 361.7 365 62.2
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 1.4e-88 330.9 414 48.8
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 6.0e-84 315.5 413 47.2
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.9e-82 310.5 413 47.2
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.4e-80 304.3 417 45.1
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 4.9e-78 295.8 412 44.4
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 5.4e-77 292.4 410 46.1
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 9.3e-77 291.6 414 44.9
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 7.8e-76 288.5 417 43.9
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.5e-74 284.3 414 43.0
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 3.3e-74 283.1 403 45.7
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 4.3e-74 282.7 420 45.5
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 3.6e-73 279.6 446 41.9
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 4.8e-73 279.3 389 44.0
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 4.8e-73 279.3 425 42.8
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 6.2e-73 278.9 414 41.8
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 3.1e-72 276.6 405 44.4
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 5.3e-72 275.8 419 44.4
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 6.9e-72 275.4 411 42.1
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 1.5e-71 274.2 423 41.8
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 9.9e-71 271.6 415 43.1
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 6.4e-70 268.9 400 43.5
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 2.4e-69 266.9 384 44.0
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 5.4e-69 265.8 412 42.0
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 2.1e-68 263.8 420 42.1
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 4.6e-68 262.7 380 43.7
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 7.3e-66 255.4 378 41.8
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 6.2e-65 252.3 410 41.0
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.1e-64 251.5 421 38.7
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 1.8e-64 250.8 404 40.8
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 4.0e-64 249.6 410 42.9
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 5.3e-64 249.2 474 40.3
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.6e-63 246.9 465 39.6
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 2.2e-62 243.8 417 40.8
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 3.8e-62 243.0 408 39.2
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 3.8e-62 243.0 398 40.5
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.9e-61 240.7 462 39.0
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.9e-61 240.7 446 37.2
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.4e-61 240.4 474 39.5
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.6e-60 237.7 348 40.2
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 1.6e-60 237.7 473 37.6
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 2.7e-60 236.9 402 40.5
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.0e-59 235.0 427 37.0
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-59 234.6 465 39.1
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 3.9e-59 233.0 421 39.2
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 1.3e-57 228.0 376 40.7
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.6e-57 227.6 313 45.7
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 2.8e-57 226.9 420 36.0
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.1e-56 224.9 372 40.1
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.8e-56 224.2 380 38.7
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.4e-56 223.8 457 35.7
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.1e-56 223.4 399 38.1
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 4.0e-56 223.0 427 37.9
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 5.3e-56 222.6 400 39.5
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.0e-54 218.4 252 52.0
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 2.2e-54 217.2 385 40.3
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 3.8e-54 216.5 460 35.9
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 6.5e-54 215.7 345 41.2
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 8.4e-54 215.3 431 36.7
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.1e-53 214.9 464 36.4
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.9e-53 214.2 416 34.9
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 4.2e-53 213.0 361 39.9
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.6e-52 211.1 242 49.2
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.5e-50 203.8 327 41.0
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 2.5e-50 203.8 242 49.6
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 2.5e-50 203.8 428 36.7
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 2.1e-49 200.7 465 34.8
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 4.8e-49 199.5 261 43.7
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.8e-48 197.6 454 34.4
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 4.1e-48 196.4 241 48.1
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 9.0e-48 195.3 462 33.5
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.2e-47 194.9 465 33.8
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 3.4e-47 193.4 343 40.2
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.7e-46 191.0 219 53.4
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 2.9e-46 190.3 422 38.2
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 5.0e-46 189.5 402 36.8
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.9e-45 187.6 433 34.9
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 5.5e-45 186.0 415 35.2
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 5.5e-45 186.0 419 35.3
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 7.2e-45 185.7 423 34.3
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-44 184.9 242 45.9
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.2e-44 184.9 382 35.9
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 7.9e-44 182.2 433 34.4
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 1.3e-43 181.4 239 46.9
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 1.8e-43 181.0 247 43.7
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 3.9e-43 179.9 400 35.8
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 3.9e-43 179.9 428 30.1
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 5.1e-43 179.5 408 31.9
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.9e-42 177.6 365 35.6
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 1.3e-41 174.9 433 33.0
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 2.8e-41 173.7 247 43.7
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 4.8e-41 172.9 428 33.4
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.4e-40 171.4 440 33.6
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 3.1e-40 170.2 263 44.9
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.8e-33 147.1 425 33.6
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.7e-33 146.7 315 33.7
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 1.8e-32 144.4 241 37.3
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 2.4e-32 144.1 460 29.6
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 6.9e-32 142.5 344 29.1
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 6.1e-28 129.4 323 31.3
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.8e-27 127.9 384 29.9
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.5e-26 124.8 245 34.3
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 4.8e-25 119.8 257 37.7
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.4e-24 117.5 135 54.1
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.0e-22 112.1 115 49.6
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 5.0e-22 109.8 255 34.9
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.9e-21 107.8 401 29.4
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.5e-21 107.5 136 50.0
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 4.7e-20 103.2 299 29.1
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 2.8e-17 94.0 222 35.1
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 2.4e-16 90.9 94 50.0
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.5e-15 87.0 80 67.5
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 3.8e-14 83.6 98 41.8
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.9e-13 81.3 110 44.5
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.7e-12 76.6 80 43.8
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 8.8e-11 72.4 71 52.1
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.0e-10 71.2 107 37.4
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.0e-10 71.2 258 27.1
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.6e-10 70.9 108 38.9
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.3e-09 68.6 68 45.6
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 6.3e-09 66.2 64 56.2
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.8e-08 64.7 69 46.4
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 7.0e-08 62.8 81 50.6
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.5e-07 60.1 131 38.9
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 7.7e-07 59.3 155 31.6
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 1.7e-06 58.2 50 66.0
Lalb_Chr10g0096921 Lupinus albus HOM05D005648 ORTHO05D007357 2.9e-06 57.4 70 40.0
Hund16647 Selenicereus undatus HOM05D005648 ORTHO05D007357 8.5e-06 55.8 93 39.8


User provided reference genes

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