Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 1.9e-40 168.7 84 100.0
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.2e-34 149.4 84 88.1
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 1.1e-30 136.3 84 81.0
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 8.9e-30 133.3 84 79.8
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 2.2e-28 128.6 84 76.2
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 6.4e-28 127.1 84 75.0
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 2.4e-27 125.2 78 79.5
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 3.4e-21 104.8 60 88.3
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 1.6e-15 85.9 78 56.4
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 6.2e-15 84.0 78 55.1
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 1.8e-14 82.4 82 48.8
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.8e-14 82.4 76 51.3
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 3.1e-14 81.6 78 52.6
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 4.0e-14 81.3 82 53.7
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 4.0e-14 81.3 65 56.9
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 2.0e-13 79.0 82 46.3
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 3.4e-13 78.2 79 51.9
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 3.4e-13 78.2 78 53.8
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.4e-13 78.2 82 51.2
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 4.4e-13 77.8 82 48.8
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 4.4e-13 77.8 80 48.8
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 4.4e-13 77.8 80 48.8
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 5.8e-13 77.4 82 53.7
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 7.6e-13 77.0 75 53.3
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 7.6e-13 77.0 78 47.4
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 1.7e-12 75.9 78 47.4
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 2.2e-12 75.5 68 51.5
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 2.2e-12 75.5 68 51.5
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 2.2e-12 75.5 69 50.7
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 8.4e-12 73.6 68 51.5
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 1.1e-11 73.2 81 44.4
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.1e-11 73.2 80 45.0
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.1e-11 73.2 74 48.6
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 1.1e-11 73.2 78 52.6
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 1.4e-11 72.8 79 48.1
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 1.4e-11 72.8 76 48.7
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 1.9e-11 72.4 82 41.5
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.9e-11 72.4 75 45.3
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 3.2e-11 71.6 82 42.7
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 4.1e-11 71.2 78 44.9
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 4.1e-11 71.2 78 46.2
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 4.1e-11 71.2 78 46.2
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 7.1e-11 70.5 77 44.2
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 9.2e-11 70.1 69 49.3
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.2e-10 69.7 73 46.6
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.6e-10 69.3 63 55.6
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 1.6e-10 69.3 76 43.4
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 3.5e-10 68.2 74 50.0
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 3.5e-10 68.2 66 50.0
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 4.6e-10 67.8 78 46.2
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.3e-09 66.2 55 60.0
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 1.7e-09 65.9 65 46.2
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 1.7e-09 65.9 65 46.2
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 2.3e-09 65.5 78 39.7
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 3.9e-09 64.7 69 46.4
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 5.1e-09 64.3 75 46.7
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 5.1e-09 64.3 65 46.2
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 5.1e-09 64.3 65 44.6
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 6.6e-09 63.9 74 44.6
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 8.7e-09 63.5 68 48.5
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 8.7e-09 63.5 70 44.3
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 1.1e-08 63.2 65 46.2
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 1.9e-08 62.4 65 44.6
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 1.9e-08 62.4 65 44.6
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 3.3e-08 61.6 65 44.6
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 3.3e-08 61.6 65 44.6
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 3.3e-08 61.6 67 41.8
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 3.3e-08 61.6 65 43.1
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 7.3e-08 60.5 59 47.5
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 7.3e-08 60.5 59 47.5
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 7.3e-08 60.5 71 42.3
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.2e-07 59.7 63 50.8
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.2e-07 59.7 73 39.7
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 1.6e-07 59.3 65 41.5
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 1.6e-07 59.3 79 43.0
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 2.1e-07 58.9 65 41.5
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 2.1e-07 58.9 62 46.8
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 2.8e-07 58.5 62 45.2
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 2.8e-07 58.5 76 38.2
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 4.7e-07 57.8 71 42.3
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 4.7e-07 57.8 81 42.0
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 8.1e-07 57.0 62 45.2
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 1.4e-06 56.2 75 37.3
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 1.8e-06 55.8 79 41.8
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 1.8e-06 55.8 64 39.1
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 3.1e-06 55.1 76 35.5
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 4.0e-06 54.7 47 53.2
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 4.0e-06 54.7 75 36.0
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 5.2e-06 54.3 65 40.0
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 5.2e-06 54.3 64 42.2
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 5.2e-06 54.3 74 35.1


User provided reference genes

Program Settings