Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G77.13 Capsicum annuum HOM05D000173 ORTHO05D004400 5.5e-81 304.3 159 100.0
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 7.5e-38 161.0 80 95.0
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 7.5e-38 161.0 80 95.0
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 7.5e-38 161.0 80 95.0
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 9.8e-38 160.6 80 95.0
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 5.4e-36 154.8 82 86.6
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 9.2e-36 154.1 82 86.6
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 9.2e-36 154.1 82 86.6
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 2.1e-35 152.9 108 69.4
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 2.7e-35 152.5 82 85.4
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 4.6e-35 151.8 82 85.4
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 6.0e-35 151.4 82 84.1
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 7.8e-35 151.0 82 85.4
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 7.8e-35 151.0 82 85.4
AUR62025878 Chenopodium quinoa HOM05D000173 ORTHO05D004400 7.8e-35 151.0 82 85.4
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 7.8e-35 151.0 82 85.4
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 1.0e-34 150.6 82 84.1
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 1.3e-34 150.2 82 84.1
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 1.3e-34 150.2 80 86.2
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 3.0e-34 149.1 82 84.1
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 3.0e-34 149.1 82 82.9
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 3.0e-34 149.1 108 69.4
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 3.0e-34 149.1 82 84.1
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 3.9e-34 148.7 82 82.9
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 5.1e-34 148.3 82 82.9
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 8.6e-34 147.5 82 84.1
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 8.6e-34 147.5 82 82.9
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 8.6e-34 147.5 82 82.9
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 8.6e-34 147.5 82 82.9
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 1.1e-33 147.1 82 79.3
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 1.1e-33 147.1 108 69.4
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 1.1e-33 147.1 82 84.1
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 1.5e-33 146.7 82 81.7
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 1.5e-33 146.7 82 82.9
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 1.9e-33 146.4 80 86.2
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 2.5e-33 146.0 109 66.1
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 2.5e-33 146.0 82 82.9
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 2.5e-33 146.0 82 80.5
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 3.3e-33 145.6 82 80.5
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 3.3e-33 145.6 82 82.9
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 4.3e-33 145.2 82 80.5
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 4.3e-33 145.2 82 80.5
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 4.3e-33 145.2 82 81.7
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 4.3e-33 145.2 82 79.3
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 5.6e-33 144.8 82 80.5
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 5.6e-33 144.8 82 80.5
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 5.6e-33 144.8 82 80.5
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 5.6e-33 144.8 108 68.5
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 5.6e-33 144.8 108 68.5
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 5.6e-33 144.8 108 68.5
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 5.6e-33 144.8 108 68.5
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 5.6e-33 144.8 108 68.5
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 5.6e-33 144.8 82 82.9
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 5.6e-33 144.8 82 82.9
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 5.6e-33 144.8 82 81.7
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 5.6e-33 144.8 87 82.8
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 5.6e-33 144.8 82 82.9
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 7.3e-33 144.4 82 81.7
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 9.5e-33 144.1 82 81.7
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 9.5e-33 144.1 87 77.0
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 1.2e-32 143.7 82 79.3
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 1.2e-32 143.7 82 81.7
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 1.6e-32 143.3 80 81.2
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 1.6e-32 143.3 82 79.3
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 1.6e-32 143.3 82 79.3
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 1.6e-32 143.3 82 79.3
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 2.8e-32 142.5 82 80.5
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 2.8e-32 142.5 82 79.3
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 2.8e-32 142.5 82 78.0
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 2.8e-32 142.5 80 80.0
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 3.6e-32 142.1 82 79.3
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 3.6e-32 142.1 87 80.5
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 3.6e-32 142.1 108 67.6
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 3.6e-32 142.1 82 79.3
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 4.7e-32 141.7 82 79.3
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 4.7e-32 141.7 82 79.3
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 6.2e-32 141.4 80 80.0
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 8.1e-32 141.0 82 79.3
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 1.1e-31 140.6 80 78.8
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 1.1e-31 140.6 80 78.8
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 1.4e-31 140.2 82 78.0
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 1.4e-31 140.2 82 79.3
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 1.8e-31 139.8 80 77.5
CDE04G0761 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 1.8e-31 139.8 80 80.0
FvH4_6g50670 Fragaria vesca HOM05D000173 ORTHO05D004400 1.8e-31 139.8 82 79.3
FAN14G1259 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.8e-31 139.8 82 79.3
FAN14G3847 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.8e-31 139.8 86 76.7
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 1.8e-31 139.8 87 78.2
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 2.3e-31 139.4 80 77.5
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 3.1e-31 139.0 82 76.8
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 3.1e-31 139.0 82 78.0
Carub.0001s1805 Capsella rubella HOM05D000173 ORTHO05D004400 5.2e-31 138.3 80 77.5
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 5.2e-31 138.3 80 77.5
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 5.2e-31 138.3 82 75.6
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 5.2e-31 138.3 82 75.6
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 6.8e-31 137.9 80 77.5
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 6.8e-31 137.9 80 76.2
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 6.8e-31 137.9 80 76.2
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 6.8e-31 137.9 82 78.0
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 6.8e-31 137.9 83 79.5
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 8.9e-31 137.5 82 79.3
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 8.9e-31 137.5 80 76.2
A06p14500 Brassica napus HOM05D000173 ORTHO05D004400 8.9e-31 137.5 80 76.2
C05p16720 Brassica napus HOM05D000173 ORTHO05D004400 8.9e-31 137.5 80 76.2
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 8.9e-31 137.5 80 75.0
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 8.9e-31 137.5 80 75.0
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 8.9e-31 137.5 80 76.2
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 8.9e-31 137.5 80 77.5
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 1.2e-30 137.1 80 76.2
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 1.5e-30 136.7 80 78.8
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 1.5e-30 136.7 80 78.8
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 2.0e-30 136.3 80 75.0
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 2.6e-30 136.0 80 75.0
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 2.6e-30 136.0 87 73.6
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 1.7e-29 133.3 99 64.6
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 2.2e-29 132.9 79 73.4
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 3.7e-29 132.1 82 75.6
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 1.4e-28 130.2 82 75.6
Aqoxy2G03970 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 2.4e-28 129.4 76 75.0
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 3.2e-28 129.0 80 71.2
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 5.4e-28 128.3 79 69.6
Medtr8g007440 Medicago truncatula HOM05D000173 ORTHO05D004400 1.6e-27 126.7 81 74.1
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 3.5e-27 125.6 82 69.5
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 6.0e-27 124.8 62 96.8
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 7.8e-27 124.4 80 70.0
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 1.2e-24 117.1 82 64.6
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 1.6e-24 116.7 64 87.5
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.6e-24 116.7 80 66.2
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 2.8e-24 115.9 64 82.8
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 4.0e-23 112.1 83 65.1
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 5.8e-22 108.2 96 52.1
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 5.8e-22 108.2 64 73.4
Cc04_g07390 Coffea canephora HOM05D000173 ORTHO05D004400 7.6e-22 107.8 82 65.9
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 9.9e-22 107.5 96 52.1
SHI30368 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-20 103.6 62 74.2
Sabra15G0075200 Salix brachista HOM05D000173 ORTHO05D004400 3.5e-19 99.0 125 45.6
VMungo0251G1487 Vigna mungo HOM05D000173 ORTHO05D004400 2.8e-16 89.4 82 56.1
arahy.Tifrunner.gnm1.ann1.DFGQ2J Arachis hypogaea HOM05D000173 ORTHO05D004400 6.2e-16 88.2 120 46.7
ClCG06G014940 Citrullus lanatus HOM05D000173 ORTHO05D004400 8.1e-16 87.8 82 56.1
CSS0038913 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 5.8e-14 81.6 45 82.2
Cre06.g249300 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D004400 5.4e-12 75.1 71 45.1
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 1.3e-10 70.5 76 40.8
CARHR067020 Cardamine hirsuta HOM05D000173 ORTHO05D004400 2.3e-10 69.7 41 75.6
HanXRQChr17g0536771 Helianthus annuus HOM05D000006 ORTHO05D015692 1.1e-09 67.4 65 55.4
VMungo1215G0511 Vigna mungo HOM05D002891 ORTHO05D003369 6.9e-07 58.2 43 62.8


User provided reference genes

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