Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.7e-102 375.9 185 100.0
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.7e-102 375.9 185 100.0
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 1.7e-102 375.9 185 100.0
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.7e-102 375.9 185 100.0
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 3.1e-99 365.2 185 98.4
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 4.6e-95 351.3 188 94.1
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 1.7e-94 349.4 183 92.9
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 2.1e-92 342.4 186 93.0
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 6.2e-92 340.9 188 89.9
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 6.2e-92 340.9 188 89.9
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 8.1e-92 340.5 188 90.4
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 8.1e-92 340.5 188 90.4
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.4e-91 339.7 185 92.4
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 3.4e-90 335.1 171 97.7
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 5.8e-90 334.3 188 90.4
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 5.8e-90 334.3 188 90.4
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 7.6e-90 334.0 188 91.5
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 8.4e-89 330.5 171 96.5
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 1.4e-88 329.7 189 87.3
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.2e-87 326.6 181 90.1
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.7e-87 325.5 187 88.2
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.7e-87 325.5 187 88.2
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 2.7e-87 325.5 187 88.8
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 2.7e-87 325.5 191 89.0
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 6.0e-87 324.3 187 89.3
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 6.0e-87 324.3 187 89.3
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 6.0e-87 324.3 187 89.3
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 6.0e-87 324.3 185 89.2
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 7.8e-87 323.9 187 88.8
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 7.8e-87 323.9 187 88.8
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 7.8e-87 323.9 187 88.8
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 7.8e-87 323.9 188 89.9
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 7.8e-87 323.9 188 89.9
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 7.8e-87 323.9 188 89.9
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 7.8e-87 323.9 188 89.9
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 1.7e-86 322.8 188 89.9
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 1.7e-86 322.8 188 89.9
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 1.7e-86 322.8 188 89.9
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 2.3e-86 322.4 184 88.0
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 3.9e-86 321.6 184 87.5
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 5.1e-86 321.2 188 89.4
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 8.6e-86 320.5 188 89.9
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 8.6e-86 320.5 188 89.9
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-85 320.1 188 89.4
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-85 320.1 188 89.4
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 2.5e-85 318.9 187 88.2
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 1.6e-84 316.2 165 95.2
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 1.1e-83 313.5 185 87.0
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 3.1e-83 312.0 180 88.9
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 7.6e-82 307.4 188 85.6
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.3e-81 306.6 186 87.6
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 4.9e-81 304.7 189 84.1
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.4e-80 303.1 185 83.8
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 5.4e-80 301.2 173 89.0
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 4.6e-79 298.1 185 84.3
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 6.0e-79 297.7 187 82.9
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.1e-78 294.7 188 80.9
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 2.5e-77 292.4 184 82.6
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.1e-76 289.3 189 82.0
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 9.0e-75 283.9 156 92.9
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 2.2e-73 279.3 188 80.3
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 2.0e-66 256.1 161 85.1
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 2.0e-66 256.1 161 85.1
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.3e-65 253.4 154 85.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 6.4e-65 251.1 160 81.2
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 1.4e-64 250.0 169 81.1
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 3.3e-61 238.8 148 83.1
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 1.3e-57 226.9 129 89.1
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 2.9e-57 225.7 151 78.1
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-53 213.8 115 91.3
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 1.6e-52 209.9 133 83.5
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 1.6e-52 209.9 190 57.9
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.8e-52 208.4 135 77.8
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 1.8e-46 189.9 180 62.8
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 5.1e-46 188.3 104 89.4
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 5.7e-45 184.9 180 61.1
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 5.7e-45 184.9 172 61.6
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 3.7e-44 182.2 176 58.5
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 8.2e-44 181.0 181 60.2
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 8.2e-44 181.0 181 60.2
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.4e-43 179.5 181 59.7
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.4e-43 179.5 181 59.7
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 2.2e-41 172.9 112 82.1
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 7.2e-40 167.9 104 80.8
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.3e-37 159.1 85 90.6
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.1e-35 154.1 110 75.5
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 5.3e-35 151.8 110 74.5
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.9e-34 148.3 86 86.0
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 1.0e-33 147.5 72 97.2
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.3e-33 147.1 84 85.7
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 2.9e-33 146.0 74 97.3
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 1.9e-32 143.3 81 87.7
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.6e-31 140.2 72 93.1
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 2.1e-31 139.8 74 90.5
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 7.9e-31 137.9 68 95.6
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 7.9e-31 137.9 68 95.6
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 3.0e-30 136.0 104 71.2
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.7e-28 129.0 109 67.0
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.4e-27 126.3 109 66.1
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.1e-24 117.5 69 79.7
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.9e-24 116.7 74 78.4
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.2e-24 115.9 70 78.6
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 6.1e-23 111.7 184 36.4
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.0e-23 111.3 69 76.8
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 2.0e-21 106.7 71 76.1
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.3e-21 105.9 66 75.8
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 5.7e-21 105.1 61 82.0
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.8e-19 100.1 55 85.5
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.1e-19 99.4 66 68.2
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.6e-18 97.1 55 85.5
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 2.7e-18 96.3 68 77.9
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.9e-16 90.1 47 87.2
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 3.2e-16 89.4 46 87.0
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.2e-16 88.2 49 83.7
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.6e-13 79.7 57 75.4
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.3e-12 77.4 53 71.7
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 3.7e-12 75.9 62 69.4
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.1e-11 74.3 68 58.8
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.8e-11 73.6 41 82.9
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 5.4e-11 72.0 42 83.3
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.5e-10 68.9 36 88.9
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 5.0e-09 65.5 34 88.2
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 8.6e-09 64.7 36 77.8
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 1.2e-07 60.8 31 93.5
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 2.8e-07 59.7 54 68.5
Pp3c2_23470 Physcomitrium patens HOM05D002864 ORTHO05D008485 1.8e-06 57.0 55 65.5


User provided reference genes

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