Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G743.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-100 369.8 215 100.0
CAN.G2119.3 Capsicum annuum HOM05D002496 ORTHO05D002787 8.0e-67 257.7 325 54.5
CAN.G309.128 Capsicum annuum HOM05D002496 ORTHO05D002146 3.4e-49 199.1 205 54.1
CAN.G1353.3 Capsicum annuum HOM05D002496 ORTHO05D002787 3.7e-48 195.7 259 48.6
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-39 167.2 281 45.2
CAN.G1751.12 Capsicum annuum HOM05D002496 ORTHO05D002787 3.2e-39 166.0 282 48.6
CAN.G1703.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-37 161.0 282 47.2
CAN.G1833.6 Capsicum annuum HOM05D002496 ORTHO05D002787 3.0e-37 159.5 281 48.0
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 1.5e-36 157.1 282 47.2
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 1.5e-36 157.1 282 47.2
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 5.6e-36 155.2 282 47.2
CAN.G1579.14 Capsicum annuum HOM05D002496 ORTHO05D002787 9.5e-36 154.5 275 47.3
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 2.1e-35 153.3 281 46.6
CAN.G2026.1 Capsicum annuum HOM05D002496 ORTHO05D002787 8.1e-35 151.4 281 45.9
CAN.G2119.2 Capsicum annuum HOM05D002496 ORTHO05D002787 3.1e-34 149.4 244 51.6
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 2.6e-33 146.4 280 46.4
CAN.G309.146 Capsicum annuum HOM05D002496 ORTHO05D002787 1.7e-32 143.7 281 46.6
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 3.2e-31 139.4 325 39.1
CAN.G309.130 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-29 134.0 112 65.2
CAN.G1353.19 Capsicum annuum HOM05D002496 ORTHO05D002787 1.7e-29 133.7 281 44.1
CAN.G575.112 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-28 131.0 112 80.4
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 1.5e-28 130.6 273 44.7
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 1.9e-28 130.2 356 34.8
CAN.G309.113 Capsicum annuum HOM05D002496 ORTHO05D002787 7.3e-28 128.3 275 43.6
CAN.G309.125 Capsicum annuum HOM05D002496 ORTHO05D002787 8.1e-27 124.8 90 72.2
CAN.G2177.2 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-26 124.4 133 60.2
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 1.4e-26 124.0 247 43.7
CAN.G309.144 Capsicum annuum HOM05D002496 ORTHO05D002146 1.8e-26 123.6 112 73.2
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 3.1e-26 122.9 280 40.4
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 4.0e-26 122.5 384 34.4
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 8.9e-26 121.3 277 41.9
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 1.5e-25 120.6 285 38.9
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 1.5e-25 120.6 281 40.2
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 1.5e-25 120.6 293 39.6
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 2.0e-25 120.2 280 40.4
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 2.6e-25 119.8 281 40.6
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 3.4e-25 119.4 293 36.5
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 5.8e-25 118.6 280 39.3
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 5.8e-25 118.6 280 39.3
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 5.8e-25 118.6 286 40.2
Lj2A763T47 Lonicera japonica HOM05D002496 ORTHO05D002787 9.9e-25 117.9 270 39.6
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 9.9e-25 117.9 280 39.3
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 1.7e-24 117.1 280 39.3
CAN.G309.135 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-24 116.7 111 63.1
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 2.2e-24 116.7 289 38.8
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 2.2e-24 116.7 289 38.8
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 2.2e-24 116.7 289 38.8
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 2.2e-24 116.7 280 38.6
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 2.9e-24 116.3 295 38.6
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 4.9e-24 115.5 296 38.2
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 4.9e-24 115.5 295 38.6
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 6.4e-24 115.2 303 37.6
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 6.4e-24 115.2 281 38.1
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 6.4e-24 115.2 296 38.5
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 6.4e-24 115.2 296 38.5
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-23 114.4 112 75.0
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.1e-23 114.4 276 38.8
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 1.1e-23 114.4 296 38.5
CAN.G309.99 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-23 114.0 181 44.2
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 1.4e-23 114.0 297 38.7
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 1.4e-23 114.0 285 39.6
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 2.4e-23 113.2 280 38.9
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 3.2e-23 112.8 290 39.0
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 3.2e-23 112.8 296 38.2
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 4.2e-23 112.5 292 38.4
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 4.2e-23 112.5 289 37.7
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 4.2e-23 112.5 297 38.4
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 5.4e-23 112.1 287 38.0
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 5.4e-23 112.1 297 38.0
CAN.G309.126 Capsicum annuum HOM05D002496 ORTHO05D002787 7.1e-23 111.7 93 82.8
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 7.1e-23 111.7 296 37.8
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 7.1e-23 111.7 278 38.1
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 7.1e-23 111.7 272 37.9
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 9.3e-23 111.3 294 37.4
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 9.3e-23 111.3 295 37.6
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 9.3e-23 111.3 296 38.5
CAN.G134.148 Capsicum annuum HOM05D002048 ORTHO05D002146 1.2e-22 110.9 103 76.7
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 1.2e-22 110.9 295 38.0
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 1.2e-22 110.9 294 37.8
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 2.7e-22 109.8 297 37.0
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 3.5e-22 109.4 292 32.5
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 3.5e-22 109.4 290 37.2
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 3.5e-22 109.4 289 37.4
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 4.6e-22 109.0 287 35.5
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 4.6e-22 109.0 290 36.9
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 6.0e-22 108.6 290 37.6
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 6.0e-22 108.6 290 37.6
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 6.0e-22 108.6 275 38.2
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 6.0e-22 108.6 278 37.8
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 7.8e-22 108.2 290 37.6
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 1.7e-21 107.1 380 30.5
CiPaw.14G137000 Carya illinoinensis HOM05D002496 ORTHO05D002787 2.3e-21 106.7 304 38.2
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 3.0e-21 106.3 290 36.6
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 1.1e-20 104.4 290 35.9
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 4.3e-20 102.4 290 35.9
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 5.6e-20 102.1 295 36.3
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 7.3e-20 101.7 298 36.6
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 9.6e-20 101.3 283 35.7
CAN.G309.114 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-19 100.9 90 57.8
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 1.3e-19 100.9 295 31.5
CAN.G309.134 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-19 100.5 214 36.0
CAN.G134.141 Capsicum annuum HOM05D002518 ORTHO05D002630 6.2e-19 98.6 94 75.5
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 1.8e-18 97.1 339 32.7
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 3.1e-18 96.3 295 34.6
Dinv11478 Davidia involucrata HOM05D002496 ORTHO05D002787 5.3e-18 95.5 238 40.8
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 9.0e-18 94.7 297 35.4
CAN.G1353.21 Capsicum annuum HOM05D002048 ORTHO05D002146 2.0e-17 93.6 161 41.6
CAN.G309.109 Capsicum annuum HOM05D002048 ORTHO05D002146 3.4e-17 92.8 94 75.5
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 5.8e-17 92.0 247 38.9
C03p92660 Brassica napus HOM05D002496 ORTHO05D002787 7.6e-17 91.7 180 36.7
TWI34G0193 Tripterygium wilfordii HOM05D002496 ORTHO05D002787 1.3e-16 90.9 59 78.0
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.7e-16 90.5 301 33.2
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 2.2e-16 90.1 292 35.6
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 3.8e-16 89.4 95 73.7
CAN.G309.107 Capsicum annuum HOM05D002496 ORTHO05D002787 3.8e-16 89.4 109 72.5
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 4.9e-16 89.0 298 37.2
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 4.9e-16 89.0 298 37.2
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 4.9e-16 89.0 306 33.3
CAN.G2802.1 Capsicum annuum HOM05D002496 ORTHO05D002787 8.4e-16 88.2 210 35.7
CAN.G1669.8 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-15 87.8 47 91.5
CAN.G309.124 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-15 87.8 94 71.3
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 1.1e-15 87.8 298 34.9
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 1.1e-15 87.8 296 34.1
CAN.G1783.2 Capsicum annuum HOM05D002496 ORTHO05D002787 3.2e-15 86.3 46 91.3
CAN.G225.19 Capsicum annuum HOM05D002496 ORTHO05D002787 3.2e-15 86.3 94 68.1
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 5.4e-15 85.5 47 87.2
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 5.4e-15 85.5 87 55.2
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 5.4e-15 85.5 47 87.2
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 5.4e-15 85.5 47 87.2
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 5.4e-15 85.5 47 87.2
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 7.1e-15 85.1 296 34.5
CAN.G134.151 Capsicum annuum HOM05D002496 ORTHO05D002787 9.3e-15 84.7 45 91.1
CAN.G4338.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-14 84.3 47 89.4
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 1.6e-14 84.0 47 85.1
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 2.1e-14 83.6 47 85.1
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 7.9e-14 81.6 47 80.9
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 7.9e-14 81.6 47 83.0
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 7.9e-14 81.6 47 80.9
SEGI_17528 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 1.3e-13 80.9 302 32.5
VMungo0251G3571 Vigna mungo HOM05D002496 ORTHO05D002787 1.3e-13 80.9 47 80.9
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 1.8e-13 80.5 47 80.9
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.8e-13 80.5 47 80.9
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 2.3e-13 80.1 47 83.0
CAN.G1353.27 Capsicum annuum HOM05D002496 ORTHO05D002787 3.0e-13 79.7 46 87.0
CAN.G309.123 Capsicum annuum HOM05D002496 ORTHO05D002787 3.9e-13 79.3 54 75.9
CAN.G309.103 Capsicum annuum HOM05D002496 ORTHO05D002787 8.7e-13 78.2 45 82.2
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 8.7e-13 78.2 47 83.0
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 8.7e-13 78.2 47 83.0
CAN.G134.146 Capsicum annuum HOM05D002518 ORTHO05D002630 1.1e-12 77.8 45 82.2
CAN.G1353.10 Capsicum annuum HOM05D002496 ORTHO05D002787 4.3e-12 75.9 41 90.2
Psat0s11647g0040 Pisum sativum HOM05D002496 ORTHO05D002787 4.3e-12 75.9 40 90.0
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.6e-11 73.9 74 56.8
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 1.6e-11 73.9 56 67.9
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 1.6e-11 73.9 56 67.9
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 2.1e-11 73.6 71 56.3
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 3.6e-11 72.8 307 28.0
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 6.2e-11 72.0 70 52.9
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.8e-10 70.5 74 55.4
Psat3g144720 Pisum sativum HOM05D002496 ORTHO05D002787 2.4e-10 70.1 42 83.3
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.2e-09 67.8 104 56.7
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 5.8e-09 65.5 47 70.2
CAN.G1353.9 Capsicum annuum HOM05D002048 ORTHO05D002146 9.9e-09 64.7 49 71.4
CAN.G1579.4 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-08 64.3 48 72.9
CAN.G1669.7 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-08 64.3 49 71.4
Lsat_1_v5_gn_2_54100 Lactuca sativa HOM05D002496 ORTHO05D003550 1.7e-08 63.9 77 49.4
CAN.G2314.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-08 63.5 49 69.4
CAN.G1579.1 Capsicum annuum HOM05D002496 ORTHO05D002787 4.9e-08 62.4 49 69.4
CAN.G2026.4 Capsicum annuum HOM05D002496 ORTHO05D002787 4.9e-08 62.4 53 67.9
arahy.Tifrunner.gnm1.ann1.WZQ8WP Arachis hypogaea HOM05D002496 ORTHO05D002787 8.4e-08 61.6 78 50.0
CAN.G2101.1 Capsicum annuum HOM05D002496 ORTHO05D002787 8.4e-08 61.6 58 60.3
CAN.G309.100 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-07 60.1 54 59.3
SHI31315 Sapria himalayana HOM05D002496 ORTHO05D002787 4.2e-07 59.3 37 83.8
CAN.G309.121 Capsicum annuum HOM05D002496 ORTHO05D002787 5.5e-07 58.9 49 63.3
CAN.G1563.1 Capsicum annuum HOM05D002496 ORTHO05D002787 7.1e-07 58.5 29 93.1


User provided reference genes

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