Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.1e-65 253.1 122 100.0
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.7e-61 238.0 122 93.4
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.1e-60 236.5 122 91.8
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.1e-60 236.5 122 91.8
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.4e-60 236.1 122 92.6
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 9.2e-60 233.4 122 91.8
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.4e-55 219.5 122 82.8
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.8e-55 219.2 122 82.8
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.2e-54 216.5 120 82.5
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 9.8e-54 213.4 118 84.7
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 4.9e-53 211.1 109 91.7
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 3.3e-49 198.4 120 75.0
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 3.6e-48 194.9 120 70.8
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 8.3e-45 183.7 120 69.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.5e-43 178.3 122 67.2
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 8.6e-42 173.7 124 66.9
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 8.6e-42 173.7 122 64.8
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.5e-41 172.9 122 63.9
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 3.1e-39 165.2 122 65.6
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 5.4e-36 154.5 120 57.5
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 3.0e-34 148.7 105 66.7
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 4.3e-33 144.8 127 56.7
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 2.8e-32 142.1 117 58.1
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 1.8e-31 139.4 120 55.8
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.9e-31 137.1 120 55.0
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 8.9e-31 137.1 120 55.8
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 1.2e-30 136.7 120 55.0
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.5e-30 136.3 117 54.7
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.4e-30 135.2 120 55.0
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 3.4e-30 135.2 117 54.7
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 5.8e-30 134.4 120 55.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 7.6e-30 134.0 120 55.0
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 7.6e-30 134.0 118 55.9
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.3e-29 133.3 120 54.2
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.3e-29 133.3 122 54.9
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.7e-29 132.9 126 50.8
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 2.2e-29 132.5 120 54.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.9e-29 132.1 120 52.5
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 3.8e-29 131.7 126 50.0
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 3.8e-29 131.7 126 50.0
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 8.4e-29 130.6 120 50.8
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.1e-28 130.2 122 50.8
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 1.1e-28 130.2 120 54.2
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 1.4e-28 129.8 122 53.3
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.2e-28 128.6 119 52.9
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 4.2e-28 128.3 119 52.1
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.2e-28 128.3 120 52.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 5.4e-28 127.9 118 53.4
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 7.1e-28 127.5 120 50.0
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 7.1e-28 127.5 126 50.0
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 54.2
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.3e-28 127.1 119 52.1
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 50.0
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 2.1e-27 125.9 120 52.5
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 2.1e-27 125.9 120 52.5
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 2.1e-27 125.9 120 52.5
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 2.1e-27 125.9 120 52.5
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 2.1e-27 125.9 120 50.8
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 3.5e-27 125.2 120 51.7
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.5e-27 125.2 120 53.3
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 3.5e-27 125.2 119 52.1
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.6e-27 124.8 120 52.5
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 4.6e-27 124.8 120 52.5
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 4.6e-27 124.8 120 52.5
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 4.6e-27 124.8 120 51.7
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 6.0e-27 124.4 120 51.7
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 6.0e-27 124.4 120 48.3
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 6.0e-27 124.4 120 52.5
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.0e-27 124.4 119 51.3
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 7.8e-27 124.0 120 51.7
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 7.8e-27 124.0 120 51.7
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 7.8e-27 124.0 120 50.0
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 7.8e-27 124.0 120 51.7
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 52.5
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 51.7
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 51.7
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.3e-26 122.5 120 47.5
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 3.9e-26 121.7 120 47.5
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 3.9e-26 121.7 127 45.7
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 8.7e-26 120.6 120 50.8
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 8.7e-26 120.6 125 46.4
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 8.7e-26 120.6 117 47.9
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.1e-25 120.2 117 48.7
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.5e-25 119.8 127 47.2
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.3e-25 118.6 120 50.8
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 7.3e-25 117.5 119 47.9
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 9.6e-25 117.1 127 47.2
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 9.6e-25 117.1 117 52.1
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 9.6e-25 117.1 120 49.2
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 9.6e-25 117.1 120 49.2
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 9.6e-25 117.1 120 49.2
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.6e-24 116.3 120 46.7
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.1e-24 115.9 121 50.4
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.6e-24 115.2 120 50.0
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.2e-22 110.2 121 47.9
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 3.4e-22 108.6 127 43.3
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.2e-21 105.9 114 46.5
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.9e-21 105.5 122 45.9
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.9e-20 102.8 127 43.3
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 1.6e-19 99.8 99 46.5
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 7.9e-19 97.4 97 46.4
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 1.7e-18 96.3 124 40.3
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 2.3e-18 95.9 120 43.3
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.9e-18 95.1 74 62.2
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 8.7e-18 94.0 123 39.0
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 8.7e-18 94.0 77 58.4
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 2.9e-13 79.0 87 47.1
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 3.8e-13 78.6 66 54.5
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.4e-13 77.4 53 60.4
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.4e-12 76.6 155 29.7
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 2.4e-12 75.9 124 32.3
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 4.2e-12 75.1 62 54.8
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 4.2e-12 75.1 52 59.6
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 5.4e-12 74.7 90 42.2
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 5.4e-12 74.7 115 33.9
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.2e-11 73.6 117 35.0
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 2.1e-11 72.8 80 47.5
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.0e-10 68.9 82 41.5
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 8.7e-10 67.4 63 42.9
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 1.1e-09 67.0 94 40.4
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.9e-09 66.2 53 56.6
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 9.6e-09 63.9 71 47.9
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.6e-08 63.2 115 36.5
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.7e-08 62.0 78 42.3
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.7e-08 62.0 40 62.5
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 2.4e-07 59.3 84 36.9
Lsat_1_v5_gn_2_14240 Lactuca sativa HOM05D005168 ORTHO05D006358 5.3e-07 58.2 33 66.7
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 6.9e-07 57.8 131 29.0
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 2.0e-06 56.2 54 44.4
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 2.6e-06 55.8 66 43.9
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 4.5e-06 55.1 84 35.7


User provided reference genes

Program Settings