Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G725.1 Capsicum annuum HOM05D002488 ORTHO05D002613 7.0e-63 243.8 126 100.0
CAN.G338.29 Capsicum annuum HOM05D002488 ORTHO05D002613 1.2e-30 136.7 167 50.9
Nitab4.5_0001793g0070 Nicotiana tabacum HOM05D002488 ORTHO05D002613 1.1e-26 123.6 147 51.0
Nitab4.5_0003703g0050 Nicotiana tabacum HOM05D002488 ORTHO05D002613 2.0e-25 119.4 169 46.2
PGSC0003DMG400018117 Solanum tuberosum HOM05D002488 ORTHO05D002613 1.3e-24 116.7 169 45.6
Solyc03g112270.3 Solanum lycopersicum HOM05D002488 ORTHO05D002613 1.7e-24 116.3 169 45.0
Sopen03g031370 Solanum pennellii HOM05D002488 ORTHO05D002613 4.9e-24 114.8 169 44.4
Cpa.g.sc159.31 Carica papaya HOM05D002488 ORTHO05D002613 6.2e-19 97.8 149 40.3
Nn2g14939 Nelumbo nucifera HOM05D002488 ORTHO05D002613 2.0e-17 92.8 143 40.6
Manes.14G060900 Manihot esculenta HOM05D002488 ORTHO05D002613 3.4e-17 92.0 144 38.2
Haze_07582 Corylus avellana HOM05D002488 ORTHO05D002613 4.4e-17 91.7 144 38.2
Dinv01306 Davidia involucrata HOM05D002488 ORTHO05D002613 7.6e-17 90.9 152 38.2
CANSAT80G1691 Cannabis sativa HOM05D002488 ORTHO05D002613 9.9e-17 90.5 143 39.9
Actinidia08959 Actinidia chinensis HOM05D002488 ORTHO05D002613 1.1e-15 87.0 141 39.0
Cfa019211 Carpinus fangiana HOM05D002488 ORTHO05D002613 2.4e-15 85.9 144 34.7
CSS0004341 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 9.3e-15 84.0 151 35.8
Duzib068G0576 Durio zibethinus HOM05D002488 ORTHO05D002613 9.3e-15 84.0 136 39.7
QL10p006915 Quercus lobata HOM05D002488 ORTHO05D002613 9.3e-15 84.0 154 34.4
Manes.06G109900 Manihot esculenta HOM05D002488 ORTHO05D002613 1.6e-14 83.2 141 36.2
COL.COLO4_35718 Corchorus olitorius HOM05D002488 ORTHO05D002613 2.7e-14 82.4 136 39.7
Eucgr.B00224 Eucalyptus grandis HOM05D002488 ORTHO05D002613 2.7e-14 82.4 144 38.2
VMungo1309G0915 Vigna mungo HOM05D002488 ORTHO05D002613 2.7e-14 82.4 138 39.1
Phvul.009G174300 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 3.5e-14 82.0 138 39.1
TPR.G21814 Trifolium pratense HOM05D002488 ORTHO05D002613 3.5e-14 82.0 150 34.0
Rhsim12G0167800 Rhododendron simsii HOM05D002488 ORTHO05D002613 7.9e-14 80.9 141 37.6
Thecc.03G025300 Theobroma cacao HOM05D002488 ORTHO05D002613 7.9e-14 80.9 134 36.6
Dinv38530 Davidia involucrata HOM05D002488 ORTHO05D002613 1.0e-13 80.5 143 37.1
Glyma.04G188000 Glycine max HOM05D002488 ORTHO05D002613 1.0e-13 80.5 137 35.8
Medtr3g076990 Medicago truncatula HOM05D002488 ORTHO05D002613 1.0e-13 80.5 163 35.0
PGR083G2220 Punica granatum HOM05D002488 ORTHO05D002613 1.0e-13 80.5 163 33.7
ATR0824G118 Amborella trichopoda HOM05D002488 ORTHO05D002613 1.3e-13 80.1 138 37.7
Peaxi162Scf00089g01345 Petunia axillaris HOM05D002488 ORTHO05D002613 1.3e-13 80.1 158 40.5
MELO3C026254.2 Cucumis melo HOM05D002488 ORTHO05D002613 1.7e-13 79.7 168 32.1
Lalb_Chr23g0273331 Lupinus albus HOM05D002488 ORTHO05D002613 2.3e-13 79.3 150 35.3
Atru.chr9.2572 Acer truncatum HOM05D002488 ORTHO05D002613 3.0e-13 79.0 139 38.1
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 3.9e-13 78.6 151 33.8
Lj9A442T65 Lonicera japonica HOM05D002488 ORTHO05D002613 5.1e-13 78.2 143 37.1
Prupe.8G003900 Prunus persica HOM05D002488 ORTHO05D002613 5.1e-13 78.2 145 35.2
Ca_16132_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 8.7e-13 77.4 139 36.0
Psat0s3170g0040 Pisum sativum HOM05D002488 ORTHO05D002613 8.7e-13 77.4 137 35.8
CsaV3_1G001020 Cucumis sativus L. HOM05D002488 ORTHO05D002613 1.5e-12 76.6 166 31.3
Nitab4.5_0001566g0020 Nicotiana tabacum HOM05D002488 ORTHO05D002613 1.9e-12 76.3 162 37.7
arahy.Tifrunner.gnm1.ann1.9WU370 Arachis hypogaea HOM05D002488 ORTHO05D002613 2.5e-12 75.9 151 33.1
Lj4g0015296 Lotus japonicus HOM05D002488 ORTHO05D002613 2.5e-12 75.9 172 32.6
MBI04_g31204_MAGBIO Magnolia biondii HOM05D002488 ORTHO05D002613 2.5e-12 75.9 144 32.6
CiPaw.12G030700 Carya illinoinensis HOM05D002488 ORTHO05D002613 3.3e-12 75.5 145 35.2
Lalb_Chr08g0236741 Lupinus albus HOM05D002488 ORTHO05D002613 4.3e-12 75.1 141 36.9
Dinv20601 Davidia involucrata HOM05D002488 ORTHO05D002613 5.6e-12 74.7 146 32.9
ClCG06G017390 Citrullus lanatus HOM05D002488 ORTHO05D002613 7.4e-12 74.3 166 31.9
Duzib205G2026 Durio zibethinus HOM05D002488 ORTHO05D002613 7.4e-12 74.3 137 36.5
Gohir.A12G199300 Gossypium hirsutum HOM05D002488 ORTHO05D002613 9.6e-12 73.9 133 36.1
Gohir.D12G202100 Gossypium hirsutum HOM05D002488 ORTHO05D002613 9.6e-12 73.9 133 36.1
Gorai.008G217100 Gossypium raimondii HOM05D002488 ORTHO05D002613 9.6e-12 73.9 133 36.1
RcHm_v2.0_Chr6g0249641 Rosa chinensis HOM05D002488 ORTHO05D002613 9.6e-12 73.9 136 36.0
CSS0018025 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 1.6e-11 73.2 156 36.5
Ca_14275_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 1.6e-11 73.2 142 33.1
Nitab4.5_0000025g0310 Nicotiana tabacum HOM05D002488 ORTHO05D002613 1.6e-11 73.2 163 37.4
TWI23G0090 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 1.6e-11 73.2 140 34.3
GSVIVG01007654001 Vitis vinifera HOM05D002488 ORTHO05D002613 1.6e-11 73.2 48 70.8
Lalb_Chr13g0297591 Lupinus albus HOM05D002488 ORTHO05D002613 2.1e-11 72.8 163 32.5
MD10G1041600 Malus domestica HOM05D002488 ORTHO05D002613 2.1e-11 72.8 150 34.0
Sabra12G0061500 Salix brachista HOM05D002488 ORTHO05D002613 2.1e-11 72.8 139 33.8
FAN19G3027 Fragaria x ananassa HOM05D002488 ORTHO05D002613 3.6e-11 72.0 141 30.5
Sc04g0001530 Simmondsia chinensis HOM05D002488 ORTHO05D002613 3.6e-11 72.0 139 35.3
FAN20G0001 Fragaria x ananassa HOM05D002488 ORTHO05D002613 4.8e-11 71.6 137 32.1
Nn4g22610 Nelumbo nucifera HOM05D002488 ORTHO05D002613 4.8e-11 71.6 163 30.7
FAN24G3477 Fragaria x ananassa HOM05D002488 ORTHO05D002613 6.2e-11 71.2 137 31.4
Lj1g0012260 Lotus japonicus HOM05D002488 ORTHO05D002613 6.2e-11 71.2 144 31.9
MD05G1037800 Malus domestica HOM05D002488 ORTHO05D002613 6.2e-11 71.2 150 32.7
FvH4_2g00400 Fragaria vesca HOM05D002488 ORTHO05D002613 1.1e-10 70.5 137 31.4
Phvul.003G204700 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 1.4e-10 70.1 148 31.8
Potri.015G083800 Populus trichocarpa HOM05D002488 ORTHO05D002613 1.4e-10 70.1 142 33.1
VMungo1215G1015 Vigna mungo HOM05D002488 ORTHO05D002613 1.8e-10 69.7 151 30.5
FAN27G2309 Fragaria x ananassa HOM05D002488 ORTHO05D002613 3.1e-10 68.9 137 31.4
Sed0021301 Sechium edule HOM05D002488 ORTHO05D002613 3.1e-10 68.9 163 31.3
arahy.Tifrunner.gnm1.ann1.ZI7BUH Arachis hypogaea HOM05D002488 ORTHO05D002613 5.3e-10 68.2 138 33.3
Haze_12251 Corylus avellana HOM05D002488 ORTHO05D002613 5.3e-10 68.2 73 46.6
Medtr4g105010 Medicago truncatula HOM05D002488 ORTHO05D002613 6.9e-10 67.8 140 32.9
Gorai.013G119900 Gossypium raimondii HOM05D002488 ORTHO05D002613 1.2e-09 67.0 152 32.9
Sed0014577 Sechium edule HOM05D002488 ORTHO05D002613 1.2e-09 67.0 162 30.9
Cfa009214 Carpinus fangiana HOM05D002488 ORTHO05D002613 1.5e-09 66.6 73 46.6
Potri.012G085600 Populus trichocarpa HOM05D002488 ORTHO05D002613 1.5e-09 66.6 137 33.6
Lj5C129G10 Lonicera japonica HOM05D002488 ORTHO05D002613 2.0e-09 66.2 167 34.7
VMungo1215G0429 Vigna mungo HOM05D002488 ORTHO05D002613 2.0e-09 66.2 103 41.7
Thhalv10013295m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 2.6e-09 65.9 148 33.1
AL6G15760 Arabidopsis lyrata HOM05D002488 ORTHO05D002613 3.4e-09 65.5 148 33.1
arahy.Tifrunner.gnm1.ann1.A1CNSV Arachis hypogaea HOM05D002488 ORTHO05D002613 3.4e-09 65.5 162 31.5
vmacro16644 Vaccinium macrocarpon HOM05D002488 ORTHO05D002613 4.5e-09 65.1 164 29.9
Ciclev10019747m.g Citrus clementina HOM05D002488 ORTHO05D002613 5.8e-09 64.7 140 32.1
QL03p058006 Quercus lobata HOM05D002488 ORTHO05D002613 5.8e-09 64.7 83 47.0
Sp6g37050 Schrenkiella parvula HOM05D002488 ORTHO05D002613 5.8e-09 64.7 148 33.1
CiPaw.05G181700 Carya illinoinensis HOM05D002488 ORTHO05D002613 7.6e-09 64.3 79 45.6
Manes.13G024100 Manihot esculenta HOM05D002488 ORTHO05D002613 7.6e-09 64.3 80 47.5
AT5G05850 Arabidopsis thaliana HOM05D002488 ORTHO05D002613 9.9e-09 63.9 148 31.1
CSS0031964 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 9.9e-09 63.9 144 35.4
BcaC06g32293 Brassica carinata HOM05D002488 ORTHO05D002613 1.3e-08 63.5 68 48.5
Psat4g060240 Pisum sativum HOM05D002488 ORTHO05D002613 1.3e-08 63.5 145 30.3
TPR.G37454 Trifolium pratense HOM05D002488 ORTHO05D002613 1.3e-08 63.5 149 26.8
Phvul.002G149700 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 1.7e-08 63.2 93 43.0
TWI36G0291 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 1.7e-08 63.2 79 44.3
BraA10t45093Z Brassica rapa HOM05D002488 ORTHO05D002613 2.2e-08 62.8 148 32.4
Sp3g09590 Schrenkiella parvula HOM05D002488 ORTHO05D002613 2.2e-08 62.8 60 50.0
BcaNung06796 Brassica carinata HOM05D002488 ORTHO05D002613 2.9e-08 62.4 148 32.4
A10p30520 Brassica napus HOM05D002488 ORTHO05D002613 2.9e-08 62.4 148 32.4
C09p70980 Brassica napus HOM05D002488 ORTHO05D002613 2.9e-08 62.4 148 32.4
BolC9t59862H Brassica oleracea HOM05D002488 ORTHO05D002613 2.9e-08 62.4 148 32.4
Glyma.05G041400 Glycine max HOM05D002488 ORTHO05D002613 2.9e-08 62.4 140 30.7
BraA03t12863Z Brassica rapa HOM05D002488 ORTHO05D002613 3.8e-08 62.0 46 63.0
Carub.0006s0475 Capsella rubella HOM05D002488 ORTHO05D002613 3.8e-08 62.0 147 31.3
Gohir.A03G135100 Gossypium hirsutum HOM05D002488 ORTHO05D002613 4.9e-08 61.6 46 63.0
Gorai.005G178200 Gossypium raimondii HOM05D002488 ORTHO05D002613 4.9e-08 61.6 46 63.0
DCAR_016455 Daucus carota HOM05D002488 ORTHO05D002613 6.4e-08 61.2 59 52.5
THA.LOC104816567 Tarenaya hassleriana HOM05D002488 ORTHO05D002613 6.4e-08 61.2 64 43.8
CARHR085880 Cardamine hirsuta HOM05D002488 ORTHO05D002613 8.4e-08 60.8 101 39.6
Peaxi162Scf00801g00213 Petunia axillaris HOM05D002488 ORTHO05D002613 8.4e-08 60.8 63 54.0
A03p37010 Brassica napus HOM05D002488 ORTHO05D002613 1.1e-07 60.5 46 60.9
Duzib251G0539 Durio zibethinus HOM05D002488 ORTHO05D002613 1.1e-07 60.5 84 42.9
SGA_v2.0_scaffold25G10801 Striga asiatica HOM05D002488 ORTHO05D002613 1.1e-07 60.5 65 50.8
CARHR207400 Cardamine hirsuta HOM05D002488 ORTHO05D002613 1.4e-07 60.1 138 31.9
THA.LOC104825664 Tarenaya hassleriana HOM05D002488 ORTHO05D002613 1.4e-07 60.1 71 50.7
BcaC01g04132 Brassica carinata HOM05D002488 ORTHO05D002613 1.9e-07 59.7 62 50.0
C03p44800 Brassica napus HOM05D002488 ORTHO05D002613 1.9e-07 59.7 62 50.0
BolC3t16743H Brassica oleracea HOM05D002488 ORTHO05D002613 1.9e-07 59.7 62 50.0
ClCG05G025770 Citrullus lanatus HOM05D002488 ORTHO05D002613 1.9e-07 59.7 53 54.7
DCAR_021585 Daucus carota HOM05D002488 ORTHO05D002613 1.9e-07 59.7 60 46.7
Aa31LG3G4660 Aethionema arabicum HOM05D002488 ORTHO05D002613 2.4e-07 59.3 55 54.5
Gohir.D02G158600 Gossypium hirsutum HOM05D002488 ORTHO05D002613 2.4e-07 59.3 46 60.9
BraA05t22593Z Brassica rapa HOM05D002488 ORTHO05D002613 3.2e-07 58.9 44 61.4
SGA_v2.0_scaffold90G27842 Striga asiatica HOM05D002488 ORTHO05D002613 3.2e-07 58.9 65 47.7
Aa31LG11G6860 Aethionema arabicum HOM05D002488 ORTHO05D002613 4.2e-07 58.5 55 50.9
AL3G22840 Arabidopsis lyrata HOM05D002488 ORTHO05D002613 4.2e-07 58.5 95 38.9
Hma1.2p1_2227F.1_g317490 Hydrangea macrophylla HOM05D002488 ORTHO05D002613 4.2e-07 58.5 133 33.1
AT3G11330 Arabidopsis thaliana HOM05D002488 ORTHO05D002613 5.5e-07 58.2 95 37.9
MSTRG.7934 Avicennia marina HOM05D002488 ORTHO05D002613 5.5e-07 58.2 48 54.2
Thhalv10020430m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 5.5e-07 58.2 95 36.8
A05p38020 Brassica napus HOM05D002488 ORTHO05D002613 7.1e-07 57.8 71 49.3
Carub.0003s1066 Capsella rubella HOM05D002488 ORTHO05D002613 7.1e-07 57.8 95 36.8
Aa31LG1G1820 Aethionema arabicum HOM05D002488 ORTHO05D002613 9.3e-07 57.4 57 52.6
BolC5t34343H Brassica oleracea HOM05D002488 ORTHO05D002613 9.3e-07 57.4 71 49.3
CDE02G2064 Ceratophyllum demersum HOM05D002488 ORTHO05D002613 9.3e-07 57.4 139 30.2
Thecc.02G260400 Theobroma cacao HOM05D002488 ORTHO05D002613 9.3e-07 57.4 47 59.6
Ah.02g110840 Amaranthus hybridus HOM05D002488 ORTHO05D002613 1.2e-06 57.0 149 28.9
MELO3C011948.2 Cucumis melo HOM05D002488 ORTHO05D002613 2.1e-06 56.2 49 57.1
SEGI_12322 Sequoiadendron giganteum HOM05D002488 ORTHO05D002613 2.1e-06 56.2 51 52.9
COL.COLO4_25456 Corchorus olitorius HOM05D002488 ORTHO05D002613 2.7e-06 55.8 86 40.7
Dinv24780 Davidia involucrata HOM05D002488 ORTHO05D002613 2.7e-06 55.8 47 55.3
Eucgr.B03282 Eucalyptus grandis HOM05D002488 ORTHO05D002613 2.7e-06 55.8 74 45.9
HPP92_021378 Vanilla planifolia HOM05D002488 ORTHO05D002613 2.7e-06 55.8 162 30.2
Cpa.g.sc33.24 Carica papaya HOM05D002488 ORTHO05D002613 3.5e-06 55.5 128 34.4
CsaV3_5G031080 Cucumis sativus L. HOM05D002488 ORTHO05D002613 3.5e-06 55.5 49 55.1
Migut.K00602 Erythranthe guttata HOM05D002488 ORTHO05D002613 3.5e-06 55.5 48 54.2
EL10Ac5g10659 Beta vulgaris HOM05D002488 ORTHO05D002613 4.6e-06 55.1 78 41.0
C05p56780 Brassica napus HOM05D002488 ORTHO05D002613 4.6e-06 55.1 71 47.9
Ciclev10031488m.g Citrus clementina HOM05D002488 ORTHO05D002613 4.6e-06 55.1 92 39.1
PSO017G5698 Papaver somniferum HOM05D002488 ORTHO05D002613 4.6e-06 55.1 166 31.3
SHI17281 Sapria himalayana HOM05D002488 ORTHO05D002613 4.6e-06 55.1 138 30.4
CARHR147490 Cardamine hirsuta HOM05D002488 ORTHO05D002613 6.0e-06 54.7 72 44.4
TWI39G1221 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 7.9e-06 54.3 142 31.7


User provided reference genes

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