Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G7166.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-56 222.6 141 100.0
CAN.G1783.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.7e-49 199.5 137 79.6
CAN.G2091.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-48 196.8 137 78.1
CAN.G5700.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-48 195.7 137 78.1
CAN.G1484.12 Capsicum annuum HOM05D002496 ORTHO05D002787 2.7e-39 165.6 153 65.4
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-20 103.6 88 68.2
CAN.G575.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-20 103.6 88 68.2
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 3.7e-20 102.1 88 67.0
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 3.7e-20 102.1 88 67.0
CAN.G1703.17 Capsicum annuum HOM05D002500 ORTHO05D002587 8.2e-20 100.9 53 92.5
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 1.2e-18 97.1 88 61.4
CAN.G567.118 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-18 96.7 88 65.9
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 1.3e-17 93.6 88 60.2
Dinv11477 Davidia involucrata HOM05D002496 ORTHO05D002787 1.1e-16 90.5 88 58.0
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 1.4e-16 90.1 88 58.0
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 2.7e-15 85.9 95 50.5
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 2.7e-15 85.9 95 50.5
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 4.7e-15 85.1 88 55.7
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 4.7e-15 85.1 88 56.8
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 6.1e-15 84.7 90 54.4
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 6.1e-15 84.7 88 55.7
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 7.9e-15 84.3 87 56.3
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 7.9e-15 84.3 91 53.8
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 7.9e-15 84.3 88 54.5
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 1.4e-14 83.6 88 56.8
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 1.4e-14 83.6 91 52.7
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 1.4e-14 83.6 88 54.5
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 1.8e-14 83.2 88 55.7
Lj2A763G36 Lonicera japonica HOM05D002496 ORTHO05D002787 1.8e-14 83.2 88 52.3
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 2.3e-14 82.8 91 50.5
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 2.3e-14 82.8 91 52.7
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 3.0e-14 82.4 91 51.6
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 3.0e-14 82.4 88 53.4
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 3.0e-14 82.4 88 53.4
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 3.0e-14 82.4 91 49.5
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 3.9e-14 82.0 96 47.9
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 5.2e-14 81.6 91 51.6
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 5.2e-14 81.6 88 51.1
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 5.2e-14 81.6 88 53.4
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 6.7e-14 81.3 86 54.7
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 8.8e-14 80.9 91 50.5
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 2.0e-13 79.7 91 49.5
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 3.3e-13 79.0 87 51.7
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 4.4e-13 78.6 88 50.0
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 5.7e-13 78.2 48 81.2
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 7.4e-13 77.8 88 50.0
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 7.4e-13 77.8 88 51.1
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 7.4e-13 77.8 88 50.0
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 7.4e-13 77.8 91 50.5
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 9.7e-13 77.4 88 50.0
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 9.7e-13 77.4 87 50.6
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 1.3e-12 77.0 88 51.1
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 1.3e-12 77.0 88 51.1
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 1.3e-12 77.0 91 51.6
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 1.3e-12 77.0 91 46.2
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 1.7e-12 76.6 91 47.3
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 1.7e-12 76.6 88 52.3
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 2.2e-12 76.3 88 52.3
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 2.2e-12 76.3 88 48.9
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 2.2e-12 76.3 90 48.9
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 2.2e-12 76.3 88 47.7
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 2.8e-12 75.9 88 47.7
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 3.7e-12 75.5 91 47.3
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 3.7e-12 75.5 91 46.2
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 6.3e-12 74.7 91 48.4
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 8.2e-12 74.3 91 50.5
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 8.2e-12 74.3 87 50.6
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 8.2e-12 74.3 91 49.5
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 1.1e-11 73.9 87 50.6
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 1.1e-11 73.9 87 50.6
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 1.1e-11 73.9 91 46.2
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 1.1e-11 73.9 88 47.7
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 1.4e-11 73.6 91 49.5
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.4e-11 73.6 91 49.5
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 1.4e-11 73.6 87 47.1
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 1.4e-11 73.6 88 50.0
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 1.8e-11 73.2 91 47.3
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.8e-11 73.2 86 47.7
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 2.4e-11 72.8 100 43.0
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 3.1e-11 72.4 87 47.1
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 4.1e-11 72.0 91 46.2
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 4.1e-11 72.0 88 47.7
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 7.0e-11 71.2 91 46.2
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 7.0e-11 71.2 105 42.9
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 1.2e-10 70.5 91 42.9
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 1.2e-10 70.5 109 41.3
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 1.2e-10 70.5 91 41.8
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 1.6e-10 70.1 91 44.0
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 2.0e-10 69.7 91 41.8
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 2.0e-10 69.7 91 41.8
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 2.6e-10 69.3 88 44.3
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 3.5e-10 68.9 88 45.5
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 4.5e-10 68.6 91 39.6
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 4.5e-10 68.6 100 41.0
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 4.5e-10 68.6 87 47.1
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 5.9e-10 68.2 91 41.8
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 5.9e-10 68.2 91 41.8
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 5.9e-10 68.2 91 44.0
C03p92650 Brassica napus HOM05D002496 ORTHO05D002787 7.7e-10 67.8 91 42.9
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 1.0e-09 67.4 88 47.7
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.7e-09 66.6 88 39.8
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 2.9e-09 65.9 88 44.3
SEGI_26512 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 6.5e-09 64.7 87 40.2
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 1.1e-08 63.9 91 38.5
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 1.1e-08 63.9 87 40.2
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 1.1e-08 63.9 98 45.9
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 1.9e-08 63.2 91 37.4
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 2.5e-08 62.8 91 40.7
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 4.2e-08 62.0 88 40.9
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 7.2e-08 61.2 88 40.9
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 2.1e-07 59.7 91 36.3
VMungo0251G1507 Vigna mungo HOM05D002496 ORTHO05D002787 2.1e-07 59.7 79 46.8
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 2.1e-07 59.7 82 42.7
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 6.1e-07 58.2 103 36.9
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 5.2e-06 55.1 87 35.6


User provided reference genes

Program Settings