Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G715.3 Capsicum annuum HOM05D003472 ORTHO05D004200 1.1e-57 226.5 117 100.0
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.4e-17 93.2 133 43.6
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 6.0e-16 87.8 132 42.4
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 6.0e-16 87.8 146 40.4
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 2.3e-15 85.9 134 41.8
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 2.3e-15 85.9 134 41.8
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 1.1e-14 83.6 133 41.4
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.5e-14 83.2 146 38.4
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 2.5e-14 82.4 134 40.3
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 3.3e-14 82.0 123 39.0
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 5.6e-14 81.3 134 39.6
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 9.5e-14 80.5 134 37.3
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 2.8e-13 79.0 141 36.2
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 3.6e-13 78.6 134 36.6
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 3.6e-13 78.6 134 36.6
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 8.1e-13 77.4 134 36.6
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 8.1e-13 77.4 134 35.1
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 1.4e-12 76.6 136 36.0
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 1.4e-12 76.6 134 37.3
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.3e-12 75.9 134 35.8
CAN.G567.64 Capsicum annuum HOM05D003472 ORTHO05D004200 3.1e-12 75.5 50 76.0
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 3.1e-12 75.5 133 36.8
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 3.1e-12 75.5 134 35.8
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 4.0e-12 75.1 151 34.4
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 4.0e-12 75.1 134 35.1
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 4.0e-12 75.1 134 35.1
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 6.8e-12 74.3 134 33.6
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 6.8e-12 74.3 134 35.1
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 6.8e-12 74.3 134 35.1
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 8.9e-12 73.9 134 34.3
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 8.9e-12 73.9 134 34.3
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 8.9e-12 73.9 134 32.8
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 1.2e-11 73.6 134 33.6
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.2e-11 73.6 134 32.8
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.2e-11 73.6 134 32.8
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.2e-11 73.6 134 32.8
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 1.2e-11 73.6 134 35.8
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.5e-11 73.2 145 33.8
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 1.5e-11 73.2 134 33.6
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 2.0e-11 72.8 134 34.3
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.0e-11 72.8 114 37.7
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 2.0e-11 72.8 134 33.6
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 2.6e-11 72.4 134 33.6
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 2.6e-11 72.4 133 35.3
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 3.4e-11 72.0 134 32.1
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 3.4e-11 72.0 134 32.8
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 4.4e-11 71.6 134 33.6
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 4.4e-11 71.6 134 35.1
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 4.4e-11 71.6 134 32.8
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 4.4e-11 71.6 134 34.3
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 4.4e-11 71.6 133 34.6
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 5.8e-11 71.2 134 32.8
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 5.8e-11 71.2 139 33.1
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 5.8e-11 71.2 134 32.1
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 5.8e-11 71.2 134 32.1
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 5.8e-11 71.2 134 32.1
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 5.8e-11 71.2 134 34.3
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 7.5e-11 70.9 133 34.6
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 9.9e-11 70.5 133 33.8
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 9.9e-11 70.5 134 32.1
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 9.9e-11 70.5 136 31.6
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 9.9e-11 70.5 134 32.1
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 1.3e-10 70.1 133 33.8
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 1.3e-10 70.1 133 33.8
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 1.3e-10 70.1 133 34.6
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.3e-10 70.1 134 32.1
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.3e-10 70.1 134 34.3
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 1.3e-10 70.1 133 33.1
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.7e-10 69.7 133 33.8
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 1.7e-10 69.7 134 30.6
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 1.7e-10 69.7 134 29.9
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 1.7e-10 69.7 134 32.1
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 2.2e-10 69.3 134 32.8
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 2.2e-10 69.3 134 34.3
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 2.9e-10 68.9 133 33.1
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 3.7e-10 68.6 134 33.6
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 3.7e-10 68.6 134 32.1
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 3.7e-10 68.6 133 33.8
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 3.7e-10 68.6 134 31.3
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 4.9e-10 68.2 134 32.1
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 4.9e-10 68.2 134 32.1
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 4.9e-10 68.2 134 32.1
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 8.3e-10 67.4 134 33.6
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 8.3e-10 67.4 134 32.1
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 8.3e-10 67.4 89 47.2
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 1.1e-09 67.0 134 31.3
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 1.1e-09 67.0 134 31.3
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 1.1e-09 67.0 133 33.8
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 1.1e-09 67.0 134 30.6
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 1.1e-09 67.0 134 30.6
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 1.4e-09 66.6 133 33.8
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 1.9e-09 66.2 133 31.6
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 1.9e-09 66.2 134 31.3
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 2.4e-09 65.9 125 34.4
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 2.4e-09 65.9 134 31.3
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 3.2e-09 65.5 136 31.6
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 3.2e-09 65.5 134 31.3
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 3.2e-09 65.5 133 30.8
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.2e-09 65.5 133 30.8
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.2e-09 65.5 133 30.8
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 3.2e-09 65.5 133 30.8
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 3.2e-09 65.5 115 37.4
unitig_1.g29358 Utricularia gibba HOM05D003472 ORTHO05D004200 3.2e-09 65.5 52 65.4
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 4.1e-09 65.1 133 31.6
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 5.4e-09 64.7 134 32.1
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 7.1e-09 64.3 133 30.8
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 1.2e-08 63.5 134 30.6
Dinv06031 Davidia involucrata HOM05D003472 ORTHO05D004200 1.2e-08 63.5 44 70.5
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.2e-08 63.5 44 70.5
Oeu009993.1 Olea europaea HOM05D003472 ORTHO05D004200 2.1e-08 62.8 61 55.7
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 2.1e-08 62.8 135 30.4
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 2.7e-08 62.4 73 47.9
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 3.5e-08 62.0 134 27.6
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 3.5e-08 62.0 134 31.3
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 6.0e-08 61.2 133 31.6
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 7.8e-08 60.8 123 35.8
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 7.8e-08 60.8 46 58.7
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 7.8e-08 60.8 46 63.0
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 1.3e-07 60.1 72 44.4
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.3e-07 60.1 45 60.0
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 1.3e-07 60.1 43 62.8
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.0e-07 58.9 133 29.3
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.0e-07 58.9 61 47.5
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.0e-07 58.9 61 47.5
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 3.9e-07 58.5 43 60.5
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 5.1e-07 58.2 134 29.9
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 5.1e-07 58.2 134 29.9
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 5.1e-07 58.2 134 29.9
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 5.1e-07 58.2 134 29.9
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 5.1e-07 58.2 134 29.9
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 5.1e-07 58.2 134 29.9
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 5.1e-07 58.2 134 29.9
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 5.1e-07 58.2 72 40.3
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 6.6e-07 57.8 134 29.1
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 6.6e-07 57.8 134 29.1
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.1e-06 57.0 133 30.1
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 1.5e-06 56.6 134 29.9
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 2.5e-06 55.8 44 61.4
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 3.3e-06 55.5 134 28.4
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.3e-06 55.5 72 38.9
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.3e-06 55.5 72 40.3
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 5.6e-06 54.7 134 28.4
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 5.6e-06 54.7 134 28.4
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 5.6e-06 54.7 134 28.4
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 9.5e-06 53.9 134 28.4
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 9.5e-06 53.9 134 28.4
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 9.5e-06 53.9 48 52.1
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 9.5e-06 53.9 48 52.1
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 9.5e-06 53.9 48 52.1


User provided reference genes

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