Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.4e-104 382.9 183 100.0
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 2.1e-92 342.4 183 87.4
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.3e-86 322.4 179 86.0
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.9e-85 319.3 183 82.5
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 7.2e-85 317.4 183 82.0
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 9.5e-85 317.0 185 82.2
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 3.7e-81 305.1 177 76.3
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.8e-80 302.8 183 74.3
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.6e-79 299.7 190 73.7
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.6e-79 299.7 190 73.7
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 8.6e-78 293.9 177 73.4
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 4.3e-77 291.6 178 75.3
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.1e-76 289.3 183 68.3
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.4e-75 286.6 185 70.3
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.4e-75 286.6 183 73.2
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.8e-75 286.2 183 73.8
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 1.2e-74 283.5 183 67.2
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 2.6e-74 282.3 179 69.8
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 7.5e-74 280.8 172 73.8
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 1.7e-73 279.6 174 70.7
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 3.7e-73 278.5 183 71.0
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 3.7e-73 278.5 181 69.6
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 4.9e-73 278.1 181 69.6
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.9e-73 278.1 153 86.9
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.4e-72 276.6 178 70.2
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 1.8e-72 276.2 183 69.9
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.8e-72 276.2 181 67.4
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 2.4e-72 275.8 183 69.9
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.1e-72 275.0 181 69.1
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 4.1e-72 275.0 181 69.1
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 4.1e-72 275.0 178 68.5
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 5.4e-72 274.6 177 71.8
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 7.0e-72 274.2 179 68.2
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 7.0e-72 274.2 182 69.2
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.6e-71 273.1 184 66.8
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.0e-71 272.7 181 69.1
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 4.6e-71 271.6 182 70.3
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 4.6e-71 271.6 179 68.7
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.3e-70 270.0 176 71.0
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 3.9e-70 268.5 178 67.4
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 3.9e-70 268.5 185 65.9
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 5.0e-70 268.1 184 64.1
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 5.0e-70 268.1 172 67.4
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 6.6e-70 267.7 184 66.8
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 6.6e-70 267.7 183 66.1
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 6.6e-70 267.7 183 65.6
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 8.6e-70 267.3 185 67.6
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.1e-69 266.9 188 67.6
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 1.9e-69 266.2 180 63.9
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.9e-69 266.2 181 66.3
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 2.5e-69 265.8 183 65.0
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 3.3e-69 265.4 183 66.1
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 3.3e-69 265.4 178 68.0
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 4.3e-69 265.0 182 63.7
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 7.3e-69 264.2 180 66.1
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 9.5e-69 263.8 183 66.1
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 9.5e-69 263.8 182 62.6
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 9.5e-69 263.8 181 65.2
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 1.2e-68 263.5 181 64.6
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.6e-68 263.1 176 68.2
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 6.2e-68 261.2 180 66.7
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 8.0e-68 260.8 178 67.4
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 8.0e-68 260.8 177 67.2
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.4e-67 260.0 180 67.2
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.4e-67 260.0 175 66.9
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 2.3e-67 259.2 180 66.1
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 4.0e-67 258.5 179 66.5
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 4.0e-67 258.5 180 65.0
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 6.8e-67 257.7 180 66.7
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 1.2e-66 256.9 180 62.2
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.5e-66 256.5 177 67.8
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.5e-66 256.5 177 67.2
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 4.4e-66 255.0 178 66.3
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 7.5e-66 254.2 180 65.6
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 9.8e-66 253.8 173 68.8
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.3e-65 253.4 181 65.7
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 1.3e-65 253.4 178 66.9
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 4.9e-65 251.5 165 69.7
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.9e-64 249.6 175 65.1
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 5.4e-64 248.1 180 64.4
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.0e-63 246.1 175 64.6
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 2.0e-63 246.1 156 70.5
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 2.0e-63 246.1 182 61.0
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.3e-62 243.4 177 61.0
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.3e-62 242.7 154 69.5
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 1.1e-61 240.4 166 66.9
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.5e-61 239.2 151 69.5
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 2.5e-61 239.2 177 58.2
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 4.3e-61 238.4 166 66.3
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 4.3e-61 238.4 176 59.7
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 4.3e-61 238.4 173 59.5
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 4.3e-61 238.4 173 59.5
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 8.9e-59 230.7 179 59.8
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.2e-58 230.3 163 64.4
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.2e-58 230.3 154 67.5
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 4.4e-58 228.4 179 59.2
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 2.2e-57 226.1 172 60.5
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 8.3e-57 224.2 175 57.7
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 5.4e-56 221.5 180 58.3
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 2.7e-55 219.2 161 62.1
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.7e-54 216.5 149 65.1
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 2.5e-53 212.6 173 58.4
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 4.4e-50 201.8 172 55.2
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 1.7e-49 199.9 161 57.8
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 6.4e-49 198.0 186 49.5
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.4e-48 196.1 179 48.6
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.9e-46 188.7 175 46.3
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 6.6e-46 188.0 182 49.5
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.8e-44 182.6 128 62.5
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 4.4e-42 175.3 140 60.0
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 2.5e-37 159.5 123 57.7
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 5.8e-34 148.3 178 41.6
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.9e-30 135.6 130 53.1
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 4.3e-21 105.5 75 65.3
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 2.8e-20 102.8 173 34.1
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 1.1e-19 100.9 153 39.2
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 3.9e-14 82.4 178 33.7
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 5.1e-14 82.0 97 43.3
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 7.4e-13 78.2 59 52.5
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 1.6e-07 60.5 173 26.6
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 6.1e-07 58.5 178 28.1
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 6.1e-07 58.5 184 26.6
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 7.9e-07 58.2 183 26.2
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 7.9e-07 58.2 180 26.7
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.0e-06 57.8 176 26.7
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.0e-06 57.8 186 26.9
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.0e-06 57.8 186 26.9
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 1.0e-06 57.8 186 26.9
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.0e-06 57.8 180 26.7
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 1.0e-06 57.8 183 26.2
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 1.0e-06 57.8 157 28.7
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 1.0e-06 57.8 180 26.7
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 1.4e-06 57.4 178 27.5
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 1.4e-06 57.4 157 28.7
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 1.4e-06 57.4 157 28.7
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 1.4e-06 57.4 157 28.7
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.4e-06 57.4 189 26.5
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 1.8e-06 57.0 178 25.8
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 1.8e-06 57.0 178 25.8
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.8e-06 57.0 171 28.1
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 2.3e-06 56.6 182 26.9
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 2.3e-06 56.6 184 25.5
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 3.0e-06 56.2 178 25.8
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 3.0e-06 56.2 178 25.8
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 3.0e-06 56.2 178 25.8
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 3.0e-06 56.2 176 26.1
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 3.0e-06 56.2 180 26.1
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 3.0e-06 56.2 159 27.7
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.0e-06 56.2 178 25.3
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 3.0e-06 56.2 178 27.5
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 3.9e-06 55.8 157 27.4
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 3.9e-06 55.8 177 26.6
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 5.1e-06 55.5 178 27.0
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 5.1e-06 55.5 189 25.9
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 5.1e-06 55.5 159 27.0
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 8.8e-06 54.7 176 27.3
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 8.8e-06 54.7 184 25.5
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 8.8e-06 54.7 165 29.1
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 8.8e-06 54.7 187 26.7
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 8.8e-06 54.7 185 25.9
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 8.8e-06 54.7 173 26.0
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 8.8e-06 54.7 185 25.9


User provided reference genes

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