Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G683.3 Capsicum annuum HOM05D024055 ORTHO05D005042 3.0e-57 224.9 113 100.0
CAN.G751.3 Capsicum annuum HOM05D000135 ORTHO05D005042 2.0e-21 105.9 67 79.1
Sopen10g027230 Solanum pennellii HOM05D000135 ORTHO05D005042 7.8e-21 104.0 67 79.1
Nitab4.5_0003037g0110 Nicotiana tabacum HOM05D000135 ORTHO05D005042 1.5e-19 99.8 96 56.2
PGSC0003DMG400027692 Solanum tuberosum HOM05D000135 ORTHO05D005042 9.5e-19 97.1 67 74.6
Nitab4.5_0002139g0010 Nicotiana tabacum HOM05D000135 ORTHO05D005042 1.6e-18 96.3 67 71.6
Peaxi162Scf00374g00053 Petunia axillaris HOM05D000135 ORTHO05D005042 8.0e-18 94.0 67 70.1
Dinv25375 Davidia involucrata HOM05D000135 ORTHO05D005042 1.7e-15 86.3 67 61.2
Lj2C55T5 Lonicera japonica HOM05D000135 ORTHO05D005042 2.9e-15 85.5 67 62.7
Peaxi162Scf00732g00004 Petunia axillaris HOM05D000135 ORTHO05D005042 4.9e-15 84.7 67 62.7
CSS0001509 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D005042 1.4e-14 83.2 67 58.2
Hma1.2p1_0174F.1_g076570 Hydrangea macrophylla HOM05D000135 ORTHO05D005042 1.4e-14 83.2 67 56.7
Hma1.2p1_0537F.1_g174170 Hydrangea macrophylla HOM05D000135 ORTHO05D005042 1.9e-14 82.8 67 58.2
Nitab4.5_0000356g0070 Nicotiana tabacum HOM05D000135 ORTHO05D005042 1.9e-14 82.8 67 61.2
Rhsim05G0234300 Rhododendron simsii HOM05D000135 ORTHO05D005042 4.1e-14 81.6 67 58.2
Nitab4.5_0002785g0040 Nicotiana tabacum HOM05D000135 ORTHO05D005042 5.4e-14 81.3 63 63.5
unitig_8.g4470 Utricularia gibba HOM05D000135 ORTHO05D005042 5.4e-14 81.3 67 61.2
CSS0037777 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D005042 7.0e-14 80.9 67 56.7
Migut.J00006 Erythranthe guttata HOM05D000135 ORTHO05D005042 7.0e-14 80.9 96 42.7
Dinv16930 Davidia involucrata HOM05D000135 ORTHO05D005042 9.2e-14 80.5 63 58.7
QL07p030597 Quercus lobata HOM05D000135 ORTHO05D005042 2.7e-13 79.0 68 55.9
CiPaw.09G225400 Carya illinoinensis HOM05D000135 ORTHO05D005042 4.6e-13 78.2 67 53.7
QL07p031451 Quercus lobata HOM05D000135 ORTHO05D005042 1.0e-12 77.0 68 54.4
MSTRG.5477 Avicennia marina HOM05D000135 ORTHO05D005042 1.3e-12 76.6 67 58.2
CANSAT21G0108 Cannabis sativa HOM05D000135 ORTHO05D005042 1.3e-12 76.6 67 53.7
unitig_578.g15919 Utricularia gibba HOM05D000135 ORTHO05D005042 1.3e-12 76.6 67 59.7
Thhalv10001042m.g Eutrema salsugineum HOM05D000135 ORTHO05D005042 2.3e-12 75.9 63 55.6
HanXRQChr16g0512251 Helianthus annuus HOM05D000135 ORTHO05D005042 2.3e-12 75.9 90 42.2
Lsat_1_v5_gn_9_39941 Lactuca sativa HOM05D000135 ORTHO05D005042 2.3e-12 75.9 69 50.7
Potri.016G142000 Populus trichocarpa HOM05D000135 ORTHO05D005042 2.3e-12 75.9 67 53.7
unitig_27.g24898 Utricularia gibba HOM05D000135 ORTHO05D005042 2.3e-12 75.9 67 53.7
DCAR_023958 Daucus carota HOM05D000135 ORTHO05D005042 3.0e-12 75.5 67 53.7
ECA240G2333 Erigeron canadensis HOM05D000135 ORTHO05D005042 3.0e-12 75.5 94 39.4
HanXRQChr15g0464591 Helianthus annuus HOM05D000135 ORTHO05D005042 5.0e-12 74.7 69 49.3
Cpa.g.sc60.60 Carica papaya HOM05D000135 ORTHO05D005042 6.6e-12 74.3 67 55.2
Oeu026923.1 Olea europaea HOM05D000135 ORTHO05D005042 6.6e-12 74.3 67 50.7
ECA172G0002 Erigeron canadensis HOM05D000402 ORTHO05D000263 1.1e-11 73.6 69 47.8
Cfa016992 Carpinus fangiana HOM05D000135 ORTHO05D005042 1.5e-11 73.2 67 49.3
Haze_21213 Corylus avellana HOM05D000135 ORTHO05D005042 1.5e-11 73.2 67 50.7
HanXRQChr10g0286731 Helianthus annuus HOM05D000135 ORTHO05D005042 1.5e-11 73.2 69 47.8
Sabra04G0158200 Salix brachista HOM05D000135 ORTHO05D005042 1.9e-11 72.8 67 52.2
TPR.G24286 Trifolium pratense HOM05D000135 ORTHO05D005042 1.9e-11 72.8 67 50.7
A06p47180 Brassica napus HOM05D000135 ORTHO05D005042 2.5e-11 72.4 63 52.4
Lsat_1_v5_gn_5_153780 Lactuca sativa HOM05D000135 ORTHO05D005042 3.3e-11 72.0 67 49.3
Medtr7g074240 Medicago truncatula HOM05D000135 ORTHO05D005042 3.3e-11 72.0 67 49.3
Nn2g10212 Nelumbo nucifera HOM05D000135 ORTHO05D005042 3.3e-11 72.0 67 50.7
CARHR178620 Cardamine hirsuta HOM05D000135 ORTHO05D005042 4.3e-11 71.6 63 52.4
Cc06_g00140 Coffea canephora HOM05D000135 ORTHO05D005042 4.3e-11 71.6 67 50.7
MELO3C009094.2 Cucumis melo HOM05D000135 ORTHO05D005042 4.3e-11 71.6 67 53.7
BcaC06g34551 Brassica carinata HOM05D000135 ORTHO05D005042 5.6e-11 71.2 63 50.8
C07p27250 Brassica napus HOM05D000135 ORTHO05D005042 5.6e-11 71.2 63 50.8
BolC7t43253H Brassica oleracea HOM05D000135 ORTHO05D005042 5.6e-11 71.2 63 50.8
CsaV3_3G032970 Cucumis sativus L. HOM05D000135 ORTHO05D005042 5.6e-11 71.2 67 53.7
Psat3g116960 Pisum sativum HOM05D000135 ORTHO05D005042 5.6e-11 71.2 67 49.3
RcHm_v2.0_Chr3g0459681 Rosa chinensis HOM05D000135 ORTHO05D005042 5.6e-11 71.2 63 49.2
Atru.chr8.51 Acer truncatum HOM05D000135 ORTHO05D005042 7.3e-11 70.9 67 55.2
Potri.006G112500 Populus trichocarpa HOM05D000135 ORTHO05D005042 7.3e-11 70.9 67 49.3
BcaB07g30522 Brassica carinata HOM05D000135 ORTHO05D005042 9.5e-11 70.5 63 50.8
BraA06t27589Z Brassica rapa HOM05D000135 ORTHO05D005042 9.5e-11 70.5 63 52.4
HanXRQChr01g0000351 Helianthus annuus HOM05D000135 ORTHO05D005042 9.5e-11 70.5 67 47.8
BcaC03g16665 Brassica carinata HOM05D000135 ORTHO05D005042 1.2e-10 70.1 63 49.2
BcaC06g31614 Brassica carinata HOM05D000135 ORTHO05D005042 1.2e-10 70.1 63 49.2
A02p28430 Brassica napus HOM05D000135 ORTHO05D005042 1.2e-10 70.1 63 49.2
C02p45040 Brassica napus HOM05D000135 ORTHO05D005042 1.2e-10 70.1 63 49.2
BolC2t10538H Brassica oleracea HOM05D000135 ORTHO05D005042 1.2e-10 70.1 63 49.2
BraA02t07878Z Brassica rapa HOM05D000135 ORTHO05D005042 1.2e-10 70.1 63 49.2
Ca_07800_v3 Cicer arietinum L. HOM05D000135 ORTHO05D005042 1.2e-10 70.1 67 47.8
Lsat_1_v5_gn_8_108500 Lactuca sativa HOM05D000135 ORTHO05D005042 1.2e-10 70.1 67 46.3
Sp7g18850 Schrenkiella parvula HOM05D000135 ORTHO05D005042 1.6e-10 69.7 86 40.7
Aa31LG9G8730 Aethionema arabicum HOM05D000135 ORTHO05D005042 2.1e-10 69.3 63 50.8
BcaNung04153 Brassica carinata HOM05D000135 ORTHO05D005042 2.8e-10 68.9 63 52.4
ClCG10G022840 Citrullus lanatus HOM05D000135 ORTHO05D005042 2.8e-10 68.9 67 50.7
FAN02G2553 Fragaria x ananassa HOM05D000135 ORTHO05D005042 2.8e-10 68.9 63 44.4
Sabra06G0087600 Salix brachista HOM05D009827 ORTHO05D011093 2.8e-10 68.9 63 50.8
TAR633G0043 Trochodendron aralioides HOM05D000135 ORTHO05D005042 2.8e-10 68.9 67 52.2
GSVIVG01029852001 Vitis vinifera HOM05D000135 ORTHO05D005042 2.8e-10 68.9 67 52.2
AT5G44460 Arabidopsis thaliana HOM05D000135 ORTHO05D005042 3.6e-10 68.6 63 47.6
BcaNung05681 Brassica carinata HOM05D000135 ORTHO05D005042 3.6e-10 68.6 63 49.2
A03p52460 Brassica napus HOM05D000135 ORTHO05D005042 4.7e-10 68.2 63 50.8
Carub.0007s2067 Capsella rubella HOM05D000135 ORTHO05D005042 4.7e-10 68.2 63 50.8
FvH4_6g09300 Fragaria vesca HOM05D000135 ORTHO05D005042 4.7e-10 68.2 63 44.4
FAN05G4538 Fragaria x ananassa HOM05D000135 ORTHO05D005042 4.7e-10 68.2 63 44.4
FAN09G2307 Fragaria x ananassa HOM05D000135 ORTHO05D005042 4.7e-10 68.2 63 44.4
Glyma.09G270900 Glycine max HOM05D000135 ORTHO05D005042 4.7e-10 68.2 67 50.7
Lj1g0023690 Lotus japonicus HOM05D000135 ORTHO05D005042 4.7e-10 68.2 67 46.3
Eucgr.K01308 Eucalyptus grandis HOM05D000135 ORTHO05D005042 6.2e-10 67.8 67 49.3
Thhalv10026325m.g Eutrema salsugineum HOM05D000135 ORTHO05D005042 6.2e-10 67.8 63 49.2
Lj3P939T25 Lonicera japonica HOM05D000135 ORTHO05D005042 6.2e-10 67.8 55 56.4
Oeu027188.1 Olea europaea HOM05D000135 ORTHO05D005042 6.2e-10 67.8 63 49.2
Thecc.04G147000 Theobroma cacao HOM05D000135 ORTHO05D005042 6.2e-10 67.8 63 49.2
MBI03_g14782_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D005042 8.1e-10 67.4 62 51.6
Prupe.6G298900 Prunus persica HOM05D000135 ORTHO05D005042 8.1e-10 67.4 67 46.3
VMungo1383G3572 Vigna mungo HOM05D000135 ORTHO05D005042 8.1e-10 67.4 67 47.8
AL8G15390 Arabidopsis lyrata HOM05D000135 ORTHO05D005042 1.1e-09 67.0 63 46.0
FAN14G5935 Fragaria x ananassa HOM05D000135 ORTHO05D005042 1.1e-09 67.0 63 42.9
Manes.08G167400 Manihot esculenta HOM05D000135 ORTHO05D005042 1.1e-09 67.0 67 46.3
BcaNung05060 Brassica carinata HOM05D000135 ORTHO05D005042 1.4e-09 66.6 63 49.2
C07p50910 Brassica napus HOM05D000135 ORTHO05D005042 1.4e-09 66.6 63 49.2
BolC7t45591H Brassica oleracea HOM05D000135 ORTHO05D005042 1.4e-09 66.6 63 49.2
Ciclev10012776m.g Citrus clementina HOM05D000135 ORTHO05D005042 1.4e-09 66.6 69 47.8
Manes.09G120700 Manihot esculenta HOM05D000135 ORTHO05D005042 1.4e-09 66.6 63 49.2
PGR004G1277 Punica granatum HOM05D000135 ORTHO05D005042 1.4e-09 66.6 63 54.0
AL7G33370 Arabidopsis lyrata HOM05D000135 ORTHO05D005042 1.8e-09 66.2 63 47.6
BcaC09g51311 Brassica carinata HOM05D000135 ORTHO05D005042 1.8e-09 66.2 63 49.2
C01p14510 Brassica napus HOM05D000135 ORTHO05D005042 1.8e-09 66.2 63 49.2
BolC1t01407H Brassica oleracea HOM05D000135 ORTHO05D005042 1.8e-09 66.2 63 49.2
THA.LOC104812148 Tarenaya hassleriana HOM05D000135 ORTHO05D005042 1.8e-09 66.2 63 47.6
Aa31LG6G2870 Aethionema arabicum HOM05D000135 ORTHO05D005042 2.3e-09 65.9 63 47.6
AT4G20780 Arabidopsis thaliana HOM05D000135 ORTHO05D005042 2.3e-09 65.9 63 47.6
BraA03t14324Z Brassica rapa HOM05D000135 ORTHO05D005042 3.1e-09 65.5 63 47.6
Phvul.008G078500 Phaseolus vulgaris HOM05D000135 ORTHO05D005042 3.1e-09 65.5 67 46.3
Carub.0008s0403 Capsella rubella HOM05D000135 ORTHO05D005042 4.0e-09 65.1 63 44.4
Nn6g33928 Nelumbo nucifera HOM05D000058 ORTHO05D005042 4.0e-09 65.1 62 50.0
PSO339G4947 Papaver somniferum HOM05D000135 ORTHO05D005042 4.0e-09 65.1 62 53.2
PSO384G3298 Papaver somniferum HOM05D000135 ORTHO05D005042 4.0e-09 65.1 62 53.2
Sed0006658 Sechium edule HOM05D000135 ORTHO05D005042 4.0e-09 65.1 67 46.3
BcaB03g11676 Brassica carinata HOM05D000135 ORTHO05D005042 5.2e-09 64.7 67 46.3
BcaC01g00677 Brassica carinata HOM05D000135 ORTHO05D005042 5.2e-09 64.7 67 46.3
A08p14920 Brassica napus HOM05D000135 ORTHO05D005042 5.2e-09 64.7 67 46.3
C03p83000 Brassica napus HOM05D000135 ORTHO05D005042 5.2e-09 64.7 67 46.3
BolC3t20581H Brassica oleracea HOM05D000135 ORTHO05D005042 5.2e-09 64.7 67 46.3
BraA08t33474Z Brassica rapa HOM05D000135 ORTHO05D005042 5.2e-09 64.7 67 46.3
CARHR227320 Cardamine hirsuta HOM05D000135 ORTHO05D005042 5.2e-09 64.7 63 46.0
Sc20g0007330 Simmondsia chinensis HOM05D000135 ORTHO05D005042 8.9e-09 63.9 67 46.3
Sc20g0007540 Simmondsia chinensis HOM05D000135 ORTHO05D005042 8.9e-09 63.9 67 46.3
Sed0027205 Sechium edule HOM05D000135 ORTHO05D005042 1.2e-08 63.5 67 46.3
Nn1g03907 Nelumbo nucifera HOM05D000135 ORTHO05D005042 1.5e-08 63.2 61 49.2
MD12G1194200 Malus domestica HOM05D000135 ORTHO05D005042 2.0e-08 62.8 62 45.2
MD04G1178900 Malus domestica HOM05D000135 ORTHO05D005042 2.6e-08 62.4 62 45.2
Duzib151G0137 Durio zibethinus HOM05D000135 ORTHO05D005042 3.4e-08 62.0 63 44.4
A01p12190 Brassica napus HOM05D000135 ORTHO05D005042 4.4e-08 61.6 63 47.6
BraA01t01161Z Brassica rapa HOM05D000135 ORTHO05D005042 4.4e-08 61.6 63 47.6
SGA_v2.0_scaffold85G26581 Striga asiatica HOM05D000135 ORTHO05D005042 4.4e-08 61.6 63 50.8
CAN.G765.15 Capsicum annuum HOM05D024055 ORTHO05D000146 5.8e-08 61.2 28 100.0
Nn5g26764 Nelumbo nucifera HOM05D000135 ORTHO05D005042 5.8e-08 61.2 62 46.8
TPR.G22098 Trifolium pratense HOM05D000135 ORTHO05D005042 5.8e-08 61.2 59 49.2
Zm00001eb111620 Zea mays HOM05D000135 ORTHO05D005042 7.5e-08 60.8 72 44.4
Ah.06g184220 Amaranthus hybridus HOM05D000135 ORTHO05D005042 9.9e-08 60.5 70 45.7
EL10Ac7g17146 Beta vulgaris HOM05D000135 ORTHO05D005042 1.3e-07 60.1 72 47.2
CAN.G322.75 Capsicum annuum HOM05D001803 ORTHO05D001686 1.3e-07 60.1 29 96.6
Os08g0144100 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D005042 1.3e-07 60.1 72 44.4
Zm00001eb330780 Zea mays HOM05D000135 ORTHO05D005042 1.3e-07 60.1 72 44.4
CAN.G1144.8 Capsicum annuum HOM05D000738 ORTHO05D019834 1.7e-07 59.7 29 93.1
Gohir.A02G092300 Gossypium hirsutum HOM05D000135 ORTHO05D005042 2.2e-07 59.3 63 39.7
Gohir.D02G110200 Gossypium hirsutum HOM05D000135 ORTHO05D005042 2.2e-07 59.3 63 39.7
Gorai.005G125300 Gossypium raimondii HOM05D000135 ORTHO05D005042 2.2e-07 59.3 63 39.7
Os07g0681400 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D005042 2.9e-07 58.9 72 43.1
Zm00001eb015800 Zea mays HOM05D000135 ORTHO05D005042 3.7e-07 58.5 67 44.8
CAN.G160.60 Capsicum annuum HOM05D024055 ORTHO05D115099 4.9e-07 58.2 31 83.9
Os03g0331700 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D005042 4.9e-07 58.2 67 46.3
BcaC06g34552 Brassica carinata HOM05D000135 ORTHO05D005042 6.4e-07 57.8 53 49.1
Lalb_Chr13g0290331 Lupinus albus HOM05D000135 ORTHO05D005042 6.4e-07 57.8 54 48.1
CAN.G301.4 Capsicum annuum HOM05D024055 ORTHO05D115571 8.3e-07 57.4 29 93.1
CAN.G403.7 Capsicum annuum HOM05D000053 ORTHO05D000035 8.3e-07 57.4 29 89.7
AUR62006461 Chenopodium quinoa HOM05D000135 ORTHO05D005042 8.3e-07 57.4 69 44.9
AUR62029817 Chenopodium quinoa HOM05D000135 ORTHO05D005042 1.1e-06 57.0 71 43.7
MD07G1157000 Malus domestica HOM05D000135 ORTHO05D005042 1.1e-06 57.0 58 44.8
CAN.G1705.3 Capsicum annuum HOM05D002808 ORTHO05D003135 1.4e-06 56.6 31 83.9
ATR1127G073 Amborella trichopoda HOM05D000135 ORTHO05D005042 1.9e-06 56.2 63 44.4
CAN.G148.2 Capsicum annuum HOM05D003623 ORTHO05D004335 1.9e-06 56.2 31 87.1
Solyc10g074740.2 Solanum lycopersicum HOM05D000135 ORTHO05D005042 2.4e-06 55.8 30 86.7
PGR031G0072 Punica granatum HOM05D000135 ORTHO05D005042 3.2e-06 55.5 67 40.3
Zm00001eb395260 Zea mays HOM05D000135 ORTHO05D005042 3.2e-06 55.5 67 41.8
Eucgr.A00852 Eucalyptus grandis HOM05D000135 ORTHO05D005042 9.2e-06 53.9 65 41.5


User provided reference genes

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