Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.3e-63 246.1 116 100.0
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 5.5e-54 214.2 116 89.7
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.6e-50 202.6 109 85.3
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 8.2e-50 200.3 109 84.4
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 5.3e-49 197.6 116 83.6
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 6.9e-49 197.2 109 83.5
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.5e-43 179.5 104 80.8
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.3e-43 177.9 102 81.4
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.1e-38 163.3 103 72.8
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 9.1e-33 143.7 110 60.9
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.3e-31 139.8 108 54.6
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.9e-30 136.0 110 56.4
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.5e-27 126.3 121 52.9
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.6e-27 125.6 121 52.1
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.6e-27 125.6 112 57.1
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 3.3e-27 125.2 115 56.5
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 4.4e-27 124.8 115 53.9
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 7.4e-27 124.0 110 53.6
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.3e-26 123.2 114 52.6
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.3e-26 123.2 120 54.2
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 1.3e-26 123.2 114 52.6
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.3e-26 123.2 121 52.1
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.2e-26 122.5 114 51.8
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.8e-26 122.1 114 53.5
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 3.7e-26 121.7 115 53.9
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.7e-26 121.7 114 54.4
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 8.2e-26 120.6 114 53.5
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.8e-25 119.4 111 53.2
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.8e-25 119.4 114 55.3
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 2.4e-25 119.0 110 52.7
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 2.4e-25 119.0 110 54.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 4.1e-25 118.2 121 52.1
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 5.3e-25 117.9 114 53.5
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 7.0e-25 117.5 117 49.6
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 9.1e-25 117.1 116 54.3
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 9.1e-25 117.1 114 50.9
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 9.1e-25 117.1 110 51.8
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.2e-24 116.7 110 55.5
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.6e-24 116.3 115 51.3
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.0e-24 115.9 110 45.5
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 2.0e-24 115.9 121 51.2
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.6e-24 115.5 110 45.5
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 2.6e-24 115.5 114 51.8
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 3.5e-24 115.2 111 54.1
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 3.5e-24 115.2 111 52.3
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.5e-24 114.8 115 53.0
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 4.5e-24 114.8 114 50.9
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.5e-24 114.8 114 51.8
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 4.5e-24 114.8 114 51.8
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 4.5e-24 114.8 111 53.2
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 5.9e-24 114.4 110 44.5
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 5.9e-24 114.4 114 50.0
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.9e-24 114.4 114 51.8
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 5.9e-24 114.4 114 50.0
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 5.9e-24 114.4 121 50.4
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.3e-23 113.2 114 50.0
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.3e-23 113.2 115 45.2
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.7e-23 112.8 120 48.3
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 3.8e-23 111.7 107 51.4
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.0e-23 111.3 116 50.9
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.5e-23 110.9 114 50.0
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 6.5e-23 110.9 114 50.0
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 8.5e-23 110.5 110 43.6
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.1e-22 110.2 114 51.8
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.5e-22 109.8 115 47.0
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.5e-22 109.8 110 42.7
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.5e-22 109.8 110 42.7
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.9e-22 109.4 114 51.8
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.9e-22 109.4 117 46.2
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.9e-22 109.4 114 49.1
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.9e-22 109.4 110 41.8
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.2e-22 108.6 112 50.9
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 3.2e-22 108.6 114 50.0
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 7.2e-22 107.5 110 42.7
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 7.2e-22 107.5 111 43.2
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 9.4e-22 107.1 110 42.7
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 9.4e-22 107.1 114 50.0
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 1.2e-21 106.7 110 41.8
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 1.6e-21 106.3 110 42.7
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.6e-21 106.3 110 41.8
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.6e-21 106.3 109 44.0
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 3.6e-21 105.1 110 41.8
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.4e-20 103.2 115 46.1
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.4e-20 103.2 114 44.7
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 3.0e-20 102.1 112 42.9
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 5.2e-20 101.3 111 40.5
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.2e-20 101.3 121 47.1
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 5.2e-20 101.3 117 47.9
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.8e-20 100.5 112 47.3
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.5e-19 99.8 112 46.4
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.5e-19 99.8 113 45.1
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 2.6e-19 99.0 100 49.0
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.6e-19 99.0 114 43.0
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.3e-18 96.7 110 40.0
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-18 96.7 115 46.1
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.2e-18 95.9 116 47.4
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 2.8e-18 95.5 114 48.2
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.8e-18 94.7 116 47.4
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.1e-17 93.6 110 39.1
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.1e-17 93.6 110 39.1
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 5.3e-17 91.3 117 45.3
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 1.2e-16 90.1 115 45.2
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 5.0e-15 84.7 113 38.1
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-14 83.6 88 50.0
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 7.2e-14 80.9 114 43.9
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.0e-13 77.4 138 37.0
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.4e-12 76.6 106 41.5
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 4.0e-12 75.1 132 34.1
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 8.8e-12 73.9 108 38.0
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.5e-11 73.2 112 37.5
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.6e-11 72.4 143 30.8
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.6e-11 72.4 129 34.9
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.7e-11 71.2 131 34.4
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 9.8e-11 70.5 131 33.6
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 2.2e-10 69.3 120 35.0
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 2.2e-10 69.3 120 35.8
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.8e-10 68.9 110 37.3
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 3.7e-10 68.6 113 38.9
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.7e-10 68.6 104 39.4
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 6.3e-10 67.8 120 34.2
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.3e-10 67.4 116 40.5
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.3e-10 67.4 116 40.5
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-09 67.0 63 47.6
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.4e-09 66.6 90 42.2
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 2.4e-09 65.9 131 30.5
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.0e-09 64.3 111 36.0
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 9.1e-09 63.9 159 30.2
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 9.1e-09 63.9 117 29.9
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 9.1e-09 63.9 137 29.9
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 2.0e-08 62.8 111 35.1
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 2.0e-08 62.8 115 30.4
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 3.5e-08 62.0 105 36.2
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.7e-07 59.7 100 40.0
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 2.3e-07 59.3 82 40.2
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 2.3e-07 59.3 128 28.9
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 5.0e-07 58.2 137 30.7
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 8.6e-07 57.4 149 27.5
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 8.6e-07 57.4 57 49.1
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.5e-06 55.8 113 35.4
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 7.2e-06 54.3 113 30.1


User provided reference genes

Program Settings