Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 1.7e-123 446.0 230 100.0
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 3.0e-120 435.3 230 98.3
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 1.6e-113 412.9 230 91.7
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 8.7e-112 407.1 230 90.4
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 4.3e-111 404.8 230 90.0
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 2.2e-110 402.5 230 89.6
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 2.4e-109 399.1 230 89.1
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 2.8e-102 375.6 232 82.8
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 6.9e-101 370.9 232 84.1
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 1.5e-100 369.8 231 84.0
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 1.0e-99 367.1 232 81.5
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 2.2e-99 365.9 231 82.3
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 2.9e-99 365.5 230 82.6
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 1.6e-97 359.8 233 80.7
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 1.4e-96 356.7 231 79.7
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 1.1e-95 353.6 230 78.7
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 2.6e-95 352.4 233 80.7
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 4.4e-95 351.7 233 79.8
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 4.8e-94 348.2 230 80.9
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 1.8e-93 346.3 229 80.3
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 3.1e-93 345.5 230 78.7
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 1.5e-92 343.2 231 78.4
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 2.6e-92 342.4 230 78.3
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 2.6e-92 342.4 230 78.3
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 5.9e-92 341.3 230 77.4
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 5.9e-92 341.3 232 78.4
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 5.9e-92 341.3 230 78.3
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 7.7e-92 340.9 230 78.3
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 1.0e-91 340.5 230 77.4
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 1.3e-91 340.1 230 77.8
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 2.2e-91 339.3 235 78.3
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 2.9e-91 339.0 232 78.4
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 5.0e-91 338.2 231 77.9
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 6.5e-91 337.8 230 76.5
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 6.5e-91 337.8 230 76.5
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 6.5e-91 337.8 225 80.9
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 8.5e-91 337.4 230 76.5
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 1.1e-90 337.0 230 78.7
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 1.1e-90 337.0 231 78.8
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 1.1e-90 337.0 233 76.8
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 1.1e-90 337.0 231 77.9
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 1.1e-90 337.0 234 76.9
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 1.4e-90 336.7 236 75.8
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 2.5e-90 335.9 230 76.1
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 3.2e-90 335.5 230 79.6
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 5.5e-90 334.7 230 78.3
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 7.2e-90 334.3 233 77.7
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 9.4e-90 334.0 230 77.8
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 9.4e-90 334.0 230 76.5
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 9.4e-90 334.0 230 77.0
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 1.2e-89 333.6 230 77.0
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.2e-89 333.6 230 77.8
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 1.6e-89 333.2 231 76.2
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 2.1e-89 332.8 230 77.0
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 2.1e-89 332.8 230 76.5
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.7e-89 332.4 230 76.5
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 6.1e-89 331.3 230 76.1
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 6.1e-89 331.3 232 78.0
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 8.0e-89 330.9 231 78.4
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 1.0e-88 330.5 230 77.8
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.4e-88 330.1 230 75.7
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.4e-88 330.1 230 75.7
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 2.3e-88 329.3 234 75.2
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 3.0e-88 328.9 231 74.9
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 6.7e-88 327.8 231 78.4
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 8.8e-88 327.4 233 76.4
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 8.8e-88 327.4 235 75.7
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.6e-87 325.9 226 77.0
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 4.4e-87 325.1 230 74.8
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 4.4e-87 325.1 237 75.5
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 4.4e-87 325.1 233 76.8
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 1.3e-86 323.6 230 75.7
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.3e-86 323.6 236 73.3
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 1.7e-86 323.2 180 88.9
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 2.2e-86 322.8 234 74.8
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 4.8e-86 321.6 237 74.7
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 8.2e-86 320.9 226 74.8
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 1.4e-85 320.1 234 72.6
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 1.8e-85 319.7 233 73.8
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 1.8e-85 319.7 231 74.0
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 2.4e-85 319.3 230 75.2
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 2.4e-85 319.3 237 74.3
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.4e-85 319.3 228 75.0
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 3.1e-85 318.9 230 74.3
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 3.1e-85 318.9 230 73.9
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 5.3e-85 318.2 226 74.3
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 5.3e-85 318.2 231 74.0
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 7.0e-85 317.8 230 73.5
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 1.6e-84 316.6 230 73.0
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 1.6e-84 316.6 230 73.0
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 1.6e-84 316.6 230 72.2
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.0e-84 316.2 226 74.3
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 2.0e-84 316.2 226 73.5
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 3.5e-84 315.5 230 73.0
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 3.5e-84 315.5 230 72.6
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 3.5e-84 315.5 230 73.0
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 3.5e-84 315.5 230 73.0
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 3.5e-84 315.5 230 72.6
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 3.5e-84 315.5 232 72.8
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 3.5e-84 315.5 230 73.0
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 1.0e-83 313.9 230 72.6
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.3e-83 313.5 230 74.3
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 1.7e-83 313.2 230 72.6
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 2.2e-83 312.8 230 73.0
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 2.2e-83 312.8 230 73.0
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 2.2e-83 312.8 231 72.7
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 5.0e-83 311.6 230 71.7
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 6.5e-83 311.2 232 72.0
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 2.5e-82 309.3 220 77.7
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 7.2e-82 307.8 226 73.0
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 9.4e-82 307.4 179 84.4
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 6.1e-81 304.7 230 70.9
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 9.7e-79 297.4 230 69.6
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 9.7e-79 297.4 230 69.6
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 1.4e-77 293.5 181 79.0
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 1.4e-77 293.5 220 70.0
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 3.1e-77 292.4 156 90.4
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 5.3e-77 291.6 235 67.7
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 5.9e-76 288.1 231 68.8
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 2.9e-75 285.8 205 76.1
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 5.0e-75 285.0 215 70.2
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.9e-74 283.1 228 68.4
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 3.0e-72 275.8 221 67.0
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 5.2e-64 248.4 229 59.0
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.0e-63 246.5 233 57.5
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 3.4e-63 245.7 174 67.8
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 4.4e-63 245.4 240 56.7
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.7e-62 243.4 228 56.6
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 2.8e-62 242.7 235 57.4
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 3.3e-58 229.2 228 56.1
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 8.9e-56 221.1 222 54.5
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.2e-52 210.7 144 80.6
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 5.8e-47 191.8 213 51.6
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 1.3e-43 180.6 224 45.5
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 8.6e-43 177.9 127 84.3
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.2e-39 167.5 152 65.1
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.6e-39 166.4 134 74.6
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 2.1e-36 156.8 173 50.3
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 1.7e-30 137.1 77 74.0
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 4.6e-28 129.0 110 71.8
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 8.4e-22 108.2 141 50.4
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 3.2e-21 106.3 57 82.5
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 7.4e-10 68.6 44 79.5


User provided reference genes

Program Settings