Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G674.44 Capsicum annuum HOM05D002984 ORTHO05D003561 7.4e-309 1063.1 579 100.0
Nitab4.5_0005194g0020 Nicotiana tabacum HOM05D002984 ORTHO05D003561 1.9e-118 430.6 491 55.6
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 6.8e-105 385.6 491 49.3
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 5.4e-102 375.9 463 51.4
Dinv21122 Davidia involucrata HOM05D002984 ORTHO05D003561 5.4e-94 349.4 506 46.4
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 2.6e-88 330.5 478 48.7
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 5.8e-88 329.3 506 44.7
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 7.6e-88 328.9 482 45.6
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 6.4e-87 325.9 491 44.8
Nitab4.5_0000489g0040 Nicotiana tabacum HOM05D002984 ORTHO05D003561 1.4e-86 324.7 443 47.4
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 3.5e-85 320.1 506 43.5
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 1.0e-84 318.5 548 41.8
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 1.3e-84 318.2 505 42.2
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 2.3e-84 317.4 505 42.2
COL.COLO4_07881 Corchorus olitorius HOM05D002984 ORTHO05D003561 3.9e-84 316.6 505 42.6
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 3.9e-84 316.6 462 45.9
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.5e-83 314.7 505 41.6
Peaxi162Scf00004g01518 Petunia axillaris HOM05D002984 ORTHO05D003561 1.9e-83 314.3 579 39.7
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 2.5e-83 313.9 505 43.4
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 3.3e-83 313.5 505 42.2
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 7.4e-83 312.4 505 43.8
TAR622G0040 Trochodendron aralioides HOM05D002984 ORTHO05D003561 6.2e-82 309.3 583 40.8
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 6.9e-81 305.8 510 41.8
CSS0018296 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 2.6e-80 303.9 478 48.7
Nitab4.5_0000597g0030 Nicotiana tabacum HOM05D002984 ORTHO05D003561 4.5e-80 303.1 479 44.1
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 1.0e-79 302.0 536 41.2
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 3.8e-79 300.1 465 44.3
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 4.9e-79 299.7 503 41.6
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 8.4e-79 298.9 503 41.6
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 3.2e-78 297.0 474 47.9
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 5.5e-78 296.2 582 39.9
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 1.6e-77 294.7 506 41.9
Gohir.A13G053428 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.6e-77 294.7 578 38.9
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 3.5e-77 293.5 506 41.7
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 6.0e-77 292.7 506 42.5
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 3.0e-76 290.4 479 42.4
Actinidia14860 Actinidia chinensis HOM05D002984 ORTHO05D003561 8.7e-76 288.9 506 41.9
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 1.1e-75 288.5 511 41.1
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 2.5e-75 287.3 506 42.1
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 2.5e-75 287.3 543 39.8
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 2.5e-75 287.3 469 43.7
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 2.1e-74 284.3 476 42.6
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 2.8e-74 283.9 509 40.7
Eucgr.D01061 Eucalyptus grandis HOM05D002984 ORTHO05D003561 9.0e-73 278.9 510 41.2
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 9.0e-73 278.9 563 39.3
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 1.5e-72 278.1 505 41.0
MBI01_g09372_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 1.5e-72 278.1 481 41.0
PGSC0003DMG401000817 Solanum tuberosum HOM05D002984 ORTHO05D003561 1.5e-72 278.1 204 76.0
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 1.5e-72 278.1 505 40.6
Rhsim09G0111200 Rhododendron simsii HOM05D002984 ORTHO05D000550 3.4e-72 276.9 484 42.8
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 5.9e-72 276.2 462 43.5
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 1.3e-71 275.0 512 40.4
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 1.3e-71 275.0 476 42.6
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 2.9e-71 273.9 512 40.2
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 2.9e-71 273.9 617 37.1
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 3.8e-71 273.5 462 42.9
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 3.2e-70 270.4 582 38.8
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 5.5e-70 269.6 515 39.4
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 5.5e-70 269.6 508 40.7
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 1.2e-69 268.5 491 40.5
vmacro10537 Vaccinium macrocarpon HOM05D002984 ORTHO05D003561 3.6e-69 266.9 303 53.8
Oeu010774.1 Olea europaea HOM05D002984 ORTHO05D003561 1.0e-68 265.4 658 34.5
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 2.5e-67 260.8 478 41.4
QL01p044747 Quercus lobata HOM05D002984 ORTHO05D003561 9.7e-67 258.8 573 36.1
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 1.6e-66 258.1 529 42.2
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 1.4e-65 255.0 480 41.0
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 5.3e-65 253.1 490 40.0
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 6.9e-65 252.7 520 37.5
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 6.9e-65 252.7 468 40.4
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 6.9e-65 252.7 477 42.1
Lj2g0022832 Lotus japonicus HOM05D002984 ORTHO05D003561 2.0e-64 251.1 542 37.6
Sabra02G0035000 Salix brachista HOM05D002984 ORTHO05D003561 1.0e-63 248.8 620 35.6
Lj6C764G13 Lonicera japonica HOM05D002984 ORTHO05D003561 1.3e-63 248.4 465 41.3
Psat2g101040 Pisum sativum HOM05D002984 ORTHO05D003561 1.7e-63 248.1 480 41.9
AUR62002298 Chenopodium quinoa HOM05D002984 ORTHO05D003561 2.2e-63 247.7 490 39.4
SGA_v2.0_scaffold124G33581 Striga asiatica HOM05D002984 ORTHO05D003561 2.2e-63 247.7 464 41.2
AUR62015392 Chenopodium quinoa HOM05D002984 ORTHO05D003561 8.5e-63 245.7 491 39.3
Lj2g0024103 Lotus japonicus HOM05D002984 ORTHO05D003561 4.2e-62 243.4 517 38.3
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 5.5e-62 243.0 467 39.2
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 7.2e-62 242.7 470 45.3
Sc25g0002400 Simmondsia chinensis HOM05D002984 ORTHO05D003561 9.4e-62 242.3 532 37.6
ClCG05G022960 Citrullus lanatus HOM05D002984 ORTHO05D000550 1.6e-61 241.5 474 39.7
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 2.1e-61 241.1 466 40.8
EL10Ac3g05929 Beta vulgaris HOM05D002984 ORTHO05D003561 3.6e-61 240.4 491 39.9
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 3.6e-61 240.4 470 45.1
Glyma.01G086201 Glycine max HOM05D002984 ORTHO05D003561 2.3e-60 237.7 480 38.1
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 5.1e-60 236.5 461 40.6
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 5.7e-59 233.0 474 39.2
C05p24920 Brassica napus HOM05D002984 ORTHO05D003561 4.8e-58 229.9 550 35.6
Lj6A762T42 Lonicera japonica HOM05D002984 ORTHO05D003561 4.8e-58 229.9 460 40.9
A09p39560 Brassica napus HOM05D002984 ORTHO05D003561 9.1e-57 225.7 541 35.1
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 9.1e-57 225.7 541 35.1
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 2.6e-56 224.2 431 40.6
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 4.5e-56 223.4 481 38.5
Ah.13g072880 Amaranthus hybridus HOM05D002984 ORTHO05D003561 1.0e-55 222.2 491 38.3
FAN12G2547 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.7e-55 221.5 288 50.3
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 6.5e-55 219.5 466 37.3
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 8.5e-55 219.2 432 39.8
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 2.1e-53 214.5 459 37.3
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 3.6e-53 213.8 466 37.3
SHI14503 Sapria himalayana HOM05D002984 ORTHO05D003561 7.9e-53 212.6 476 37.0
Sopen05g005530 Solanum pennellii HOM05D002984 ORTHO05D003561 7.9e-53 212.6 176 68.2
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 1.0e-52 212.2 469 35.8
Oeu041887.1 Olea europaea HOM05D002984 ORTHO05D003561 1.8e-52 211.5 236 54.7
BcaC05g26443 Brassica carinata HOM05D002984 ORTHO05D003561 2.3e-52 211.1 478 36.2
BolC5t31221H Brassica oleracea HOM05D002984 ORTHO05D003561 2.3e-52 211.1 478 36.2
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 3.9e-52 210.3 577 34.0
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 2.0e-51 208.0 434 36.4
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 2.6e-51 207.6 434 36.6
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 2.6e-51 207.6 464 36.4
BolC3t19582H Brassica oleracea HOM05D002984 ORTHO05D003561 3.3e-51 207.2 436 36.7
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 5.7e-51 206.5 461 36.4
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 5.7e-51 206.5 331 43.2
BraA08t34651Z Brassica rapa HOM05D002984 ORTHO05D003561 2.8e-50 204.1 434 35.9
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 3.7e-50 203.8 462 35.5
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 4.8e-50 203.4 454 35.7
Aa31LG7G8960 Aethionema arabicum HOM05D002984 ORTHO05D003561 8.2e-50 202.6 511 34.4
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 1.8e-49 201.4 502 36.7
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 2.6e-48 197.6 445 35.5
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 3.5e-48 197.2 473 34.7
Solyc05g009710.4 Solanum lycopersicum HOM05D002984 ORTHO05D003561 7.7e-48 196.1 217 56.2
MBI01_g32855_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 1.5e-46 191.8 175 57.1
Hund03157 Selenicereus undatus HOM05D002984 ORTHO05D003561 1.6e-45 188.3 489 36.6
FAN13G2905 Fragaria x ananassa HOM05D002984 ORTHO05D003561 8.0e-45 186.0 198 55.6
CDE08G0495 Ceratophyllum demersum HOM05D002984 ORTHO05D003561 3.0e-44 184.1 447 35.6
HanXRQChr17g0552241 Helianthus annuus HOM05D002984 ORTHO05D003561 4.0e-44 183.7 314 41.4
FvH4_6g01630 Fragaria vesca HOM05D002984 ORTHO05D003561 8.8e-44 182.6 221 51.6
SGA_v2.0_scaffold14G06838 Striga asiatica HOM05D002984 ORTHO05D003561 1.2e-43 182.2 219 49.8
Lsat_1_v5_gn_3_60001 Lactuca sativa HOM05D002984 ORTHO05D003561 3.3e-43 180.6 235 49.8
Nitab4.5_0000672g0090 Nicotiana tabacum HOM05D002984 ORTHO05D003561 5.7e-43 179.9 358 40.5
FvH4_5g05460 Fragaria vesca HOM05D002984 ORTHO05D003561 1.1e-41 175.6 228 48.7
Glyma.01G086600 Glycine max HOM05D002984 ORTHO05D003561 7.0e-41 172.9 153 60.8
Glyma.02G098500 Glycine max HOM05D002984 ORTHO05D003561 1.0e-39 169.1 156 58.3
Nitab4.5_0000672g0110 Nicotiana tabacum HOM05D002984 ORTHO05D003561 1.5e-38 165.2 122 73.0
SEGI_39328 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 4.2e-38 163.7 495 30.9
FAN18G2442 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.2e-37 162.2 232 47.8
Lsat_1_v5_gn_4_19021 Lactuca sativa HOM05D002984 ORTHO05D003561 2.7e-37 161.0 179 52.5
Medtr1g013000 Medicago truncatula HOM05D002984 ORTHO05D003561 2.7e-37 161.0 207 52.2
FAN18G3612 Fragaria x ananassa HOM05D002984 ORTHO05D003561 4.7e-37 160.2 232 47.4
BcaC05g26654 Brassica carinata HOM05D002984 ORTHO05D003561 1.6e-32 145.2 473 31.3
FAN03G1604 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.7e-31 141.7 154 53.2
Dinv40427 Davidia involucrata HOM05D002984 ORTHO05D003561 8.5e-31 139.4 220 43.2
ECA246G2084 Erigeron canadensis HOM05D002984 ORTHO05D003561 5.5e-30 136.7 258 40.3
Pp3c25_2660 Physcomitrium patens HOM05D002984 ORTHO05D003561 4.7e-29 133.7 240 43.3
Pp3c25_2430 Physcomitrium patens HOM05D002984 ORTHO05D003561 1.0e-28 132.5 156 53.8
QL10p023599 Quercus lobata HOM05D002984 ORTHO05D003561 1.0e-28 132.5 281 36.3
SMO118G0238 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 5.2e-28 130.2 330 35.2
SMO356G0715 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 8.8e-28 129.4 260 39.6
Mapoly0022s0114 Marchantia polymorpha HOM05D002984 ORTHO05D003561 1.2e-24 119.0 453 28.0
ECA246G1507 Erigeron canadensis HOM05D002984 ORTHO05D003561 2.0e-24 118.2 164 41.5
FAN13G1615 Fragaria x ananassa HOM05D002984 ORTHO05D003561 4.5e-24 117.1 178 44.9
Hund25094 Selenicereus undatus HOM05D002984 ORTHO05D003561 5.9e-24 116.7 151 49.7
GSVIVG01008248001 Vitis vinifera HOM05D002984 ORTHO05D003561 7.8e-24 116.3 121 52.9
FAN18G2176 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.3e-23 115.5 182 42.9
FvH4_5g12610 Fragaria vesca HOM05D002984 ORTHO05D003561 1.7e-23 115.2 182 42.9
FAN04G1620 Fragaria x ananassa HOM05D002984 ORTHO05D003561 8.6e-23 112.8 182 42.3
FAN18G0496 Fragaria x ananassa HOM05D002984 ORTHO05D003561 4.3e-22 110.5 184 42.4
FAN10G3298 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.6e-21 108.6 216 37.0
Sc04g0003680 Simmondsia chinensis HOM05D002984 ORTHO05D003561 3.0e-20 104.4 195 35.9
HanXRQChr17g0552251 Helianthus annuus HOM05D002984 ORTHO05D003561 3.4e-19 100.9 137 46.0
RcHm_v2.0_Chr7g0184721 Rosa chinensis HOM05D002984 ORTHO05D003561 2.4e-17 94.7 128 48.4
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 5.4e-17 93.6 83 62.7
CAN.G2.30 Capsicum annuum HOM05D002984 ORTHO05D003561 7.0e-17 93.2 77 62.3
Cpa.g.sc13.36 Carica papaya HOM05D002984 ORTHO05D003561 3.0e-15 87.8 125 42.4
Phvul.004G160600 Phaseolus vulgaris HOM05D002984 ORTHO05D014229 3.0e-15 87.8 177 35.6
Glyma.20G031800 Glycine max HOM05D002984 ORTHO05D014229 8.6e-15 86.3 169 33.7
Medtr6g085080 Medicago truncatula HOM05D002984 ORTHO05D022868 8.9e-12 76.3 167 34.1
Medtr6g085100 Medicago truncatula HOM05D002984 ORTHO05D022868 1.5e-11 75.5 167 34.1
Lalb_Chr14g0371321 Lupinus albus HOM05D002984 ORTHO05D003561 2.0e-11 75.1 176 30.7
TPR.G31455 Trifolium pratense HOM05D002984 ORTHO05D022868 4.4e-11 73.9 226 30.1
Lj2g0016414 Lotus japonicus HOM05D002984 ORTHO05D022868 5.8e-11 73.6 197 31.0
Psat1g039440 Pisum sativum HOM05D002984 ORTHO05D022868 5.8e-11 73.6 196 29.6
SMO340G0161 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 1.7e-10 72.0 98 44.9
VMungo0464G0094 Vigna mungo HOM05D002984 ORTHO05D014229 3.7e-10 70.9 154 33.8
Actinidia39817 Actinidia chinensis HOM05D002984 ORTHO05D003561 7.0e-09 66.6 225 30.2
Phvul.004G160500 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 1.0e-07 62.8 338 26.0
TPR.G38270 Trifolium pratense HOM05D002984 ORTHO05D003561 2.3e-07 61.6 221 31.7
CBR_g38147 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-07 61.2 235 30.2
BcaB03g12090 Brassica carinata HOM05D002984 ORTHO05D003561 5.0e-07 60.5 78 44.9
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 8.6e-07 59.7 171 29.8
VMungo0464G1061 Vigna mungo HOM05D002984 ORTHO05D003561 1.5e-06 58.9 213 28.6
arahy.Tifrunner.gnm1.ann1.48S2GI Arachis hypogaea HOM05D002984 ORTHO05D003561 1.9e-06 58.5 147 29.9
Peaxi162Scf00004g01519 Petunia axillaris HOM05D002984 ORTHO05D003561 5.6e-06 57.0 30 86.7
ECA238G1450 Erigeron canadensis HOM05D000218 ORTHO05D000125 9.5e-06 56.2 70 44.3


User provided reference genes

Program Settings