Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 0.0e+00 1289.6 669 100.0
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 0.0e+00 1191.0 672 92.4
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 0.0e+00 1185.2 672 92.0
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 0.0e+00 1118.2 663 87.5
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.5e-305 1052.4 663 84.3
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 8.6e-285 983.4 679 75.0
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 9.8e-281 969.9 871 63.5
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 2.0e-278 962.2 658 75.1
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 6.0e-278 960.7 658 75.4
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 1.9e-276 955.7 674 74.0
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.4e-274 949.5 663 74.4
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 1.8e-274 949.1 666 74.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.0e-273 945.7 680 72.6
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 1.7e-272 942.6 673 71.8
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.2e-270 936.4 661 72.0
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 2.1e-270 935.6 660 73.8
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 3.5e-270 934.9 663 72.9
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 5.1e-269 931.0 656 73.2
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 8.6e-269 930.2 652 73.9
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 2.5e-268 928.7 660 72.0
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 1.6e-267 926.0 673 71.2
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.1e-267 925.6 660 72.3
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 3.6e-267 924.9 658 73.4
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.2e-265 919.8 672 71.6
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 2.0e-265 919.1 652 72.2
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.7e-264 916.0 672 69.9
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 8.4e-264 913.7 656 72.6
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 4.1e-263 911.4 662 71.0
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 2.1e-262 909.1 669 71.2
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 2.7e-262 908.7 666 70.4
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 3.5e-262 908.3 672 69.3
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 4.6e-262 907.9 674 69.3
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 6.0e-262 907.5 658 72.0
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.0e-261 906.7 658 72.5
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 3.0e-261 905.2 660 71.2
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 5.1e-261 904.4 656 70.6
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 6.6e-261 904.0 658 70.5
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 8.6e-261 903.7 675 68.9
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 8.6e-261 903.7 674 70.3
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 1.1e-260 903.3 673 69.5
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 4.3e-260 901.4 667 70.8
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 5.6e-260 901.0 672 69.0
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 9.6e-260 900.2 658 70.5
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.1e-258 896.7 652 71.3
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.8e-258 896.0 662 70.7
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 4.0e-258 894.8 675 68.4
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.2e-257 893.3 672 69.2
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.2e-257 893.3 653 69.7
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.5e-257 892.9 654 69.9
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.7e-256 889.4 691 67.6
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 8.4e-256 887.1 654 69.3
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 5.4e-255 884.4 654 69.9
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 2.7e-254 882.1 664 69.0
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.0e-253 880.2 660 70.0
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.7e-253 879.4 654 68.3
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 3.9e-253 878.2 657 68.9
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 3.9e-253 878.2 654 69.0
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 4.3e-252 874.8 675 67.3
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 4.3e-252 874.8 657 68.8
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 7.3e-252 874.0 662 68.7
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.8e-251 872.1 660 68.9
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 4.0e-250 868.2 671 68.1
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.7e-248 862.8 657 68.0
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 2.9e-248 862.1 659 68.3
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 8.4e-248 860.5 692 66.2
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.4e-247 859.0 692 66.0
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 2.7e-246 855.5 654 67.0
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 1.3e-243 846.7 648 67.6
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 3.6e-243 845.1 663 68.0
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.0e-241 839.3 661 66.4
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.4e-239 833.2 658 65.5
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.4e-239 833.2 663 65.5
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.2e-239 831.6 664 65.7
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 5.5e-239 831.2 658 66.4
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 5.1e-237 824.7 689 63.9
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.9e-236 822.8 609 70.1
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 4.3e-236 821.6 594 72.1
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 2.4e-234 815.8 660 64.2
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 2.4e-234 815.8 603 70.1
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 2.3e-229 799.3 679 63.9
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 1.6e-227 793.1 727 60.4
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 3.4e-225 785.4 619 67.9
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 4.5e-225 785.0 597 68.8
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 7.9e-222 774.2 691 59.5
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.0e-221 773.9 597 68.0
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 9.1e-218 760.8 672 60.0
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.5e-212 743.4 654 61.3
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.4e-210 736.1 683 59.4
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.3e-203 713.8 657 58.3
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.3e-194 681.8 498 71.7
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 8.3e-187 657.9 664 54.2
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 3.5e-185 652.5 849 47.2
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 2.1e-182 643.3 507 65.7
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 7.5e-180 634.8 561 60.6
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.0e-176 624.4 476 69.3
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 4.3e-167 592.4 564 56.0
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.2e-158 564.3 492 62.2
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.0e-157 559.3 608 53.1
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.6e-142 510.8 437 60.9
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 2.4e-133 480.3 441 59.9
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 8.2e-118 428.7 471 50.7
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.6e-105 386.3 346 59.0
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.7e-79 299.7 411 44.0
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 5.3e-77 293.1 202 75.2
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 9.1e-77 292.4 206 73.8
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.6e-76 291.6 435 41.8
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.9e-74 284.6 232 60.3
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.5e-68 263.5 164 77.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.2e-66 256.9 381 43.6
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.8e-62 244.2 171 69.0
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 3.8e-59 233.8 284 50.0
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.8e-56 224.9 249 55.0
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.8e-48 198.4 142 70.4
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-41 174.5 427 30.0
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 1.5e-39 168.7 170 58.8
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 1.7e-38 165.2 145 60.7
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 3.2e-37 161.0 97 80.4
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 3.0e-35 154.5 95 80.0
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.6e-33 148.7 93 76.3
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 2.1e-33 148.3 148 56.8
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 1.5e-31 142.1 90 74.4
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 2.2e-30 138.3 79 84.8
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.2e-30 138.3 112 63.4
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 3.8e-30 137.5 93 69.9
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 6.4e-30 136.7 101 65.3
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 2.7e-28 131.3 420 31.2
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.9e-26 125.2 204 38.2
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 8.1e-25 119.8 83 72.3
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 4.4e-23 114.0 238 37.0
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.9e-21 108.6 96 61.5
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 2.4e-21 108.2 158 43.0
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 3.0e-19 101.3 90 61.1
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.3e-18 97.8 174 35.6
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 7.3e-18 96.7 65 70.8
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.4e-16 92.4 67 70.1
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 5.3e-16 90.5 70 64.3
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 1.9e-13 82.0 50 76.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 1.9e-13 82.0 50 76.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-13 80.5 58 65.5
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.3e-11 75.9 50 70.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 3.9e-11 74.3 71 57.7
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 4.0e-08 64.3 89 46.1
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 6.9e-08 63.5 62 46.8


User provided reference genes

Program Settings