Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G65.230 Capsicum annuum HOM05D003633 ORTHO05D004245 7.2e-65 250.4 122 100.0
CAN.G2071.2 Capsicum annuum HOM05D000894 ORTHO05D004245 1.0e-42 176.8 85 100.0
Solyc06g073780.4 Solanum lycopersicum HOM05D003633 ORTHO05D004245 2.3e-42 175.6 87 96.6
Sopen06g030180 Solanum pennellii HOM05D003633 ORTHO05D004245 3.0e-42 175.3 87 95.4
Nitab4.5_0003359g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 2.5e-41 172.2 87 93.1
Peaxi162Scf00355g00113 Petunia axillaris HOM05D003633 ORTHO05D004245 2.5e-41 172.2 86 95.3
Cc01_g08340 Coffea canephora HOM05D003633 ORTHO05D004245 2.8e-40 168.7 87 90.8
SalBow3G2138 Salvia bowleyana HOM05D003633 ORTHO05D004245 3.6e-40 168.3 87 89.7
ECA238G1454 Erigeron canadensis HOM05D003633 ORTHO05D004245 4.7e-40 167.9 87 90.8
HanXRQChr06g0181541 Helianthus annuus HOM05D003633 ORTHO05D004245 4.7e-40 167.9 87 90.8
SGA_v2.0_scaffold79G25491 Striga asiatica HOM05D003633 ORTHO05D004245 8.1e-40 167.2 87 88.5
Nitab4.5_0000200g0070 Nicotiana tabacum HOM05D003633 ORTHO05D004245 3.1e-39 165.2 86 90.7
Oeu058179.1 Olea europaea HOM05D003633 ORTHO05D004245 4.0e-39 164.9 87 89.7
Ca_06129_v3 Cicer arietinum L. HOM05D003633 ORTHO05D004245 8.9e-39 163.7 87 86.2
Haze_23622 Corylus avellana HOM05D003633 ORTHO05D004245 8.9e-39 163.7 87 85.1
Actinidia06352 Actinidia chinensis HOM05D003633 ORTHO05D004245 1.2e-38 163.3 87 88.5
Actinidia22465 Actinidia chinensis HOM05D003633 ORTHO05D004245 1.2e-38 163.3 87 88.5
Duzib170G1043 Durio zibethinus HOM05D003633 ORTHO05D004245 1.2e-38 163.3 87 87.4
PGR119G0283 Punica granatum HOM05D003633 ORTHO05D004245 1.5e-38 162.9 87 87.4
Atru.chr3.3038 Acer truncatum HOM05D003633 ORTHO05D004245 2.0e-38 162.5 87 86.2
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 2.0e-38 162.5 86 90.7
Migut.N02425 Erythranthe guttata HOM05D003633 ORTHO05D004245 2.0e-38 162.5 87 86.2
TPR.G13308 Trifolium pratense HOM05D003633 ORTHO05D004245 2.0e-38 162.5 87 85.1
Lsat_1_v5_gn_2_27520 Lactuca sativa HOM05D003633 ORTHO05D004245 2.6e-38 162.2 87 87.4
PSO017G3356 Papaver somniferum HOM05D003633 ORTHO05D004245 2.6e-38 162.2 87 83.9
PSO170G6842 Papaver somniferum HOM05D003633 ORTHO05D004245 2.6e-38 162.2 87 83.9
Pp3c24_13420 Physcomitrium patens HOM05D003633 ORTHO05D004245 2.6e-38 162.2 87 87.4
Hund18817 Selenicereus undatus HOM05D003633 ORTHO05D004245 2.6e-38 162.2 87 88.5
THA.LOC104800499 Tarenaya hassleriana HOM05D003633 ORTHO05D004245 2.6e-38 162.2 87 87.4
ATR0618G390 Amborella trichopoda HOM05D003633 ORTHO05D004245 3.4e-38 161.8 87 86.2
Nn2g11908 Nelumbo nucifera HOM05D003633 ORTHO05D004245 4.4e-38 161.4 87 86.2
Sc12g0000470 Simmondsia chinensis HOM05D003633 ORTHO05D004245 4.4e-38 161.4 87 88.5
TWI75G0107 Tripterygium wilfordii HOM05D003633 ORTHO05D004245 4.4e-38 161.4 87 86.2
HPP92_021489 Vanilla planifolia HOM05D003633 ORTHO05D004245 4.4e-38 161.4 87 85.1
HPP92_021530 Vanilla planifolia HOM05D003633 ORTHO05D004245 4.4e-38 161.4 87 85.1
AL4G20920 Arabidopsis lyrata HOM05D003633 ORTHO05D004245 5.8e-38 161.0 87 87.4
Gohir.A05G076900 Gossypium hirsutum HOM05D003633 ORTHO05D004245 5.8e-38 161.0 87 85.1
Gohir.D05G079700 Gossypium hirsutum HOM05D003633 ORTHO05D004245 5.8e-38 161.0 87 85.1
Sp4g09970 Schrenkiella parvula HOM05D003633 ORTHO05D004245 5.8e-38 161.0 86 88.4
LjContig00564g0017285 Lotus japonicus HOM05D003633 ORTHO05D004245 7.6e-38 160.6 87 83.9
Rhsim01G0197900 Rhododendron simsii HOM05D003633 ORTHO05D004245 7.6e-38 160.6 87 88.5
AagrBONN_evm.TU.Sc2ySwM_228.640 Anthoceros agrestis HOM05D003633 ORTHO05D004245 9.9e-38 160.2 87 86.2
Eucgr.J00601 Eucalyptus grandis HOM05D003633 ORTHO05D004245 9.9e-38 160.2 87 86.2
Thhalv10001887m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 9.9e-38 160.2 87 86.2
MD11G1177700 Malus domestica HOM05D003633 ORTHO05D004245 9.9e-38 160.2 87 86.2
Psat2g023680 Pisum sativum HOM05D003633 ORTHO05D004245 9.9e-38 160.2 87 83.9
Prupe.6G149900 Prunus persica HOM05D003633 ORTHO05D004245 9.9e-38 160.2 87 86.2
Sed0007253 Sechium edule HOM05D003633 ORTHO05D004245 9.9e-38 160.2 87 86.2
Aqoxy7G01992 Aquilegia oxysepala HOM05D003633 ORTHO05D004245 1.3e-37 159.8 87 85.1
CSS0028100 Camellia sinensis var. sinensis HOM05D003633 ORTHO05D004245 1.3e-37 159.8 87 87.4
FvH4_5g11061 Fragaria vesca HOM05D003633 ORTHO05D004245 1.3e-37 159.8 87 83.9
FAN04G2246 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.3e-37 159.8 87 83.9
FAN08G3150 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.3e-37 159.8 87 83.9
FAN13G1182 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.3e-37 159.8 87 83.9
FAN18G2517 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.3e-37 159.8 87 83.9
FAN18G4241 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.3e-37 159.8 87 83.9
RcHm_v2.0_Chr7g0186731 Rosa chinensis HOM05D003633 ORTHO05D004245 1.3e-37 159.8 87 83.9
CDE06G2316 Ceratophyllum demersum HOM05D003633 ORTHO05D004245 1.7e-37 159.5 87 85.1
Gorai.009G081300 Gossypium raimondii HOM05D003633 ORTHO05D004245 1.7e-37 159.5 86 84.9
MD03G1161700 Malus domestica HOM05D003633 ORTHO05D004245 1.7e-37 159.5 87 85.1
Ciclev10027700m.g Citrus clementina HOM05D003633 ORTHO05D004245 2.2e-37 159.1 87 83.9
MELO3C014687.2 Cucumis melo HOM05D003633 ORTHO05D004245 2.2e-37 159.1 87 83.9
CsaV3_4G023280 Cucumis sativus L. HOM05D003633 ORTHO05D004245 2.2e-37 159.1 87 83.9
Manes.06G005500 Manihot esculenta HOM05D003633 ORTHO05D004245 2.2e-37 159.1 87 85.1
arahy.Tifrunner.gnm1.ann1.65YTHF Arachis hypogaea HOM05D003633 ORTHO05D004245 2.9e-37 158.7 87 82.8
arahy.Tifrunner.gnm1.ann1.Z8K404 Arachis hypogaea HOM05D003633 ORTHO05D004245 2.9e-37 158.7 87 82.8
BcaC02g08276 Brassica carinata HOM05D003633 ORTHO05D004245 2.9e-37 158.7 86 87.2
BolC4t27174H Brassica oleracea HOM05D003633 ORTHO05D004245 2.9e-37 158.7 86 87.2
Carub.0004s0770 Capsella rubella HOM05D003633 ORTHO05D004245 2.9e-37 158.7 88 84.1
Dinv32833 Davidia involucrata HOM05D003633 ORTHO05D004245 2.9e-37 158.7 87 86.2
Migut.N02426 Erythranthe guttata HOM05D003633 ORTHO05D004245 2.9e-37 158.7 87 83.9
Medtr1g051825 Medicago truncatula HOM05D003633 ORTHO05D004245 2.9e-37 158.7 111 70.3
Thecc.09G266900 Theobroma cacao HOM05D003633 ORTHO05D004245 2.9e-37 158.7 87 83.9
VMungo1309G0720 Vigna mungo HOM05D003633 ORTHO05D004245 2.9e-37 158.7 87 83.9
AT2G27170 Arabidopsis thaliana HOM05D003633 ORTHO05D004245 3.7e-37 158.3 87 85.1
Glyma.02G271900 Glycine max HOM05D003633 ORTHO05D004245 3.7e-37 158.3 87 83.9
Glyma.14G044900 Glycine max HOM05D003633 ORTHO05D004245 3.7e-37 158.3 87 83.9
GSVIVG01033181001 Vitis vinifera HOM05D003633 ORTHO05D004245 3.7e-37 158.3 87 85.1
EL10Ac7g16251 Beta vulgaris HOM05D003633 ORTHO05D004245 4.9e-37 157.9 87 87.4
CiPaw.13G125200 Carya illinoinensis HOM05D003633 ORTHO05D004245 4.9e-37 157.9 87 83.9
Lalb_Chr04g0249831 Lupinus albus HOM05D003633 ORTHO05D004245 4.9e-37 157.9 87 83.9
Mapoly0048s0100 Marchantia polymorpha HOM05D003633 ORTHO05D004245 4.9e-37 157.9 87 85.1
Phvul.009G196800 Phaseolus vulgaris HOM05D003633 ORTHO05D004245 4.9e-37 157.9 87 83.9
TAR636G3505 Trochodendron aralioides HOM05D003633 ORTHO05D004245 4.9e-37 157.9 87 83.9
Ah.08g222470 Amaranthus hybridus HOM05D003633 ORTHO05D004245 6.4e-37 157.5 87 86.2
BcaB06g28118 Brassica carinata HOM05D003633 ORTHO05D004245 6.4e-37 157.5 86 87.2
A04p20650 Brassica napus HOM05D003633 ORTHO05D004245 6.4e-37 157.5 86 87.2
BraA04t17638Z Brassica rapa HOM05D003633 ORTHO05D004245 6.4e-37 157.5 86 87.2
CARHR119560 Cardamine hirsuta HOM05D003633 ORTHO05D004245 6.4e-37 157.5 86 86.0
Cpa.g.sc103.56 Carica papaya HOM05D003633 ORTHO05D004245 6.4e-37 157.5 88 80.7
Sabra09G0121700 Salix brachista HOM05D003633 ORTHO05D004245 6.4e-37 157.5 87 83.9
Potri.009G155200 Populus trichocarpa HOM05D003633 ORTHO05D004245 8.3e-37 157.1 87 82.8
AUR62001588 Chenopodium quinoa HOM05D003633 ORTHO05D004245 1.1e-36 156.8 87 86.2
CANSAT54G1723 Cannabis sativa HOM05D003633 ORTHO05D004245 2.4e-36 155.6 87 82.8
SHI25312 Sapria himalayana HOM05D003633 ORTHO05D004245 2.4e-36 155.6 87 82.8
TPR.G1242 Trifolium pratense HOM05D003633 ORTHO05D004245 3.2e-36 155.2 87 80.5
Zm00001eb297550 Zea mays HOM05D003633 ORTHO05D004245 9.2e-36 153.7 87 81.6
BolC3t15547H Brassica oleracea HOM05D003633 ORTHO05D004245 1.6e-35 152.9 86 83.7
Nitab4.5_0007575g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 1.6e-35 152.9 98 78.6
A03p26730 Brassica napus HOM05D003633 ORTHO05D004245 2.1e-35 152.5 86 83.7
BraA03t11884Z Brassica rapa HOM05D003633 ORTHO05D004245 2.1e-35 152.5 86 83.7
C03p32030 Brassica napus HOM05D003633 ORTHO05D004245 2.7e-35 152.1 86 83.7
CBR_g39805 Chara braunii HOM05D003633 ORTHO05D004245 7.8e-35 150.6 87 78.2
Aa31LG5G8590 Aethionema arabicum HOM05D003633 ORTHO05D004245 1.0e-34 150.2 104 71.2
ClCG02G024050 Citrullus lanatus HOM05D003633 ORTHO05D004245 1.3e-34 149.8 82 84.1
RcHm_v2.0_Chr1g0362081 Rosa chinensis HOM05D003633 ORTHO05D004245 2.3e-34 149.1 84 81.0
Lj2A851G15 Lonicera japonica HOM05D003633 ORTHO05D004245 6.6e-34 147.5 87 80.5
Lj2C853G1 Lonicera japonica HOM05D003633 ORTHO05D004245 1.1e-33 146.7 87 79.3
Lj2A849T12 Lonicera japonica HOM05D003633 ORTHO05D004245 5.6e-33 144.4 86 79.1
PRCOL_00007015 Prasinoderma coloniale HOM05D003633 ORTHO05D004245 7.3e-33 144.1 88 71.6
Lj2A868T26 Lonicera japonica HOM05D003633 ORTHO05D004245 9.6e-33 143.7 87 79.3
Cre10.g445650 Chlamydomonas reinhardtii HOM05D003633 ORTHO05D004245 1.2e-30 136.7 87 69.0
MCO04G096 Micromonas commoda HOM05D003633 ORTHO05D004245 5.8e-30 134.4 87 69.0
unitig_27.g25128 Utricularia gibba HOM05D003633 ORTHO05D004245 3.8e-29 131.7 87 74.7
Haze_27142 Corylus avellana HOM05D003633 ORTHO05D004245 2.7e-27 125.6 87 63.2
MBI05_g07506_MAGBIO Magnolia biondii HOM05D003633 ORTHO05D004245 1.0e-26 123.6 115 59.1
vmacro21588 Vaccinium macrocarpon HOM05D003633 ORTHO05D004245 8.7e-26 120.6 87 71.3
SEGI_13021 Sequoiadendron giganteum HOM05D003633 ORTHO05D004245 1.1e-25 120.2 61 90.2
Cfa023768 Carpinus fangiana HOM05D003633 ORTHO05D004245 1.9e-25 119.4 86 62.8
C04p56430 Brassica napus HOM05D003633 ORTHO05D004245 4.8e-24 114.8 61 86.9
BcaC01g04925 Brassica carinata HOM05D003633 ORTHO05D004245 5.3e-23 111.3 61 85.2
Lj2C874G5 Lonicera japonica HOM05D003633 ORTHO05D004245 6.9e-23 110.9 60 86.7
Lj2C854G2 Lonicera japonica HOM05D003633 ORTHO05D004245 9.0e-23 110.5 60 85.0
Lj2C873G2 Lonicera japonica HOM05D003633 ORTHO05D004245 4.2e-20 101.7 61 78.7
Zm00001eb304300 Zea mays HOM05D009296 ORTHO05D010828 2.7e-19 99.0 57 78.9
Hma1.2p1_0218F.1_g092340 Hydrangea macrophylla HOM05D003633 ORTHO05D004245 4.3e-17 91.7 50 88.0
Lsat_1_v5_gn_2_27661 Lactuca sativa HOM05D003633 ORTHO05D004245 4.8e-16 88.2 48 85.4
Peaxi162Scf00046g00527 Petunia axillaris HOM05D003633 ORTHO05D004245 3.3e-09 65.5 125 35.2
PRCOL_00001774 Prasinoderma coloniale HOM05D002696 ORTHO05D003940 8.1e-08 60.8 83 39.8
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 8.1e-08 60.8 89 36.0
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 1.4e-07 60.1 89 37.1
SEGI_24334 Sequoiadendron giganteum HOM05D003226 ORTHO05D005723 1.5e-06 56.6 94 33.0
Ca_22432_v3 Cicer arietinum L. HOM05D003226 ORTHO05D005723 3.4e-06 55.5 99 33.3
unitig_899.g15524 Utricularia gibba HOM05D003226 ORTHO05D005723 3.4e-06 55.5 96 34.4
Aqoxy5G00921 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 5.8e-06 54.7 85 35.3
HanXRQChr15g0473961 Helianthus annuus HOM05D003226 ORTHO05D005723 5.8e-06 54.7 89 33.7
Aqoxy6G02361 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 7.6e-06 54.3 85 35.3
LjContig00564g0013149 Lotus japonicus HOM05D003633 ORTHO05D004245 7.6e-06 54.3 25 96.0
Cpa.g.sc140.54 Carica papaya HOM05D003226 ORTHO05D005723 1.0e-05 53.9 86 34.9


User provided reference genes

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