Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 0.0e+00 1276.5 631 100.0
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 0.0e+00 1129.4 618 90.9
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 0.0e+00 1106.7 639 87.8
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 0.0e+00 1095.5 578 92.7
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 0.0e+00 1089.3 578 92.9
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 0.0e+00 1088.6 629 87.1
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 0.0e+00 1078.9 638 86.4
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 4.7e-301 1037.3 632 81.8
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.8e-300 1035.4 635 81.6
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 2.8e-293 1011.5 639 79.5
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 5.8e-291 1003.8 648 77.5
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 5.8e-291 1003.8 648 77.5
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.9e-289 998.8 675 75.6
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 5.4e-289 997.3 574 82.9
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 7.1e-289 996.9 598 80.6
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 1.2e-288 996.1 616 79.2
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.6e-288 995.7 585 82.6
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 2.7e-288 995.0 584 82.5
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 2.7e-288 995.0 633 78.8
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 3.5e-288 994.6 630 78.9
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 6.0e-288 993.8 574 82.8
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 1.0e-287 993.0 596 80.5
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.7e-287 992.3 545 86.8
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 3.0e-287 991.5 604 79.3
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 6.6e-287 990.3 613 79.0
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 6.6e-287 990.3 648 76.5
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 8.7e-287 989.9 657 75.6
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.1e-286 989.6 585 81.5
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 4.3e-286 987.6 578 82.2
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 9.6e-286 986.5 574 81.9
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 9.6e-286 986.5 643 76.7
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.1e-285 985.3 638 75.9
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 2.8e-285 984.9 636 76.1
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 6.2e-285 983.8 575 81.4
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 8.1e-285 983.4 643 75.7
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 1.8e-284 982.2 621 76.2
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 1.8e-284 982.2 658 75.8
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 4.0e-284 981.1 649 75.7
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.0e-284 981.1 638 76.0
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 6.9e-284 980.3 646 76.5
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 9.0e-284 979.9 633 76.1
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 9.0e-284 979.9 658 75.4
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 9.0e-284 979.9 632 75.6
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.5e-283 979.2 646 76.5
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.5e-283 979.2 638 76.0
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.0e-283 978.8 638 75.4
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 2.0e-283 978.8 611 77.1
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 7.6e-283 976.9 574 81.9
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 7.6e-283 976.9 579 81.3
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 9.9e-283 976.5 574 82.4
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 1.3e-282 976.1 646 76.0
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 2.2e-282 975.3 575 80.9
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 2.2e-282 975.3 625 77.4
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.9e-282 974.9 630 76.8
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 4.9e-282 974.2 574 80.7
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.4e-281 972.6 587 80.4
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 2.4e-281 971.8 628 76.0
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.4e-281 971.8 574 80.8
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.2e-280 969.5 568 81.9
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.2e-280 969.5 574 80.1
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 4.6e-280 967.6 653 74.9
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 4.6e-280 967.6 604 78.0
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 7.8e-280 966.8 620 76.1
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 1.7e-279 965.7 581 79.7
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 5.1e-279 964.1 607 76.8
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.5e-278 962.6 618 76.7
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 1.9e-278 962.2 634 75.2
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 2.5e-278 961.8 624 75.3
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 5.6e-278 960.7 577 79.4
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 9.6e-278 959.9 545 83.7
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.3e-277 959.5 574 79.4
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.6e-277 959.1 566 81.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 6.2e-277 957.2 577 79.4
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 8.1e-277 956.8 574 79.8
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.9e-276 953.7 577 79.0
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.2e-275 953.0 584 78.1
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.5e-275 952.6 625 74.9
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 5.8e-275 950.7 593 76.9
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 7.6e-275 950.3 618 74.1
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 2.2e-274 948.7 545 81.8
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 3.8e-274 948.0 617 73.9
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 4.9e-274 947.6 626 74.4
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 6.4e-274 947.2 629 75.0
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 6.4e-274 947.2 531 84.4
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 6.4e-274 947.2 528 85.8
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.1e-273 946.4 618 73.6
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.9e-273 945.7 638 74.8
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 3.2e-273 944.9 543 82.0
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 4.2e-273 944.5 572 78.0
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 4.2e-273 944.5 560 79.5
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.2e-272 943.0 556 80.2
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.2e-272 943.0 639 72.9
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 6.0e-272 940.6 572 78.5
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 7.9e-272 940.3 745 66.6
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 1.0e-271 939.9 573 78.2
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 1.8e-271 939.1 573 78.2
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 2.3e-271 938.7 617 73.6
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 8.7e-271 936.8 625 73.3
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.9e-270 935.6 627 73.4
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 5.6e-270 934.1 623 72.7
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.8e-268 929.1 617 76.0
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 4.5e-267 924.5 551 78.9
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 1.1e-262 909.8 615 72.7
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 8.2e-261 903.7 623 71.9
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 2.4e-260 902.1 622 72.5
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 1.2e-259 899.8 622 72.3
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 4.9e-258 894.4 574 74.9
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 1.3e-255 886.3 532 77.8
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.8e-255 885.9 574 74.9
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 2.6e-251 872.1 550 75.5
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 9.4e-249 863.6 642 69.2
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 9.4e-249 863.6 622 69.3
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 2.7e-248 862.1 580 73.4
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 6.9e-244 847.4 607 72.0
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 6.7e-239 830.9 520 77.3
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 8.0e-232 807.4 448 85.7
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 7.4e-230 800.8 448 85.3
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 2.4e-228 795.8 547 68.4
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 3.8e-226 788.5 537 72.1
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.2e-225 785.4 439 84.3
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 1.7e-221 773.1 547 68.0
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 1.8e-220 769.6 588 63.4
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.3e-205 720.3 517 67.9
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 5.2e-191 671.8 452 71.5
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.9e-191 671.0 571 61.8
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 2.0e-182 643.3 538 58.6
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.2e-174 617.5 361 80.3
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 4.6e-163 578.9 344 78.8
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 3.1e-159 566.2 574 55.6
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.6e-147 527.3 372 71.0
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.3e-144 517.7 417 64.7
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 2.8e-144 516.5 541 53.4
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 6.2e-144 515.4 561 49.6
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 7.1e-140 501.9 280 84.3
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.2e-139 501.1 278 84.9
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 6.1e-131 472.2 331 71.3
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.7e-115 420.2 576 43.8
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.7e-112 411.0 288 69.4
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 3.5e-94 350.1 656 34.9
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 7.2e-92 342.4 184 84.8
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.0e-90 338.6 263 66.9
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.1e-83 314.3 188 77.7
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.0e-82 312.0 499 38.5
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 4.9e-80 303.1 179 82.1
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.9e-79 301.2 600 35.5
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.6e-78 296.6 179 78.8
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 9.5e-76 288.9 167 81.4
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 4.7e-75 286.6 585 34.2
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 5.1e-69 266.5 610 33.6
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 6.6e-69 266.2 321 48.0
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 9.9e-65 252.3 140 82.1
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 4.1e-63 246.9 185 68.6
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 4.3e-60 236.9 596 30.4
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.0e-50 203.8 117 80.3
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.3e-48 198.7 120 83.3
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 5.6e-44 183.3 107 80.4
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.4e-42 177.9 98 86.7
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 4.9e-40 170.2 155 56.8
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.4e-39 166.8 118 71.2
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.2e-31 140.6 106 68.9
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 4.6e-30 137.1 81 76.5
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.1e-27 128.3 137 49.6
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 3.7e-27 127.5 67 86.6
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 8.2e-27 126.3 65 90.8
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 1.8e-26 125.2 94 68.1
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 1.1e-20 105.9 64 81.2
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.7e-11 75.5 54 70.4
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 2.2e-11 75.1 120 41.7
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 1.8e-10 72.0 61 62.3
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 7.2e-07 60.1 38 65.8
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.1e-06 58.5 57 54.4


User provided reference genes

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