Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G648.4 Capsicum annuum HOM05D000274 ORTHO05D002552 6.0e-32 140.2 69 100.0
CAN.G219.29 Capsicum annuum HOM05D000274 ORTHO05D002552 1.5e-27 125.6 68 86.8
CAN.G1739.8 Capsicum annuum HOM05D000274 ORTHO05D002552 3.4e-27 124.4 68 85.3
CAN.G702.46 Capsicum annuum HOM05D000743 ORTHO05D000580 9.6e-22 106.3 68 75.0
SalBow1G7090 Salvia bowleyana HOM05D000274 ORTHO05D002552 6.2e-21 103.6 68 72.1
BcaC03g15273 Brassica carinata HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
BcaC07g42433 Brassica carinata HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
BNapus_Darmor_BZH_scaffold_287p00220 Brassica napus HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
C02p28700 Brassica napus HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
C02p43600 Brassica napus HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
C06p22930 Brassica napus HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
C06p23060 Brassica napus HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
BolSC29t60600H Brassica oleracea HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
BolSC35t60659H Brassica oleracea HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
BolSC46t61010H Brassica oleracea HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
BraSC103t45477Z Brassica rapa HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
BraSC138t45563Z Brassica rapa HOM05D000274 ORTHO05D002552 1.1e-20 102.8 68 70.6
AL2G21640 Arabidopsis lyrata HOM05D000274 ORTHO05D002552 1.4e-20 102.4 68 70.6
CARHR282180 Cardamine hirsuta HOM05D000274 ORTHO05D002552 1.4e-20 102.4 68 70.6
DCAR_032510 Daucus carota HOM05D000274 ORTHO05D002552 1.4e-20 102.4 68 72.1
ATCG00670 Arabidopsis thaliana HOM05D000274 ORTHO05D002552 1.8e-20 102.1 68 69.1
Cfa021574 Carpinus fangiana HOM05D000274 ORTHO05D002552 1.8e-20 102.1 66 71.2
LjContig00318g0024179 Lotus japonicus HOM05D000274 ORTHO05D002552 1.8e-20 102.1 68 70.6
Gohir.A05G285000 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.4e-20 101.7 68 70.6
Gohir.D01G102021 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.4e-20 101.7 68 70.6
Gorai.009G282800 Gossypium raimondii HOM05D000274 ORTHO05D002552 2.4e-20 101.7 68 70.6
PSO548G0031 Papaver somniferum HOM05D000274 ORTHO05D002552 2.4e-20 101.7 68 72.1
Nitab4.5_0010531g0050 Nicotiana tabacum HOM05D000274 ORTHO05D002552 3.1e-20 101.3 68 70.6
PGR111G0023 Punica granatum HOM05D000274 ORTHO05D002552 3.1e-20 101.3 68 70.6
RcHm_v2.0_CPg0501991 Rosa chinensis HOM05D000274 ORTHO05D002552 3.1e-20 101.3 68 70.6
C04p42950 Brassica napus HOM05D000274 ORTHO05D002552 4.0e-20 100.9 68 69.1
BolC4t25865H Brassica oleracea HOM05D000274 ORTHO05D002552 4.0e-20 100.9 68 69.1
Sc24g0000880 Simmondsia chinensis HOM05D000274 ORTHO05D002552 4.0e-20 100.9 68 70.6
BcaB02g11359 Brassica carinata HOM05D000274 ORTHO05D002552 5.2e-20 100.5 67 68.7
Gohir.D06G018300 Gossypium hirsutum HOM05D000274 ORTHO05D002552 6.9e-20 100.1 68 69.1
SalBow6G1627 Salvia bowleyana HOM05D000274 ORTHO05D002552 6.9e-20 100.1 68 69.1
Sed0002260 Sechium edule HOM05D000274 ORTHO05D002552 6.9e-20 100.1 68 66.2
Sed0019404 Sechium edule HOM05D000274 ORTHO05D002552 6.9e-20 100.1 68 66.2
Sed0022936 Sechium edule HOM05D000274 ORTHO05D002552 6.9e-20 100.1 68 66.2
Gohir.A12G229201 Gossypium hirsutum HOM05D000274 ORTHO05D002552 8.9e-20 99.8 68 69.1
EL10Ac5g13040 Beta vulgaris HOM05D000274 ORTHO05D002552 1.2e-19 99.4 68 69.1
EL10As12g24030 Beta vulgaris HOM05D000274 ORTHO05D002552 1.2e-19 99.4 68 69.1
C09p40540 Brassica napus HOM05D000274 ORTHO05D002552 1.5e-19 99.0 68 67.6
Lalb_Chr07g0192041 Lupinus albus HOM05D000274 ORTHO05D002552 1.5e-19 99.0 68 67.6
arahy.Tifrunner.gnm1.ann1.002YPW Arachis hypogaea HOM05D000274 ORTHO05D002552 2.6e-19 98.2 68 67.6
arahy.Tifrunner.gnm1.ann1.3I6E4U Arachis hypogaea HOM05D000274 ORTHO05D002552 2.6e-19 98.2 68 67.6
arahy.Tifrunner.gnm1.ann1.JE9GG4 Arachis hypogaea HOM05D000274 ORTHO05D002552 2.6e-19 98.2 68 67.6
arahy.Tifrunner.gnm1.ann1.KX9QRC Arachis hypogaea HOM05D000274 ORTHO05D002552 2.6e-19 98.2 68 67.6
MELO3C027089.2 Cucumis melo HOM05D000274 ORTHO05D002552 3.4e-19 97.8 68 66.2
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 4.4e-19 97.4 66 66.7
Sc02g0004580 Simmondsia chinensis HOM05D000274 ORTHO05D002552 4.4e-19 97.4 68 66.2
arahy.Tifrunner.gnm1.ann1.8S8FMR Arachis hypogaea HOM05D000274 ORTHO05D002552 7.6e-19 96.7 68 66.2
arahy.Tifrunner.gnm1.ann1.H8UXH3 Arachis hypogaea HOM05D000274 ORTHO05D002552 7.6e-19 96.7 68 66.2
EL10Ac1g01444 Beta vulgaris HOM05D000274 ORTHO05D002552 7.6e-19 96.7 68 66.2
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 7.6e-19 96.7 66 65.2
Sc09g0009710 Simmondsia chinensis HOM05D000274 ORTHO05D002552 7.6e-19 96.7 68 67.6
Phvul.002G090301 Phaseolus vulgaris HOM05D000274 ORTHO05D002552 9.9e-19 96.3 68 64.7
SabraPtG0003900 Salix brachista HOM05D000274 ORTHO05D002552 9.9e-19 96.3 68 67.6
Eucgr.I00671 Eucalyptus grandis HOM05D000274 ORTHO05D002552 1.3e-18 95.9 68 64.7
MD11G1294400 Malus domestica HOM05D000274 ORTHO05D002552 1.7e-18 95.5 68 66.2
Solyc00g500023.1 Solanum lycopersicum HOM05D000274 ORTHO05D002552 1.7e-18 95.5 66 63.6
ECA074G0006 Erigeron canadensis HOM05D000274 ORTHO05D002552 4.9e-18 94.0 68 64.7
ATR0303G006 Amborella trichopoda HOM05D000274 ORTHO05D002552 6.4e-18 93.6 68 64.7
Sed0002969 Sechium edule HOM05D000274 ORTHO05D002552 6.4e-18 93.6 61 68.9
RcHm_v2.0_Chr6g0260431 Rosa chinensis HOM05D000274 ORTHO05D002552 8.4e-18 93.2 63 69.8
Gohir.D06G104800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.1e-17 92.8 68 64.7
SMO086G0017 Selaginella moellendorffii HOM05D000274 ORTHO05D002552 1.1e-17 92.8 68 57.4
Gohir.D02G116125 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.9e-17 92.0 66 62.1
Gohir.D06G113800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.9e-17 92.0 68 63.2
Gohir.D07G185750 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.9e-17 92.0 61 72.1
HanXRQChr04g0094301 Helianthus annuus HOM05D000274 ORTHO05D002552 1.9e-17 92.0 68 64.7
Lsat_1_v5_gn_9_50981 Lactuca sativa HOM05D000274 ORTHO05D002552 1.9e-17 92.0 68 64.7
HanXRQChr00c0314g0573521 Helianthus annuus HOM05D000274 ORTHO05D002552 2.4e-17 91.7 68 64.7
HanXRQChr01g0020281 Helianthus annuus HOM05D000274 ORTHO05D002552 2.4e-17 91.7 68 64.7
HanXRQChr10g0283621 Helianthus annuus HOM05D000274 ORTHO05D002552 2.4e-17 91.7 68 64.7
HanXRQChr10g0284311 Helianthus annuus HOM05D000274 ORTHO05D002552 2.4e-17 91.7 68 64.7
HanXRQChr10g0289321 Helianthus annuus HOM05D000274 ORTHO05D002552 2.4e-17 91.7 68 64.7
HanXRQChr10g0318131 Helianthus annuus HOM05D000274 ORTHO05D002552 2.4e-17 91.7 68 64.7
HanXRQChr11g0326901 Helianthus annuus HOM05D000274 ORTHO05D002552 2.4e-17 91.7 68 64.7
HanXRQCPg0580111 Helianthus annuus HOM05D000274 ORTHO05D002552 2.4e-17 91.7 68 64.7
PGSC0003DMG402022617 Solanum tuberosum HOM05D000274 ORTHO05D002552 2.4e-17 91.7 57 73.7
Nitab4.5_0005769g0060 Nicotiana tabacum HOM05D000274 ORTHO05D002552 3.2e-17 91.3 66 65.2
MBI06_g25326_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 5.4e-17 90.5 68 63.2
EL10As15g24108 Beta vulgaris HOM05D000274 ORTHO05D002552 9.3e-17 89.7 61 67.2
BcaC02g09867 Brassica carinata HOM05D000274 ORTHO05D002552 9.3e-17 89.7 59 69.5
C04p35750 Brassica napus HOM05D000274 ORTHO05D002552 9.3e-17 89.7 59 69.5
BolC4t25226H Brassica oleracea HOM05D000274 ORTHO05D002552 9.3e-17 89.7 59 69.5
Gorai.010G129800 Gossypium raimondii HOM05D000274 ORTHO05D002552 1.2e-16 89.4 66 66.7
HanXRQChr04g0095101 Helianthus annuus HOM05D000274 ORTHO05D002552 1.2e-16 89.4 68 63.2
HanXRQChr11g0345211 Helianthus annuus HOM05D000274 ORTHO05D002552 1.2e-16 89.4 68 63.2
Lalb_Chr04g0260931 Lupinus albus HOM05D000216 ORTHO05D002552 2.1e-16 88.6 60 68.3
Gohir.D09G093050 Gossypium hirsutum HOM05D000274 ORTHO05D002552 3.5e-16 87.8 74 60.8
Lsat_1_v5_gn_4_11460 Lactuca sativa HOM05D000274 ORTHO05D002552 3.5e-16 87.8 52 78.8
Medtr0002s0730 Medicago truncatula HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
Zm00001eb039170 Zea mays HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
Zm00001eb255900 Zea mays HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
Zm00001eb434890 Zea mays HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
Zm00001eb435080 Zea mays HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
Zm00001eb435150 Zea mays HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
Zm00001eb435370 Zea mays HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
Zm00001eb437160 Zea mays HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
Zm00001eb439970 Zea mays HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
Zm00001eb440350 Zea mays HOM05D000274 ORTHO05D002552 4.6e-16 87.4 66 57.6
ATR1132G067 Amborella trichopoda HOM05D000274 ORTHO05D002552 6.0e-16 87.0 68 58.8
Gohir.A10G134850 Gossypium hirsutum HOM05D000274 ORTHO05D002552 6.0e-16 87.0 68 58.8
BolSC29t60479H Brassica oleracea HOM05D000274 ORTHO05D002552 7.8e-16 86.7 69 59.4
Ciclev10003424m.g Citrus clementina HOM05D000274 ORTHO05D002552 1.3e-15 85.9 61 63.9
COL.COLO4_02977 Corchorus olitorius HOM05D000274 ORTHO05D002552 2.3e-15 85.1 66 54.5
COL.COLO4_03028 Corchorus olitorius HOM05D000274 ORTHO05D002552 2.3e-15 85.1 66 54.5
COL.COLO4_03061 Corchorus olitorius HOM05D000274 ORTHO05D002552 2.3e-15 85.1 66 54.5
COL.COLO4_04073 Corchorus olitorius HOM05D000274 ORTHO05D002552 2.3e-15 85.1 66 54.5
Lalb_Chr03g0038761 Lupinus albus HOM05D000274 ORTHO05D002552 3.0e-15 84.7 68 58.8
Glyma.20G048700 Glycine max HOM05D000274 ORTHO05D002552 8.7e-15 83.2 49 75.5
Gorai.010G140000 Gossypium raimondii HOM05D000274 ORTHO05D002552 8.7e-15 83.2 58 67.2
Medtr4g034690 Medicago truncatula HOM05D000274 ORTHO05D002552 8.7e-15 83.2 66 53.0
Medtr4g077730 Medicago truncatula HOM05D000274 ORTHO05D002552 8.7e-15 83.2 66 53.0
Gohir.1Z050580 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.5e-14 82.4 48 79.2
Gorai.002G264000 Gossypium raimondii HOM05D000274 ORTHO05D002552 1.5e-14 82.4 61 62.3
HanXRQChr06g0177591 Helianthus annuus HOM05D000274 ORTHO05D002552 2.5e-14 81.6 68 58.8
MBI18_g10796_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 2.5e-14 81.6 68 57.4
Lsat_1_v5_gn_4_118880 Lactuca sativa HOM05D000274 ORTHO05D002552 3.3e-14 81.3 68 57.4
BolC7t41719H Brassica oleracea HOM05D000274 ORTHO05D002552 5.6e-14 80.5 61 60.7
HanXRQChr02g0052561 Helianthus annuus HOM05D000274 ORTHO05D002552 5.6e-14 80.5 53 75.5
MBI13_g29602_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 5.6e-14 80.5 52 71.2
Gorai.002G210500 Gossypium raimondii HOM05D000274 ORTHO05D002552 1.3e-13 79.3 68 55.9
HanXRQChr00c0557g0575781 Helianthus annuus HOM05D000274 ORTHO05D002552 1.3e-13 79.3 55 69.1
MBI16_g04458_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 1.3e-13 79.3 50 70.0
Psat0s1446g0160 Pisum sativum HOM05D000274 ORTHO05D002552 1.3e-13 79.3 66 50.0
Psat0s7142g0080 Pisum sativum HOM05D000274 ORTHO05D002552 1.3e-13 79.3 66 50.0
Solyc00g500070.1 Solanum lycopersicum HOM05D000274 ORTHO05D002552 2.8e-13 78.2 57 63.2
Gohir.D01G217650 Gossypium hirsutum HOM05D000274 ORTHO05D002552 4.8e-13 77.4 61 59.0
Gohir.D01G169088 Gossypium hirsutum HOM05D000274 ORTHO05D002552 6.2e-13 77.0 68 54.4
Lsat_1_v5_gn_2_43961 Lactuca sativa HOM05D000274 ORTHO05D002552 6.2e-13 77.0 52 67.3
QL93p0311_0006 Quercus lobata HOM05D000274 ORTHO05D002552 8.1e-13 76.6 44 75.0
EL10Ac1g01196 Beta vulgaris HOM05D000274 ORTHO05D002552 1.4e-12 75.9 68 58.8
MBI14_g44884_MAGBIO Magnolia biondii HOM05D000537 ORTHO05D000415 5.3e-12 73.9 53 62.3
arahy.Tifrunner.gnm1.ann1.M2WIVZ Arachis hypogaea HOM05D000274 ORTHO05D002552 1.5e-11 72.4 59 59.3
Hund27967 Selenicereus undatus HOM05D000274 ORTHO05D002552 3.4e-11 71.2 48 60.4
Hund10283 Selenicereus undatus HOM05D000274 ORTHO05D002552 7.6e-11 70.1 48 62.5
Hund27992 Selenicereus undatus HOM05D000274 ORTHO05D002552 7.6e-11 70.1 48 62.5
Lsat_1_v5_gn_5_50301 Lactuca sativa HOM05D000274 ORTHO05D002552 6.4e-10 67.0 58 55.2
Duzib026G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib071G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib086G0003 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib124G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib125G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib162G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib185G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib225G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib233G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib237G0004 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib252G0003 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib253G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
Duzib275G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 7.1e-09 63.5 50 50.0
BraSC103t45453Z Brassica rapa HOM05D000274 ORTHO05D002552 6.0e-08 60.5 43 65.1
Hund12884 Selenicereus undatus HOM05D000274 ORTHO05D002552 6.0e-08 60.5 48 54.2
Gorai.012G094800 Gossypium raimondii HOM05D007792 ORTHO05D009931 7.9e-08 60.1 45 60.0
Gorai.013G004600 Gossypium raimondii HOM05D000274 ORTHO05D002552 7.9e-08 60.1 68 47.1
Gohir.D04G084960 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.3e-07 59.3 45 57.8
Gohir.D12G107600 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.3e-07 58.5 41 68.3
CAN.G942.1 Capsicum annuum HOM05D000274 ORTHO05D005803 1.1e-06 56.2 66 33.3
Lj2P1234T105 Lonicera japonica HOM05D000274 ORTHO05D002552 1.1e-06 56.2 68 36.8
Lj2P1237T114 Lonicera japonica HOM05D000274 ORTHO05D002552 1.1e-06 56.2 68 36.8
Lj2P1239T87 Lonicera japonica HOM05D000274 ORTHO05D002552 1.1e-06 56.2 68 36.8
Sopen04g004430 Solanum pennellii HOM05D000274 ORTHO05D005803 3.3e-06 54.7 66 31.8
C07p44390 Brassica napus HOM05D000274 ORTHO05D005803 5.6e-06 53.9 66 30.3
arahy.Tifrunner.gnm1.ann1.I14ERJ Arachis hypogaea HOM05D000274 ORTHO05D005803 7.4e-06 53.5 66 30.3
arahy.Tifrunner.gnm1.ann1.JE56K8 Arachis hypogaea HOM05D000274 ORTHO05D005803 7.4e-06 53.5 66 30.3
BolC7t44961H Brassica oleracea HOM05D000274 ORTHO05D005803 7.4e-06 53.5 66 30.3
BraA03t13763Z Brassica rapa HOM05D000274 ORTHO05D005803 7.4e-06 53.5 66 31.8
CARHR204940 Cardamine hirsuta HOM05D000274 ORTHO05D005803 7.4e-06 53.5 66 30.3
A03p46370 Brassica napus HOM05D000274 ORTHO05D005803 9.6e-06 53.1 66 31.8
Medtr4g075100 Medicago truncatula HOM05D000274 ORTHO05D005803 9.6e-06 53.1 66 30.3
HPP92_028400 Vanilla planifolia HOM05D000274 ORTHO05D002552 9.6e-06 53.1 68 35.3
HPP92_028425 Vanilla planifolia HOM05D000274 ORTHO05D002552 9.6e-06 53.1 68 35.3


User provided reference genes

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