Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G646.3 Capsicum annuum HOM05D004102 ORTHO05D003884 4.7e-92 341.3 183 100.0
CAN.G1638.2 Capsicum annuum HOM05D001003 ORTHO05D003884 1.3e-41 173.7 101 94.1
Sopen05g007610 Solanum pennellii HOM05D001003 ORTHO05D003884 7.8e-39 164.5 101 87.1
PGSC0003DMG400028336 Solanum tuberosum HOM05D001003 ORTHO05D003884 5.1e-38 161.8 101 86.1
Solyc05g012790.4 Solanum lycopersicum HOM05D001003 ORTHO05D003884 1.1e-37 160.6 101 84.2
Nitab4.5_0000391g0090 Nicotiana tabacum HOM05D001003 ORTHO05D003884 7.6e-34 147.9 101 79.2
Nitab4.5_0005448g0010 Nicotiana tabacum HOM05D001003 ORTHO05D003884 2.4e-32 142.9 101 78.2
Peaxi162Scf00222g00123 Petunia axillaris HOM05D001003 ORTHO05D003884 2.7e-31 139.4 101 78.2
CAN.G53.6 Capsicum annuum HOM05D004102 ORTHO05D028485 9.6e-29 131.0 175 53.1
CSS0002914 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 9.7e-13 77.8 103 48.5
Actinidia12306 Actinidia chinensis HOM05D001003 ORTHO05D003884 1.3e-12 77.4 103 49.5
Dinv16693 Davidia involucrata HOM05D001003 ORTHO05D003884 1.8e-11 73.6 102 47.1
Cc11_g12510 Coffea canephora HOM05D001003 ORTHO05D003884 2.0e-10 70.1 101 43.6
ECA233G1502 Erigeron canadensis HOM05D001003 ORTHO05D003884 4.5e-10 68.9 101 46.5
CSS0022092 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 1.0e-09 67.8 103 45.6
CSS0040469 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 1.0e-09 67.8 103 45.6
TPR.G19939 Trifolium pratense HOM05D001003 ORTHO05D003884 2.2e-09 66.6 100 44.0
TAR629G1202 Trochodendron aralioides HOM05D000759 ORTHO05D000574 3.8e-09 65.9 103 42.7
DCAR_030990 Daucus carota HOM05D001003 ORTHO05D003884 5.0e-09 65.5 104 46.2
Hma1.2p1_0357F.1_g134320 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 6.5e-09 65.1 102 43.1
CAN.G771.28 Capsicum annuum HOM05D004102 ORTHO05D005307 1.1e-08 64.3 37 86.5
Lsat_1_v5_gn_8_49341 Lactuca sativa HOM05D001003 ORTHO05D003884 1.1e-08 64.3 103 42.7
Glyma.01G053300 Glycine max HOM05D001003 ORTHO05D003884 1.9e-08 63.5 101 43.6
HanXRQChr12g0361761 Helianthus annuus HOM05D001003 ORTHO05D003884 1.9e-08 63.5 101 41.6
SalBow2G3343 Salvia bowleyana HOM05D001003 ORTHO05D003884 1.9e-08 63.5 102 45.1
vmacro16352 Vaccinium macrocarpon HOM05D001003 ORTHO05D003884 1.9e-08 63.5 103 47.6
HanXRQChr08g0211101 Helianthus annuus HOM05D001003 ORTHO05D003884 3.2e-08 62.8 102 44.1
Hma1.2p1_0354F.1_g133760 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 3.2e-08 62.8 101 46.5
Glyma.02G111800 Glycine max HOM05D001003 ORTHO05D003884 5.5e-08 62.0 101 43.6
Nitab4.5_0000470g0060 Nicotiana tabacum HOM05D004102 ORTHO05D005307 5.5e-08 62.0 37 86.5
Nitab4.5_0006457g0030 Nicotiana tabacum HOM05D004102 ORTHO05D005307 5.5e-08 62.0 37 86.5
SalBow2G2671 Salvia bowleyana HOM05D001003 ORTHO05D003884 5.5e-08 62.0 102 44.1
Ciclev10030950m.g Citrus clementina HOM05D001003 ORTHO05D003884 7.2e-08 61.6 102 46.1
Lj6A783T47 Lonicera japonica HOM05D001003 ORTHO05D003884 1.2e-07 60.8 103 45.6
Peaxi162Scf00855g00004 Petunia axillaris HOM05D004102 ORTHO05D005307 1.2e-07 60.8 37 86.5
Solyc06g083870.3 Solanum lycopersicum HOM05D004102 ORTHO05D005307 1.2e-07 60.8 37 83.8
Sopen06g035270 Solanum pennellii HOM05D004102 ORTHO05D005307 1.2e-07 60.8 37 83.8
unitig_37.g12599 Utricularia gibba HOM05D001236 ORTHO05D005307 1.2e-07 60.8 37 83.8
GSVIVG01012479001 Vitis vinifera HOM05D001003 ORTHO05D003884 1.2e-07 60.8 101 41.6
Medtr5g042870 Medicago truncatula HOM05D001003 ORTHO05D003884 1.6e-07 60.5 101 43.6
Oeu016759.2 Olea europaea HOM05D001003 ORTHO05D003884 1.6e-07 60.5 101 44.6
ClCG09G008240 Citrullus lanatus HOM05D004102 ORTHO05D005307 2.1e-07 60.1 37 83.8
Cc01_g18290 Coffea canephora HOM05D004102 ORTHO05D005307 2.1e-07 60.1 37 83.8
MELO3C012730.2 Cucumis melo HOM05D004102 ORTHO05D005307 2.1e-07 60.1 37 83.8
CsaV3_7G026800 Cucumis sativus L. HOM05D004102 ORTHO05D005307 2.1e-07 60.1 37 83.8
DCAR_007176 Daucus carota HOM05D001003 ORTHO05D003884 2.1e-07 60.1 104 44.2
Rhsim12G0077800 Rhododendron simsii HOM05D001003 ORTHO05D003884 2.1e-07 60.1 105 41.0
Atru.chr5.1694 Acer truncatum HOM05D004102 ORTHO05D005307 2.7e-07 59.7 37 83.8
Lj2g0023172 Lotus japonicus HOM05D001003 ORTHO05D003884 2.7e-07 59.7 101 39.6
Lj2g0027573 Lotus japonicus HOM05D001003 ORTHO05D003884 2.7e-07 59.7 101 39.6
Oeu057653.1 Olea europaea HOM05D001003 ORTHO05D003884 2.7e-07 59.7 102 45.1
QL03p069884 Quercus lobata HOM05D001003 ORTHO05D003884 2.7e-07 59.7 101 43.6
RcHm_v2.0_Chr6g0287971 Rosa chinensis HOM05D004102 ORTHO05D005307 3.6e-07 59.3 37 81.1
VMungo1215G0244 Vigna mungo HOM05D001003 ORTHO05D003884 3.6e-07 59.3 102 42.2
Ah.11g049770 Amaranthus hybridus HOM05D004102 ORTHO05D005307 4.6e-07 58.9 37 81.1
Cpa.g.sc50.12 Carica papaya HOM05D004102 ORTHO05D005307 4.6e-07 58.9 37 81.1
Ca_25945_v3 Cicer arietinum L. HOM05D001003 ORTHO05D003884 4.6e-07 58.9 101 42.6
MSTRG.12532 Avicennia marina HOM05D004102 ORTHO05D005307 6.1e-07 58.5 37 81.1
CAN.G184.4 Capsicum annuum HOM05D006329 ORTHO05D028485 6.1e-07 58.5 36 80.6
Duzib133G0778 Durio zibethinus HOM05D004102 ORTHO05D005307 6.1e-07 58.5 51 66.7
Peaxi162Scf00095g00526 Petunia axillaris HOM05D000007 ORTHO05D000017 6.1e-07 58.5 133 39.1
Thecc.01G257700 Theobroma cacao HOM05D004102 ORTHO05D005307 6.1e-07 58.5 51 66.7
TAR362G0337 Trochodendron aralioides HOM05D004102 ORTHO05D005307 6.1e-07 58.5 37 81.1
HanXRQChr02g0038071 Helianthus annuus HOM05D004102 ORTHO05D005307 7.9e-07 58.2 37 78.4
MD10G1183700 Malus domestica HOM05D004102 ORTHO05D005307 7.9e-07 58.2 37 78.4
Prupe.8G222900 Prunus persica HOM05D004102 ORTHO05D005307 7.9e-07 58.2 37 78.4
Sabra05G0173500 Salix brachista HOM05D004102 ORTHO05D005307 7.9e-07 58.2 41 70.7
Cfa002432 Carpinus fangiana HOM05D004102 ORTHO05D005307 1.0e-06 57.8 37 78.4
Haze_24635 Corylus avellana HOM05D004102 ORTHO05D005307 1.0e-06 57.8 37 78.4
DCAR_005687 Daucus carota HOM05D004102 ORTHO05D005307 1.0e-06 57.8 37 81.1
PGR031G2496 Punica granatum HOM05D004102 ORTHO05D005307 1.0e-06 57.8 37 78.4
Rhsim12G0133200 Rhododendron simsii HOM05D001003 ORTHO05D003884 1.0e-06 57.8 103 45.6
CANSAT64G2791 Cannabis sativa HOM05D001003 ORTHO05D003884 1.4e-06 57.4 101 39.6
CiPaw.03G264900 Carya illinoinensis HOM05D004102 ORTHO05D005307 1.8e-06 57.0 37 78.4
COL.COLO4_03878 Corchorus olitorius HOM05D004102 ORTHO05D005307 1.8e-06 57.0 37 78.4
COL.COLO4_04038 Corchorus olitorius HOM05D004102 ORTHO05D005307 1.8e-06 57.0 37 78.4
Haze_12574 Corylus avellana HOM05D004102 ORTHO05D000687 1.8e-06 57.0 44 68.2
ECA236G1622 Erigeron canadensis HOM05D004102 ORTHO05D005307 1.8e-06 57.0 37 73.0
Psat7g154200 Pisum sativum HOM05D001003 ORTHO05D003884 1.8e-06 57.0 100 41.0
Sed0028046 Sechium edule HOM05D004102 ORTHO05D005307 1.8e-06 57.0 37 78.4
Actinidia07299 Actinidia chinensis HOM05D004102 ORTHO05D005307 2.3e-06 56.6 37 75.7
Ciclev10024065m.g Citrus clementina HOM05D004102 ORTHO05D005307 2.3e-06 56.6 37 78.4
Duzib138G0514 Durio zibethinus HOM05D004102 ORTHO05D005307 2.3e-06 56.6 51 64.7
Lj1A67T41 Lonicera japonica HOM05D004102 ORTHO05D005307 2.3e-06 56.6 37 78.4
Nn3g19665 Nelumbo nucifera HOM05D004102 ORTHO05D005307 2.3e-06 56.6 58 56.9
Oeu025851.5 Olea europaea HOM05D004102 ORTHO05D005307 2.3e-06 56.6 39 74.4
vmacro02666 Vaccinium macrocarpon HOM05D004102 ORTHO05D005307 2.3e-06 56.6 37 78.4
AUR62011867 Chenopodium quinoa HOM05D004102 ORTHO05D005307 3.0e-06 56.2 37 78.4
Migut.N02206 Erythranthe guttata HOM05D004102 ORTHO05D005307 3.0e-06 56.2 37 78.4
Gohir.A07G213200 Gossypium hirsutum HOM05D004102 ORTHO05D005307 3.0e-06 56.2 37 75.7
Oeu021090.2 Olea europaea HOM05D001003 ORTHO05D003884 3.0e-06 56.2 102 40.2
AUR62024710 Chenopodium quinoa HOM05D004102 ORTHO05D005307 3.9e-06 55.8 37 78.4
FvH4_2g21371 Fragaria vesca HOM05D004102 ORTHO05D005307 3.9e-06 55.8 37 75.7
FAN15G3235 Fragaria x ananassa HOM05D004102 ORTHO05D005307 3.9e-06 55.8 37 75.7
FAN20G2335 Fragaria x ananassa HOM05D004102 ORTHO05D005307 3.9e-06 55.8 37 75.7
FAN24G0573 Fragaria x ananassa HOM05D004102 ORTHO05D005307 3.9e-06 55.8 37 75.7
FAN27G0190 Fragaria x ananassa HOM05D004102 ORTHO05D005307 3.9e-06 55.8 37 75.7
Gohir.D07G219350 Gossypium hirsutum HOM05D004102 ORTHO05D005307 3.9e-06 55.8 51 62.7
Gorai.001G253800 Gossypium raimondii HOM05D004102 ORTHO05D005307 3.9e-06 55.8 51 62.7
Manes.12G032800 Manihot esculenta HOM05D004102 ORTHO05D005307 3.9e-06 55.8 37 75.7
Phvul.002G091400 Phaseolus vulgaris HOM05D001003 ORTHO05D003884 3.9e-06 55.8 102 41.2
TWI18G1245 Tripterygium wilfordii HOM05D004102 ORTHO05D005307 3.9e-06 55.8 37 73.0
CSS0001085 Camellia sinensis var. sinensis HOM05D004102 ORTHO05D005307 5.1e-06 55.5 37 78.4
Lj2g0002321 Lotus japonicus HOM05D004102 ORTHO05D005307 5.1e-06 55.5 37 75.7
MBI07_g16928_MAGBIO Magnolia biondii HOM05D004102 ORTHO05D005307 5.1e-06 55.5 46 63.0
MD05G1196500 Malus domestica HOM05D004102 ORTHO05D005307 5.1e-06 55.5 37 73.0
Potri.005G224900 Populus trichocarpa HOM05D004102 ORTHO05D005307 6.7e-06 55.1 37 73.0
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 6.7e-06 55.1 37 75.7
EL10As5g23471 Beta vulgaris HOM05D004102 ORTHO05D005307 8.8e-06 54.7 37 73.0
Dinv34632 Davidia involucrata HOM05D004102 ORTHO05D005307 8.8e-06 54.7 37 75.7
Lsat_1_v5_gn_8_92740 Lactuca sativa HOM05D004102 ORTHO05D005307 8.8e-06 54.7 37 73.0
TPR.G23973 Trifolium pratense HOM05D004102 ORTHO05D005307 8.8e-06 54.7 37 75.7
TPR.G34088 Trifolium pratense HOM05D001003 ORTHO05D003884 8.8e-06 54.7 101 40.6


User provided reference genes

Program Settings