Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 6.2e-222 773.9 400 100.0
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 4.3e-122 442.2 424 61.8
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.4e-117 427.2 404 61.1
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 1.6e-116 423.7 424 59.2
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 3.3e-114 416.0 373 63.3
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 3.6e-113 412.5 373 62.5
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 8.4e-102 374.8 404 55.9
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 5.3e-80 302.4 394 46.2
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 2.2e-78 297.0 374 45.5
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 1.9e-77 293.9 373 46.4
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 3.5e-76 289.7 403 45.2
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 7.9e-76 288.5 374 47.9
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.3e-75 287.7 373 46.1
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 1.8e-75 287.3 401 44.1
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 3.9e-75 286.2 400 43.5
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 8.7e-75 285.0 402 43.5
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 8.7e-75 285.0 373 45.3
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 2.8e-73 280.0 373 45.3
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 3.7e-73 279.6 387 43.2
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 6.2e-73 278.9 374 47.3
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 2.6e-71 273.5 373 44.2
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 7.6e-71 271.9 373 44.0
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 6.5e-70 268.9 374 46.3
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 4.2e-69 266.2 395 40.8
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 9.3e-69 265.0 418 41.4
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 2.7e-68 263.5 374 44.4
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 5.1e-67 259.2 373 42.1
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 5.1e-67 259.2 373 41.8
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 7.4e-66 255.4 371 41.8
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 2.8e-65 253.4 371 41.5
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 2.8e-65 253.4 372 40.3
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 2.4e-64 250.4 372 40.1
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 2.4e-64 250.4 430 37.9
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 6.9e-64 248.8 374 41.7
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 6.9e-64 248.8 374 41.7
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 6.9e-64 248.8 373 42.4
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 6.9e-64 248.8 371 41.5
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 9.0e-64 248.4 374 40.9
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 1.2e-63 248.1 408 39.7
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 1.5e-63 247.7 374 40.9
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 1.5e-63 247.7 442 38.9
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 2.0e-63 247.3 374 41.2
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 4.5e-63 246.1 374 41.2
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 4.5e-63 246.1 371 40.7
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 5.9e-63 245.7 419 38.9
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 1.3e-62 244.6 371 39.6
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.3e-62 244.6 374 43.3
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 1.7e-62 244.2 372 40.1
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 5.0e-62 242.7 373 39.9
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 1.9e-61 240.7 372 39.0
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 3.2e-61 240.0 372 39.8
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 7.2e-61 238.8 402 38.3
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.2e-60 238.0 339 44.2
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 2.1e-60 237.3 372 40.1
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 2.1e-60 237.3 372 40.1
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 2.7e-60 236.9 372 39.2
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 3.0e-59 233.4 373 41.3
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 5.1e-59 232.6 404 37.9
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 1.1e-58 231.5 374 40.9
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.1e-58 231.5 373 39.1
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 5.7e-58 229.2 373 38.3
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 9.7e-58 228.4 363 38.6
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 3.7e-57 226.5 374 39.0
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 6.3e-57 225.7 370 37.3
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 6.9e-56 222.2 387 38.0
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.2e-55 221.5 373 38.6
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 4.5e-55 219.5 428 34.8
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 5.0e-54 216.1 424 36.3
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 1.9e-53 214.2 394 35.3
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 5.5e-53 212.6 373 36.7
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 7.2e-53 212.2 432 35.6
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 4.6e-52 209.5 370 35.4
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 3.9e-51 206.5 375 38.4
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 1.1e-50 204.9 346 39.3
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 1.5e-50 204.5 420 35.5
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.5e-50 204.5 185 63.2
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 1.5e-50 204.5 373 34.6
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 2.6e-50 203.8 387 35.1
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 3.7e-49 199.9 266 44.4
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 6.3e-49 199.1 373 34.6
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 5.9e-47 192.6 419 34.4
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 7.7e-47 192.2 402 35.6
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 2.5e-45 187.2 372 34.4
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 3.0e-43 180.3 399 34.3
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 4.4e-42 176.4 284 40.5
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 1.7e-41 174.5 404 32.9
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 2.8e-41 173.7 424 32.1
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.8e-40 171.0 407 32.7
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.6e-39 167.9 376 33.8
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 5.9e-39 166.0 228 44.3
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.1e-36 157.5 188 47.9
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 8.8e-35 152.1 387 29.7
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 4.8e-33 146.4 192 41.7
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.8e-32 144.4 391 30.4
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-31 141.7 371 30.7
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 2.2e-30 137.5 201 39.8
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 2.3e-27 127.5 234 34.2
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 6.8e-27 125.9 169 42.0
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 2.4e-24 117.5 143 47.6
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 2.4e-24 117.5 143 47.6
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 1.2e-23 115.2 382 28.3
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 2.7e-23 114.0 161 46.0
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 2.7e-23 114.0 161 46.0
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 3.8e-22 110.2 376 27.1
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 3.8e-22 110.2 185 36.2
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 2.8e-20 104.0 60 88.3
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 4.1e-16 90.1 137 40.1
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 1.1e-13 82.0 100 45.0
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 4.7e-12 76.6 100 42.0
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 3.4e-10 70.5 181 33.1
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.1e-08 65.5 87 46.0


User provided reference genes

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