Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 6.7e-156 553.9 265 100.0
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 8.4e-143 510.4 265 90.6
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.2e-142 508.4 265 90.2
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 4.6e-141 504.6 265 89.8
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.8e-140 502.7 265 90.2
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.8e-135 485.0 265 86.4
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.2e-134 481.9 263 87.1
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.2e-133 479.9 265 85.7
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.3e-129 464.5 249 88.0
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 1.6e-125 453.0 267 80.1
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.2e-106 389.4 265 72.5
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 5.2e-100 368.2 201 86.1
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.6e-96 356.7 309 61.5
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 6.3e-90 334.7 256 65.2
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 8.3e-90 334.3 265 60.4
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 7.0e-89 331.3 265 59.2
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.6e-88 330.1 265 60.8
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 5.9e-88 328.2 265 60.0
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 3.9e-87 325.5 266 60.2
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 3.4e-83 312.4 255 60.0
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.2e-82 309.7 265 57.7
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.9e-81 306.6 254 57.5
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.2e-81 305.8 254 57.1
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.0e-79 300.8 263 55.5
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.3e-78 295.4 265 54.0
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 8.0e-77 291.2 265 53.6
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.4e-76 290.4 255 55.7
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.5e-75 287.0 264 54.5
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.0e-75 286.6 266 53.8
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.0e-75 286.6 270 53.3
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.7e-74 283.5 271 50.2
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 3.7e-74 282.3 266 53.8
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 8.3e-74 281.2 272 53.7
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.9e-73 280.0 265 53.2
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 4.1e-73 278.9 255 56.1
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 5.4e-73 278.5 269 53.9
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 7.0e-73 278.1 273 54.2
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 9.2e-73 277.7 269 51.7
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 9.2e-73 277.7 267 52.4
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.6e-72 276.9 268 52.6
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.1e-72 276.6 262 50.0
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 3.5e-72 275.8 265 52.1
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.9e-70 270.0 267 53.9
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.6e-70 268.5 265 51.3
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 9.5e-70 267.7 267 53.2
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 9.5e-70 267.7 265 50.2
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 9.5e-70 267.7 266 51.5
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.6e-69 265.8 253 53.0
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 8.1e-69 264.6 264 49.6
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 3.1e-68 262.7 225 55.1
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 8.9e-68 261.2 264 48.9
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 2.0e-67 260.0 257 50.6
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 2.6e-67 259.6 251 52.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 3.4e-67 259.2 263 50.2
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 7.5e-67 258.1 269 49.1
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 8.3e-66 254.6 261 52.1
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.1e-65 254.2 255 51.8
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 3.2e-65 252.7 267 51.7
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 4.1e-65 252.3 268 48.5
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.4e-65 251.9 232 53.4
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.2e-64 250.8 267 48.3
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.6e-64 250.4 267 51.7
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 2.7e-64 249.6 268 46.3
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 3.5e-64 249.2 237 50.6
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 2.3e-63 246.5 269 47.6
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.9e-63 245.7 264 47.7
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.9e-63 245.7 251 48.2
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 5.1e-63 245.4 268 49.6
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 5.1e-63 245.4 192 61.5
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 5.1e-63 245.4 219 53.0
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.5e-62 243.0 268 50.0
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 3.3e-62 242.7 265 47.2
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 4.3e-62 242.3 265 46.0
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 4.3e-62 242.3 265 46.0
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 4.3e-62 242.3 265 46.0
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 5.6e-62 241.9 273 47.3
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 5.6e-62 241.9 255 50.6
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 7.3e-62 241.5 270 45.6
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 9.5e-62 241.1 235 50.2
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 9.5e-62 241.1 266 47.7
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 2.8e-61 239.6 266 46.2
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.8e-61 239.6 251 49.8
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.8e-61 239.6 265 49.4
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 2.8e-61 239.6 240 49.6
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 3.6e-61 239.2 251 50.2
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 4.7e-61 238.8 268 49.3
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 8.1e-61 238.0 267 46.1
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 1.1e-60 237.7 255 47.1
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.4e-60 237.3 256 49.2
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.8e-60 236.9 270 46.7
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.1e-60 236.1 199 56.8
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 4.0e-60 235.7 229 50.2
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 4.0e-60 235.7 265 47.9
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 5.2e-60 235.3 267 48.3
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 6.8e-60 235.0 211 55.9
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.2e-59 234.2 266 45.5
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 2.0e-59 233.4 271 48.3
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.0e-59 233.4 214 53.7
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.0e-59 233.4 256 47.3
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 4.4e-59 232.3 252 48.4
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 5.8e-59 231.9 274 45.3
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 7.6e-59 231.5 253 46.2
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 9.9e-59 231.1 245 48.2
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.7e-58 230.3 287 43.2
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 8.4e-58 228.0 253 47.8
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.9e-57 226.9 248 47.2
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 3.2e-57 226.1 262 45.0
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 4.2e-57 225.7 212 50.5
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 7.1e-57 224.9 260 46.5
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 9.2e-57 224.6 274 45.6
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.2e-56 224.2 273 45.4
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.6e-56 223.8 268 43.3
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.6e-56 223.8 268 43.3
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 2.1e-56 223.4 253 44.3
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 6.0e-56 221.9 267 43.4
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 6.0e-56 221.9 267 43.4
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 7.8e-56 221.5 314 42.4
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 7.8e-56 221.5 270 45.6
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 7.8e-56 221.5 237 48.9
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.3e-55 219.9 194 61.3
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 2.5e-54 216.5 219 47.0
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.3e-54 216.1 214 49.5
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.6e-53 213.8 287 41.8
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 2.1e-53 213.4 211 48.8
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 1.4e-52 210.7 269 43.1
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.0e-52 209.1 217 48.8
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 2.6e-51 206.5 288 41.0
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.6e-51 206.5 265 45.7
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.4e-51 205.7 228 47.8
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 7.6e-51 204.9 270 44.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.2e-50 203.4 265 45.3
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 4.2e-49 199.1 265 43.8
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 4.2e-49 199.1 214 45.8
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 9.3e-49 198.0 224 46.9
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 1.2e-48 197.6 274 43.8
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-48 197.2 238 45.0
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 3.5e-48 196.1 273 44.0
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 2.3e-47 193.4 272 39.0
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 3.9e-47 192.6 253 43.5
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 8.7e-47 191.4 298 38.3
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 9.6e-46 188.0 179 52.5
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 8.1e-45 184.9 273 39.9
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 2.4e-44 183.3 178 50.0
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 4.0e-44 182.6 171 52.6
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 6.4e-42 175.3 87 92.0
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 7.1e-41 171.8 284 35.6
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 1.2e-40 171.0 159 49.1
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.7e-40 169.9 85 90.6
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 5.1e-39 165.6 221 40.7
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.6e-37 160.6 235 39.6
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.1e-37 160.2 265 38.5
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 3.7e-37 159.5 239 40.2
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 3.7e-37 159.5 242 40.1
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 4.8e-37 159.1 302 32.5
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 4.0e-36 156.0 153 50.3
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 9.0e-36 154.8 189 44.4
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.5e-35 154.1 222 37.4
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 6.5e-34 148.7 166 44.6
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.1e-32 143.7 318 29.6
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.3e-31 141.0 227 39.6
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 3.0e-31 139.8 139 53.2
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 5.1e-31 139.0 131 52.7
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.9e-30 137.1 240 37.5
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.6e-29 134.0 223 35.0
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.8e-29 133.3 179 41.9
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.4e-28 130.2 127 53.5
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 3.4e-27 126.3 254 38.2
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 5.0e-26 122.5 228 34.2
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 3.5e-24 116.3 265 29.8
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 5.1e-23 112.5 100 55.0
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 6.7e-23 112.1 264 29.9
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 2.5e-22 110.2 173 38.7
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.3e-22 109.8 81 63.0
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 4.1e-20 102.8 265 29.8
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 7.9e-16 88.6 85 48.2
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 2.3e-15 87.0 94 42.6
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-14 83.2 148 34.5
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 7.4e-14 82.0 78 55.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 8.2e-13 78.6 110 41.8
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 1.2e-11 74.7 47 76.6
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 1.9e-09 67.4 86 41.9
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 2.7e-08 63.5 43 58.1
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.1e-07 59.3 45 60.0
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 9.7e-06 55.1 36 66.7


User provided reference genes

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