Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G639.15 Capsicum annuum HOM05D035774 ORTHO05D115614 2.0e-117 426.0 255 100.0
CAN.G1119.13 Capsicum annuum HOM05D000336 ORTHO05D000593 5.1e-44 182.2 122 75.4
CAN.G639.12 Capsicum annuum HOM05D035774 ORTHO05D115243 1.0e-28 131.3 79 82.3
Nitab4.5_0000383g0340 Nicotiana tabacum HOM05D000336 ORTHO05D000593 9.6e-27 124.8 129 54.3
Nitab4.5_0001208g0040 Nicotiana tabacum HOM05D000336 ORTHO05D000593 5.3e-25 119.0 129 52.7
CAN.G639.9 Capsicum annuum HOM05D035774 ORTHO05D115722 2.9e-23 113.2 58 100.0
CAN.G1448.1 Capsicum annuum HOM05D012514 ORTHO05D000593 2.1e-21 107.1 120 53.3
CAN.G162.22 Capsicum annuum HOM05D000336 ORTHO05D000593 6.0e-21 105.5 117 49.6
Nitab4.5_0005440g0060 Nicotiana tabacum HOM05D000336 ORTHO05D000593 7.9e-21 105.1 119 51.3
Solyc12g014170.2 Solanum lycopersicum HOM05D000336 ORTHO05D000593 3.0e-20 103.2 117 51.3
PGSC0003DMG401012433 Solanum tuberosum HOM05D000336 ORTHO05D000593 6.7e-20 102.1 124 49.2
Peaxi162Scf00027g00057 Petunia axillaris HOM05D000336 ORTHO05D000593 8.7e-20 101.7 101 56.4
Peaxi162Scf01503g00017 Petunia axillaris HOM05D000336 ORTHO05D000593 2.5e-19 100.1 117 53.0
PGSC0003DMG400015378 Solanum tuberosum HOM05D000336 ORTHO05D000593 5.6e-19 99.0 117 51.3
Sopen12g005960 Solanum pennellii HOM05D000336 ORTHO05D000593 2.1e-18 97.1 117 50.4
Solyc07g062660.4 Solanum lycopersicum HOM05D000336 ORTHO05D000593 4.8e-18 95.9 129 45.0
Sopen07g030890 Solanum pennellii HOM05D000336 ORTHO05D000593 4.8e-18 95.9 129 45.0
Peaxi162Scf00069g02023 Petunia axillaris HOM05D000336 ORTHO05D000593 6.9e-17 92.0 111 50.5
CAN.G1123.1 Capsicum annuum HOM05D000336 ORTHO05D000593 2.9e-15 86.7 118 46.6
HanXRQChr15g0494691 Helianthus annuus HOM05D000336 ORTHO05D000593 3.2e-14 83.2 116 44.0
CSS0050350 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 5.5e-14 82.4 105 49.5
Oeu051113.2 Olea europaea HOM05D000336 ORTHO05D000593 2.1e-13 80.5 126 43.7
CSS0015418 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 4.6e-13 79.3 98 49.0
Dinv14967 Davidia involucrata HOM05D000336 ORTHO05D000593 2.3e-12 77.0 103 48.5
HanXRQChr11g0331341 Helianthus annuus HOM05D000336 ORTHO05D000593 2.3e-12 77.0 118 38.1
Lsat_1_v5_gn_7_103240 Lactuca sativa HOM05D000336 ORTHO05D000593 3.0e-12 76.6 118 39.0
Actinidia31605 Actinidia chinensis HOM05D000336 ORTHO05D000593 3.9e-12 76.3 97 48.5
Actinidia18790 Actinidia chinensis HOM05D000336 ORTHO05D000593 6.7e-12 75.5 102 50.0
Migut.H01976 Erythranthe guttata HOM05D000336 ORTHO05D000593 1.1e-11 74.7 70 54.3
MSTRG.12880 Avicennia marina HOM05D000336 ORTHO05D000593 1.5e-11 74.3 68 55.9
Lsat_1_v5_gn_9_99621 Lactuca sativa HOM05D000336 ORTHO05D000593 1.5e-11 74.3 75 48.0
Actinidia35222 Actinidia chinensis HOM05D000336 ORTHO05D000593 3.3e-11 73.2 97 49.5
vmacro09503 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 7.4e-11 72.0 64 60.9
Dinv18345 Davidia involucrata HOM05D000336 ORTHO05D000593 9.6e-11 71.6 97 47.4
Rhsim04G0024500 Rhododendron simsii HOM05D000336 ORTHO05D000593 1.6e-10 70.9 64 54.7
unitig_0.g2271 Utricularia gibba HOM05D000336 ORTHO05D000593 2.1e-10 70.5 74 51.4
unitig_52.g17398 Utricularia gibba HOM05D000336 ORTHO05D000593 8.2e-10 68.6 62 53.2
Rhsim06G0205200 Rhododendron simsii HOM05D000336 ORTHO05D000593 1.1e-09 68.2 90 46.7
Cc02_g32330 Coffea canephora HOM05D000336 ORTHO05D000593 1.4e-09 67.8 47 66.0
Cc05_g11400 Coffea canephora HOM05D000336 ORTHO05D000593 1.4e-09 67.8 47 66.0
arahy.Tifrunner.gnm1.ann1.0AS58E Arachis hypogaea HOM05D000336 ORTHO05D000593 1.8e-09 67.4 60 58.3
arahy.Tifrunner.gnm1.ann1.QS2L7N Arachis hypogaea HOM05D000336 ORTHO05D000593 1.8e-09 67.4 60 58.3
HanXRQChr17g0548891 Helianthus annuus HOM05D000336 ORTHO05D000593 1.8e-09 67.4 63 54.0
vmacro11909 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 1.8e-09 67.4 58 58.6
ECA236G0678 Erigeron canadensis HOM05D000336 ORTHO05D000593 2.4e-09 67.0 124 35.5
Lj1P833T44 Lonicera japonica HOM05D000336 ORTHO05D000593 2.4e-09 67.0 51 66.7
SGA_v2.0_scaffold130G34319 Striga asiatica HOM05D000336 ORTHO05D000593 2.4e-09 67.0 61 55.7
DCAR_013143 Daucus carota HOM05D000336 ORTHO05D000593 3.1e-09 66.6 65 53.8
AUR62019541 Chenopodium quinoa HOM05D000336 ORTHO05D000593 4.1e-09 66.2 66 59.1
MSTRG.14953 Avicennia marina HOM05D000336 ORTHO05D000593 5.3e-09 65.9 57 56.1
Duzib268G0411 Durio zibethinus HOM05D000336 ORTHO05D000593 6.9e-09 65.5 84 46.4
SalBow7G0624 Salvia bowleyana HOM05D000336 ORTHO05D000593 6.9e-09 65.5 63 54.0
EL10Ac4g08319 Beta vulgaris HOM05D000336 ORTHO05D000593 9.0e-09 65.1 65 53.8
AUR62036096 Chenopodium quinoa HOM05D000336 ORTHO05D000593 1.2e-08 64.7 67 56.7
MELO3C014351.2 Cucumis melo HOM05D000336 ORTHO05D000593 1.5e-08 64.3 94 39.4
CsaV3_6G037610 Cucumis sativus L. HOM05D000336 ORTHO05D000593 1.5e-08 64.3 94 39.4
Gohir.D01G044300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.5e-08 64.3 109 37.6
Gorai.002G063500 Gossypium raimondii HOM05D000336 ORTHO05D000593 1.5e-08 64.3 109 37.6
DCAR_021014 Daucus carota HOM05D000336 ORTHO05D000593 2.0e-08 63.9 56 55.4
ClCG09G011350 Citrullus lanatus HOM05D000336 ORTHO05D000593 2.6e-08 63.5 86 43.0
Ah.04g164370 Amaranthus hybridus HOM05D000336 ORTHO05D000593 3.4e-08 63.2 65 53.8
Potri.019G090700 Populus trichocarpa HOM05D000336 ORTHO05D000593 3.4e-08 63.2 68 52.9
Thecc.07G104700 Theobroma cacao HOM05D000336 ORTHO05D000593 3.4e-08 63.2 84 42.9
TAR627G0342 Trochodendron aralioides HOM05D000336 ORTHO05D000593 3.4e-08 63.2 101 42.6
Migut.M00746 Erythranthe guttata HOM05D000336 ORTHO05D000593 4.5e-08 62.8 56 53.6
Sed0017505 Sechium edule HOM05D000336 ORTHO05D000593 4.5e-08 62.8 49 63.3
ClCG02G017980 Citrullus lanatus HOM05D000336 ORTHO05D000593 1.0e-07 61.6 65 56.9
ECA240G2711 Erigeron canadensis HOM05D000336 ORTHO05D000593 1.0e-07 61.6 46 63.0
GSVIVG01020670001 Vitis vinifera HOM05D000336 ORTHO05D000593 1.0e-07 61.6 100 38.0
Dinv03921 Davidia involucrata HOM05D000336 ORTHO05D000593 1.3e-07 61.2 68 52.9
Gohir.A01G057900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.3e-07 61.2 109 39.4
Oeu025339.3 Olea europaea HOM05D000336 ORTHO05D000593 1.3e-07 61.2 46 60.9
Phvul.005G096700 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 1.3e-07 61.2 66 56.1
Duzib170G0900 Durio zibethinus HOM05D000336 ORTHO05D000593 1.7e-07 60.8 90 43.3
Potri.013G118900 Populus trichocarpa HOM05D000336 ORTHO05D000593 1.7e-07 60.8 68 51.5
Sabra19G0104300 Salix brachista HOM05D000336 ORTHO05D000593 1.7e-07 60.8 63 52.4
Hund02249 Selenicereus undatus HOM05D000336 ORTHO05D000593 1.7e-07 60.8 57 54.4
VMungo1127G0580 Vigna mungo HOM05D000336 ORTHO05D000593 1.7e-07 60.8 65 50.8
CAN.G639.14 Capsicum annuum HOM05D012514 ORTHO05D114937 2.9e-07 60.1 35 80.0
CDE10G0923 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 2.9e-07 60.1 48 58.3
Glyma.13G292200 Glycine max HOM05D000336 ORTHO05D000593 2.9e-07 60.1 55 58.2
Sabra13G0100300 Salix brachista HOM05D000336 ORTHO05D000593 2.9e-07 60.1 68 51.5
Lj8P151T33 Lonicera japonica HOM05D000336 ORTHO05D000593 3.8e-07 59.7 52 59.6
Manes.13G138700 Manihot esculenta HOM05D000336 ORTHO05D000593 3.8e-07 59.7 68 51.5
TWI14G0284 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 3.8e-07 59.7 115 39.1
Dinv15466 Davidia involucrata HOM05D000336 ORTHO05D000593 5.0e-07 59.3 68 51.5
Gohir.D04G041900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 5.0e-07 59.3 75 52.0
SHI04492 Sapria himalayana HOM05D000336 ORTHO05D000593 5.0e-07 59.3 68 50.0
Gohir.A05G373600 Gossypium hirsutum HOM05D000336 ORTHO05D000593 6.5e-07 58.9 75 50.7
Oeu061344.1 Olea europaea HOM05D000336 ORTHO05D000593 6.5e-07 58.9 79 44.3
PGSC0003DMG400010560 Solanum tuberosum HOM05D000336 ORTHO05D000593 6.5e-07 58.9 60 53.3
Gohir.D04G042000 Gossypium hirsutum HOM05D000336 ORTHO05D000593 8.4e-07 58.5 75 50.7
Gohir.D05G344700 Gossypium hirsutum HOM05D000336 ORTHO05D000593 8.4e-07 58.5 84 41.7
Gorai.012G047200 Gossypium raimondii HOM05D000336 ORTHO05D000593 8.4e-07 58.5 75 50.7
Psat5g275480 Pisum sativum HOM05D000336 ORTHO05D000593 8.4e-07 58.5 114 39.5
Solyc10g008070.4 Solanum lycopersicum HOM05D000336 ORTHO05D000593 8.4e-07 58.5 60 51.7
Sopen10g003940 Solanum pennellii HOM05D000336 ORTHO05D000593 8.4e-07 58.5 60 51.7
vmacro09231 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 8.4e-07 58.5 65 50.8
MELO3C019754.2 Cucumis melo HOM05D000336 ORTHO05D000593 1.1e-06 58.2 55 54.5
Gohir.A05G373800 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.1e-06 58.2 65 53.8
Gohir.D04G041800 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.1e-06 58.2 65 53.8
Gorai.012G047100 Gossypium raimondii HOM05D000336 ORTHO05D000593 1.1e-06 58.2 65 53.8
Psat7g164840 Pisum sativum HOM05D000336 ORTHO05D000593 1.1e-06 58.2 99 36.4
QL08p041317 Quercus lobata HOM05D000336 ORTHO05D000593 1.1e-06 58.2 55 56.4
Cpa.g.sc209.24 Carica papaya HOM05D000336 ORTHO05D000593 1.4e-06 57.8 65 53.8
CiPaw.04G131400 Carya illinoinensis HOM05D000336 ORTHO05D000593 1.4e-06 57.8 65 50.8
Gorai.012G047300 Gossypium raimondii HOM05D000336 ORTHO05D000593 1.4e-06 57.8 75 49.3
MD17G1233300 Malus domestica HOM05D000336 ORTHO05D000593 1.4e-06 57.8 102 37.3
Manes.12G091200 Manihot esculenta HOM05D000336 ORTHO05D000593 1.4e-06 57.8 68 50.0
TPR.G30388 Trifolium pratense HOM05D000336 ORTHO05D000593 1.4e-06 57.8 109 36.7
Ah.06g185150 Amaranthus hybridus HOM05D000336 ORTHO05D000593 1.9e-06 57.4 88 37.5
CAN.G782.9 Capsicum annuum HOM05D000336 ORTHO05D000593 1.9e-06 57.4 60 50.0
CiPaw.03G185600 Carya illinoinensis HOM05D000336 ORTHO05D000593 1.9e-06 57.4 77 45.5
Rhsim04G0073400 Rhododendron simsii HOM05D000336 ORTHO05D000593 1.9e-06 57.4 65 49.2
MSTRG.6800 Avicennia marina HOM05D000336 ORTHO05D000593 2.5e-06 57.0 58 55.2
CSS0023151 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 2.5e-06 57.0 70 48.6
CDE10G0328 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 2.5e-06 57.0 48 54.2
CsaV3_6G018740 Cucumis sativus L. HOM05D000336 ORTHO05D000593 2.5e-06 57.0 55 54.5
Glyma.06G284000 Glycine max HOM05D000336 ORTHO05D000593 2.5e-06 57.0 65 49.2
Gohir.A05G373700 Gossypium hirsutum HOM05D000336 ORTHO05D000593 2.5e-06 57.0 75 49.3
MD09G1240500 Malus domestica HOM05D000336 ORTHO05D000593 2.5e-06 57.0 55 52.7
Aqoxy1G02188 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 3.2e-06 56.6 82 35.4
Sed0001430 Sechium edule HOM05D000336 ORTHO05D000593 3.2e-06 56.6 75 41.3
Sed0023305 Sechium edule HOM05D000336 ORTHO05D000593 3.2e-06 56.6 43 62.8
TWI23G0965 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 3.2e-06 56.6 116 37.9
Ciclev10014432m.g Citrus clementina HOM05D000336 ORTHO05D000593 4.2e-06 56.2 118 40.7
Glyma.12G122100 Glycine max HOM05D000336 ORTHO05D000593 4.2e-06 56.2 65 47.7
Gorai.009G372700 Gossypium raimondii HOM05D000336 ORTHO05D000593 4.2e-06 56.2 84 41.7
PGR042G0683 Punica granatum HOM05D000336 ORTHO05D000593 4.2e-06 56.2 55 54.5
TPR.G11516 Trifolium pratense HOM05D000336 ORTHO05D000593 4.2e-06 56.2 54 57.4
TAR629G0035 Trochodendron aralioides HOM05D000336 ORTHO05D000593 4.2e-06 56.2 52 51.9
VMungo1080G0130 Vigna mungo HOM05D000336 ORTHO05D000593 4.2e-06 56.2 55 56.4
Zm00001eb204370 Zea mays HOM05D000336 ORTHO05D000593 4.2e-06 56.2 105 37.1
Phvul.011G135800 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 5.5e-06 55.8 65 49.2
Cfa014711 Carpinus fangiana HOM05D000336 ORTHO05D000593 7.2e-06 55.5 50 56.0
Haze_13341 Corylus avellana HOM05D000336 ORTHO05D000593 7.2e-06 55.5 50 56.0
Lalb_Chr14g0367361 Lupinus albus HOM05D000336 ORTHO05D000593 7.2e-06 55.5 54 55.6
Actinidia30445 Actinidia chinensis HOM05D000336 ORTHO05D000593 9.3e-06 55.1 69 47.8
Ca_01467_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 9.3e-06 55.1 54 53.7
Hma1.2p1_0002F.1_g002640 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 9.3e-06 55.1 70 47.1
Hma1.2p1_0002F.1_g002650 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 9.3e-06 55.1 70 47.1
Hma1.2p1_0178F.1_g079043 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 9.3e-06 55.1 70 47.1
Medtr2g091130 Medicago truncatula HOM05D000336 ORTHO05D000593 9.3e-06 55.1 57 52.6
Medtr2g091135 Medicago truncatula HOM05D000336 ORTHO05D000593 9.3e-06 55.1 57 52.6
Peaxi162Scf00241g00916 Petunia axillaris HOM05D000336 ORTHO05D000593 9.3e-06 55.1 60 46.7


User provided reference genes

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