Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G635.10 Capsicum annuum HOM05D001477 ORTHO05D001182 2.1e-129 465.7 229 100.0
CAN.G825.31 Capsicum annuum HOM05D001477 ORTHO05D001182 5.9e-84 314.7 221 72.4
CAN.G635.8 Capsicum annuum HOM05D001477 ORTHO05D001182 3.2e-82 308.9 220 71.8
CAN.G635.11 Capsicum annuum HOM05D001477 ORTHO05D001182 3.0e-80 302.4 199 77.4
CAN.G635.4 Capsicum annuum HOM05D001477 ORTHO05D001182 8.8e-72 274.2 221 62.9
CAN.G635.12 Capsicum annuum HOM05D001477 ORTHO05D001182 7.4e-71 271.2 219 63.9
CAN.G635.5 Capsicum annuum HOM05D001477 ORTHO05D001182 1.4e-69 266.9 217 63.1
Nitab4.5_0009241g0030 Nicotiana tabacum HOM05D001477 ORTHO05D001182 9.4e-66 254.2 206 66.0
CAN.G635.9 Capsicum annuum HOM05D001477 ORTHO05D001182 2.5e-50 203.0 231 51.5
CAN.G1349.10 Capsicum annuum HOM05D001477 ORTHO05D001182 9.2e-45 184.5 221 49.8
Peaxi162Scf00152g10132 Petunia axillaris HOM05D001477 ORTHO05D001182 1.0e-43 181.0 228 51.3
Peaxi162Scf00548g00535 Petunia axillaris HOM05D001477 ORTHO05D001182 8.6e-43 177.9 224 48.2
Peaxi162Scf00421g00326 Petunia axillaris HOM05D001477 ORTHO05D001182 3.3e-42 176.0 224 46.9
CAN.G1373.24 Capsicum annuum HOM05D001477 ORTHO05D001182 6.8e-40 168.3 221 47.1
PGSC0003DMG400028156 Solanum tuberosum HOM05D001477 ORTHO05D001182 6.4e-38 161.8 239 43.1
CAN.G1124.4 Capsicum annuum HOM05D001477 ORTHO05D001182 3.5e-36 156.0 188 48.9
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 3.0e-35 152.9 214 44.4
PGSC0003DMG400009532 Solanum tuberosum HOM05D001477 ORTHO05D001182 6.6e-35 151.8 221 43.9
CAN.G1155.16 Capsicum annuum HOM05D001477 ORTHO05D001182 4.0e-32 142.5 217 45.6
CAN.G635.20 Capsicum annuum HOM05D001477 ORTHO05D001182 1.3e-30 137.5 180 47.8
CAN.G723.10 Capsicum annuum HOM05D001477 ORTHO05D028500 6.4e-30 135.2 211 44.1
Peaxi162Scf00207g01132 Petunia axillaris HOM05D001477 ORTHO05D001182 1.3e-27 127.5 226 39.4
CAN.G635.7 Capsicum annuum HOM05D001477 ORTHO05D001182 8.6e-27 124.8 93 67.7
Nitab4.5_0000255g0120 Nicotiana tabacum HOM05D001477 ORTHO05D001182 1.2e-25 120.9 91 65.9
Cfa015667 Carpinus fangiana HOM05D001477 ORTHO05D001182 3.7e-22 109.4 220 35.9
CAN.G635.21 Capsicum annuum HOM05D001477 ORTHO05D001182 1.4e-21 107.5 117 51.3
Haze_00867 Corylus avellana HOM05D001477 ORTHO05D001182 4.6e-20 102.4 220 34.1
Peaxi162Scf00840g00015 Petunia axillaris HOM05D001477 ORTHO05D001182 1.7e-19 100.5 184 38.6
COL.COLO4_30418 Corchorus olitorius HOM05D001477 ORTHO05D001182 7.3e-18 95.1 214 33.2
Manes.07G068500 Manihot esculenta HOM05D001477 ORTHO05D001182 6.2e-17 92.0 223 29.1
Peaxi162Scf00202g02030 Petunia axillaris HOM05D001477 ORTHO05D001182 8.1e-17 91.7 87 62.1
Atru.chr6.1369 Acer truncatum HOM05D001477 ORTHO05D001182 1.4e-16 90.9 191 34.0
Cfa003613 Carpinus fangiana HOM05D001477 ORTHO05D001182 1.4e-16 90.9 226 31.4
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 1.4e-16 90.9 226 32.3
Sed0010878 Sechium edule HOM05D001477 ORTHO05D001182 1.4e-16 90.9 191 31.4
Potri.001G395000 Populus trichocarpa HOM05D001477 ORTHO05D001182 1.8e-16 90.5 213 31.5
QL05p018582 Quercus lobata HOM05D001477 ORTHO05D001182 2.4e-16 90.1 223 31.4
QL93p1866_0198 Quercus lobata HOM05D001477 ORTHO05D001182 2.4e-16 90.1 223 31.4
QL01p017794 Quercus lobata HOM05D001477 ORTHO05D001182 6.8e-16 88.6 220 30.5
Rhsim02G0017300 Rhododendron simsii HOM05D001477 ORTHO05D001182 1.2e-15 87.8 191 32.5
Atru.chr1.2844 Acer truncatum HOM05D001477 ORTHO05D001182 1.5e-15 87.4 221 31.2
Ciclev10025305m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.5e-15 87.4 225 31.1
QL08p037410 Quercus lobata HOM05D001477 ORTHO05D001182 1.5e-15 87.4 211 30.8
QL05p016344 Quercus lobata HOM05D001477 ORTHO05D001182 2.0e-15 87.0 226 31.4
QL05p053661 Quercus lobata HOM05D001477 ORTHO05D001182 3.4e-15 86.3 193 30.6
CAN.G1668.1 Capsicum annuum HOM05D001477 ORTHO05D001182 5.8e-15 85.5 220 30.0
Haze_18985 Corylus avellana HOM05D001477 ORTHO05D001182 5.8e-15 85.5 226 31.0
Solyc03g121290.4 Solanum lycopersicum HOM05D001477 ORTHO05D001182 5.8e-15 85.5 220 30.9
Sopen03g040100 Solanum pennellii HOM05D001477 ORTHO05D001182 9.9e-15 84.7 220 29.5
Haze_03787 Corylus avellana HOM05D001477 ORTHO05D001182 1.3e-14 84.3 214 31.3
Ciclev10000694m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.7e-14 84.0 222 30.2
Hma1.2p1_0978F.1_g243340 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 1.7e-14 84.0 193 34.2
ClCG07G013540 Citrullus lanatus HOM05D001477 ORTHO05D001182 2.9e-14 83.2 220 29.1
AUR62015215 Chenopodium quinoa HOM05D001477 ORTHO05D001182 4.9e-14 82.4 191 29.3
Haze_18899 Corylus avellana HOM05D001477 ORTHO05D001182 4.9e-14 82.4 212 31.1
CiPaw.01G227900 Carya illinoinensis HOM05D001477 ORTHO05D001182 1.1e-13 81.3 235 30.2
Ciclev10025841m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.9e-13 80.5 167 31.1
Cfa020687 Carpinus fangiana HOM05D001477 ORTHO05D001182 2.4e-13 80.1 186 32.8
Haze_18944 Corylus avellana HOM05D001477 ORTHO05D001182 2.4e-13 80.1 225 30.2
CANSAT64G2494 Cannabis sativa HOM05D000051 ORTHO05D001182 4.2e-13 79.3 216 28.2
Cpa.g.sc116.90 Carica papaya HOM05D001477 ORTHO05D001182 7.1e-13 78.6 224 33.5
Ciclev10033697m.g Citrus clementina HOM05D001477 ORTHO05D001182 7.1e-13 78.6 174 29.9
Manes.09G003200 Manihot esculenta HOM05D001477 ORTHO05D001182 1.2e-12 77.8 223 25.6
Rhsim08G0230500 Rhododendron simsii HOM05D001477 ORTHO05D001182 1.2e-12 77.8 220 28.6
CsaV3_3G044110 Cucumis sativus L. HOM05D001477 ORTHO05D001182 1.6e-12 77.4 220 30.0
PGSC0003DMG400002600 Solanum tuberosum HOM05D001477 ORTHO05D001182 1.6e-12 77.4 220 29.1
Hma1.2p1_0388F.1_g142450 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 2.1e-12 77.0 179 33.5
Ciclev10027565m.g Citrus clementina HOM05D001477 ORTHO05D001182 3.5e-12 76.3 192 32.8
QL05p010063 Quercus lobata HOM05D001477 ORTHO05D001182 4.6e-12 75.9 130 31.5
Cfa020769 Carpinus fangiana HOM05D001477 ORTHO05D001182 6.0e-12 75.5 179 30.7
Peaxi162Scf00548g00422 Petunia axillaris HOM05D001396 ORTHO05D000493 6.0e-12 75.5 141 33.3
CAN.G1349.9 Capsicum annuum HOM05D001477 ORTHO05D001182 7.8e-12 75.1 66 56.1
Ah.16g101830 Amaranthus hybridus HOM05D000001 ORTHO05D001705 1.0e-11 74.7 227 30.0
EL10Ac2g04568 Beta vulgaris HOM05D001477 ORTHO05D001182 1.0e-11 74.7 225 26.7
Nitab4.5_0003218g0100 Nicotiana tabacum HOM05D012574 ORTHO05D001182 1.0e-11 74.7 232 26.3
QL02p094064 Quercus lobata HOM05D001477 ORTHO05D001182 1.0e-11 74.7 212 27.8
QL05p032382 Quercus lobata HOM05D001477 ORTHO05D001182 1.0e-11 74.7 220 25.9
QL05p033764 Quercus lobata HOM05D001477 ORTHO05D001182 1.0e-11 74.7 220 25.9
Ciclev10027487m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.3e-11 74.3 177 28.8
CAN.G638.22 Capsicum annuum HOM05D001477 ORTHO05D001182 1.7e-11 73.9 202 29.2
MELO3C013024.2 Cucumis melo HOM05D001477 ORTHO05D001182 1.7e-11 73.9 188 31.4
Manes.11G030101 Manihot esculenta HOM05D001477 ORTHO05D001182 2.3e-11 73.6 223 29.6
Nitab4.5_0011843g0020 Nicotiana tabacum HOM05D006683 ORTHO05D008629 3.9e-11 72.8 230 30.4
AUR62023879 Chenopodium quinoa HOM05D001477 ORTHO05D001182 6.6e-11 72.0 191 28.8
Haze_19062 Corylus avellana HOM05D001477 ORTHO05D001182 1.1e-10 71.2 177 29.4
Dinv40414 Davidia involucrata HOM05D001477 ORTHO05D001182 1.1e-10 71.2 210 28.1
CAN.G500.84 Capsicum annuum HOM05D006683 ORTHO05D008629 1.9e-10 70.5 233 27.0
CAN.G500.88 Capsicum annuum HOM05D006683 ORTHO05D008629 1.9e-10 70.5 233 27.0
PGSC0003DMG400042991 Solanum tuberosum HOM05D019526 ORTHO05D020903 2.5e-10 70.1 234 23.5
AUR62022291 Chenopodium quinoa HOM05D001477 ORTHO05D001182 3.3e-10 69.7 191 28.8
Ciclev10025281m.g Citrus clementina HOM05D001477 ORTHO05D001182 3.3e-10 69.7 225 28.0
Actinidia32125 Actinidia chinensis HOM05D000617 ORTHO05D000229 4.3e-10 69.3 223 27.8
Actinidia18763 Actinidia chinensis HOM05D000051 ORTHO05D000015 7.3e-10 68.6 172 31.4
COL.COLO4_12879 Corchorus olitorius HOM05D001477 ORTHO05D001182 7.3e-10 68.6 219 29.7
AUR62023317 Chenopodium quinoa HOM05D001477 ORTHO05D001182 9.6e-10 68.2 228 26.3
Ciclev10003331m.g Citrus clementina HOM05D001477 ORTHO05D001182 9.6e-10 68.2 195 29.7
Ciclev10025282m.g Citrus clementina HOM05D001477 ORTHO05D001182 9.6e-10 68.2 227 27.8
CAN.G790.34 Capsicum annuum HOM05D001477 ORTHO05D001182 1.3e-09 67.8 101 43.6
TPR.G24233 Trifolium pratense HOM05D001477 ORTHO05D001182 1.3e-09 67.8 237 29.5
RcHm_v2.0_Chr2g0161931 Rosa chinensis HOM05D006186 ORTHO05D009138 1.6e-09 67.4 222 26.6
TAR627G0813 Trochodendron aralioides HOM05D000421 ORTHO05D001182 1.6e-09 67.4 218 29.4
QL03p032024 Quercus lobata HOM05D001477 ORTHO05D001182 2.1e-09 67.0 219 26.0
PGSC0003DMG400012788 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.1e-09 67.0 217 27.6
PGSC0003DMG400037968 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.8e-09 66.6 173 30.1
CAN.G500.55 Capsicum annuum HOM05D006683 ORTHO05D008629 4.8e-09 65.9 231 27.7
Peaxi162Scf00637g00116 Petunia axillaris HOM05D006683 ORTHO05D008629 4.8e-09 65.9 133 33.8
Lsat_1_v5_gn_4_96261 Lactuca sativa HOM05D000862 ORTHO05D000943 6.2e-09 65.5 225 26.7
CAN.G500.45 Capsicum annuum HOM05D000344 ORTHO05D008629 1.4e-08 64.3 235 27.7
Cpa.g.sc116.79 Carica papaya HOM05D001477 ORTHO05D001182 1.4e-08 64.3 208 28.8
Nitab4.5_0003574g0060 Nicotiana tabacum HOM05D001396 ORTHO05D000493 2.4e-08 63.5 238 26.1
Ah.02g127410 Amaranthus hybridus HOM05D000312 ORTHO05D000221 3.1e-08 63.2 206 26.7
Sabra12G0072600 Salix brachista HOM05D001477 ORTHO05D001182 3.1e-08 63.2 216 27.8
Ciclev10025322m.g Citrus clementina HOM05D001477 ORTHO05D001182 4.0e-08 62.8 192 27.1
Dinv18997 Davidia involucrata HOM05D001396 ORTHO05D000493 4.0e-08 62.8 192 30.7
PGSC0003DMG400035387 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.0e-08 62.8 179 29.1
PGSC0003DMG400043237 Solanum tuberosum HOM05D001477 ORTHO05D001182 4.0e-08 62.8 220 23.6
MSTRG.25133 Avicennia marina HOM05D000312 ORTHO05D000221 5.3e-08 62.4 150 30.7
AUR62018189 Chenopodium quinoa HOM05D007565 ORTHO05D009551 5.3e-08 62.4 114 34.2
Ciclev10025241m.g Citrus clementina HOM05D001477 ORTHO05D001182 5.3e-08 62.4 178 29.2
Nitab4.5_0000941g0150 Nicotiana tabacum HOM05D006683 ORTHO05D008629 5.3e-08 62.4 233 26.6
Sopen09g031780 Solanum pennellii HOM05D006683 ORTHO05D008629 5.3e-08 62.4 153 30.7
AUR62023316 Chenopodium quinoa HOM05D001477 ORTHO05D001182 6.9e-08 62.0 192 26.6
PGSC0003DMG400003795 Solanum tuberosum HOM05D006683 ORTHO05D008629 6.9e-08 62.0 191 27.7
Glyma.15G022500 Glycine max HOM05D000862 ORTHO05D000943 1.2e-07 61.2 224 27.2
Peaxi162Scf00493g00441 Petunia axillaris HOM05D006683 ORTHO05D008629 1.2e-07 61.2 227 26.0
EL10Ac3g05729 Beta vulgaris HOM05D001477 ORTHO05D001182 2.0e-07 60.5 220 28.6
Lalb_Chr17g0341671 Lupinus albus HOM05D000312 ORTHO05D000221 2.0e-07 60.5 144 31.2
Nitab4.5_0000190g0130 Nicotiana tabacum HOM05D001396 ORTHO05D000493 2.0e-07 60.5 240 25.8
Migut.E00519 Erythranthe guttata HOM05D005930 ORTHO05D003423 2.6e-07 60.1 211 23.7
FAN14G1913 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.6e-07 60.1 192 28.6
PSO173G0175 Papaver somniferum HOM05D000051 ORTHO05D000015 2.6e-07 60.1 172 29.7
CAN.G1690.10 Capsicum annuum HOM05D006683 ORTHO05D008629 3.4e-07 59.7 216 27.8
FvH4_6g10000 Fragaria vesca HOM05D000051 ORTHO05D000015 4.4e-07 59.3 192 30.7
Medtr6g006740 Medicago truncatula HOM05D001477 ORTHO05D001182 4.4e-07 59.3 174 31.6
Dinv36032 Davidia involucrata HOM05D000312 ORTHO05D000221 7.6e-07 58.5 129 30.2
Migut.E00523 Erythranthe guttata HOM05D005930 ORTHO05D003423 7.6e-07 58.5 206 28.2
Lsat_1_v5_gn_5_151640 Lactuca sativa HOM05D001396 ORTHO05D000493 7.6e-07 58.5 129 28.7
PGSC0003DMG400003802 Solanum tuberosum HOM05D006683 ORTHO05D008629 7.6e-07 58.5 164 29.9
SGA_v2.0_scaffold37G14878 Striga asiatica HOM05D005930 ORTHO05D003423 7.6e-07 58.5 178 29.8
Atru.chr1.3375 Acer truncatum HOM05D006683 ORTHO05D001182 9.9e-07 58.2 124 32.3
CAN.G1075.43 Capsicum annuum HOM05D001396 ORTHO05D000493 9.9e-07 58.2 142 28.2
DCAR_019502 Daucus carota HOM05D000312 ORTHO05D000221 9.9e-07 58.2 148 27.7
Migut.L00997 Erythranthe guttata HOM05D005930 ORTHO05D003423 9.9e-07 58.2 150 21.3
Nitab4.5_0000306g0260 Nicotiana tabacum HOM05D006683 ORTHO05D008629 9.9e-07 58.2 175 30.3
Potri.013G146800 Populus trichocarpa HOM05D001477 ORTHO05D001182 9.9e-07 58.2 222 28.4
QL03p072973 Quercus lobata HOM05D001477 ORTHO05D001182 9.9e-07 58.2 131 33.6
TPR.G24235 Trifolium pratense HOM05D001477 ORTHO05D001182 9.9e-07 58.2 228 30.7
Actinidia38025 Actinidia chinensis HOM05D000312 ORTHO05D000221 1.3e-06 57.8 144 29.2
Aqoxy3G03380 Aquilegia oxysepala HOM05D001396 ORTHO05D000493 1.3e-06 57.8 119 30.3
arahy.Tifrunner.gnm1.ann1.8XG5WK Arachis hypogaea HOM05D001477 ORTHO05D001182 1.3e-06 57.8 246 27.2
Peaxi162Scf00548g00425 Petunia axillaris HOM05D001396 ORTHO05D000493 1.3e-06 57.8 180 26.7
PGR102G1862 Punica granatum HOM05D000312 ORTHO05D000221 1.3e-06 57.8 203 27.6
Thecc.07G141300 Theobroma cacao HOM05D008030 ORTHO05D003385 1.7e-06 57.4 161 27.3
EL10Ac9g21142 Beta vulgaris HOM05D001477 ORTHO05D001182 2.2e-06 57.0 186 26.3
Hund25125 Selenicereus undatus HOM05D000312 ORTHO05D000221 2.2e-06 57.0 125 31.2
Sopen02g036860 Solanum pennellii HOM05D001396 ORTHO05D000493 2.2e-06 57.0 143 26.6
ATR0051G024 Amborella trichopoda HOM05D000312 ORTHO05D000221 2.9e-06 56.6 162 29.0
CANSAT54G1299 Cannabis sativa HOM05D000051 ORTHO05D010453 2.9e-06 56.6 181 27.1
CAN.G500.48 Capsicum annuum HOM05D006683 ORTHO05D008629 2.9e-06 56.6 207 28.0
Migut.E00546 Erythranthe guttata HOM05D005930 ORTHO05D003423 2.9e-06 56.6 210 23.8
Rhsim06G0151200 Rhododendron simsii HOM05D000312 ORTHO05D000493 2.9e-06 56.6 127 36.2
PGSC0003DMG400044512 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.9e-06 56.6 124 33.1
HanXRQChr08g0214711 Helianthus annuus HOM05D000312 ORTHO05D000221 3.8e-06 56.2 123 28.5
Peaxi162Scf00548g00426 Petunia axillaris HOM05D001396 ORTHO05D000493 3.8e-06 56.2 135 30.4
Rhsim13G0172800 Rhododendron simsii HOM05D001396 ORTHO05D000493 3.8e-06 56.2 170 30.6
Sc11g0002850 Simmondsia chinensis HOM05D000312 ORTHO05D000221 3.8e-06 56.2 121 30.6
Solyc02g092290.4 Solanum lycopersicum HOM05D001396 ORTHO05D000493 3.8e-06 56.2 143 26.6
PGSC0003DMG400006076 Solanum tuberosum HOM05D006683 ORTHO05D008629 3.8e-06 56.2 153 30.1
Cc10_g03500 Coffea canephora HOM05D000312 ORTHO05D000221 4.9e-06 55.8 149 29.5
PGSC0003DMG400036801 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.9e-06 55.8 188 27.1
arahy.Tifrunner.gnm1.ann1.6K70C8 Arachis hypogaea HOM05D001477 ORTHO05D001182 6.4e-06 55.5 240 27.5
Peaxi162Scf00226g00815 Petunia axillaris HOM05D001396 ORTHO05D000493 6.4e-06 55.5 178 27.0
Prupe.4G159000 Prunus persica HOM05D000051 ORTHO05D000015 6.4e-06 55.5 138 31.9
PGSC0003DMG400021415 Solanum tuberosum HOM05D001396 ORTHO05D000493 6.4e-06 55.5 142 26.8
TAR371G0540 Trochodendron aralioides HOM05D000312 ORTHO05D000221 6.4e-06 55.5 196 27.0
TAR371G1213 Trochodendron aralioides HOM05D000312 ORTHO05D000221 6.4e-06 55.5 196 27.0
arahy.Tifrunner.gnm1.ann1.U2Q3GN Arachis hypogaea HOM05D001477 ORTHO05D001182 8.4e-06 55.1 226 28.8
ECA247G1279 Erigeron canadensis HOM05D001477 ORTHO05D001182 8.4e-06 55.1 169 30.8
Migut.M00518 Erythranthe guttata HOM05D005930 ORTHO05D003423 8.4e-06 55.1 232 25.0
Medtr1g011410 Medicago truncatula HOM05D000312 ORTHO05D000221 8.4e-06 55.1 125 32.8
PGSC0003DMG400018867 Solanum tuberosum HOM05D006683 ORTHO05D008629 8.4e-06 55.1 179 28.5


User provided reference genes

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