Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.5e-173 612.8 319 100.0
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 4.4e-154 548.1 319 89.3
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 2.2e-153 545.8 320 89.7
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 2.3e-150 535.8 320 88.4
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 3.9e-150 535.0 320 88.1
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 6.0e-135 484.6 321 83.5
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 2.2e-105 386.3 323 64.7
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.1e-101 374.0 327 63.9
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 3.3e-101 372.5 308 67.2
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 7.4e-101 371.3 325 64.3
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.3e-100 370.5 248 77.4
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 3.7e-100 369.0 327 62.4
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 4.8e-100 368.6 339 61.7
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.4e-99 367.1 279 70.3
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 1.2e-98 364.0 338 61.2
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 2.2e-97 359.8 223 81.2
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 3.8e-97 359.0 217 83.4
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.1e-96 357.5 220 82.3
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.1e-96 357.5 236 76.7
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 2.5e-96 356.3 320 61.2
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 3.2e-96 355.9 243 77.0
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 4.2e-96 355.5 220 83.2
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 9.3e-96 354.4 220 82.7
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 2.1e-95 353.2 234 77.4
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 2.1e-95 353.2 234 77.4
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 4.6e-95 352.1 222 80.6
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 2.3e-94 349.7 222 80.2
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 2.3e-94 349.7 217 82.9
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 3.0e-94 349.4 222 80.2
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 3.9e-94 349.0 218 80.7
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 5.1e-94 348.6 265 71.3
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 5.1e-94 348.6 333 61.3
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 6.7e-94 348.2 251 73.7
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 6.7e-94 348.2 249 75.5
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 8.7e-94 347.8 307 62.9
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 8.7e-94 347.8 244 75.4
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.9e-93 346.7 248 73.4
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.5e-93 346.3 223 78.5
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.5e-93 346.3 234 76.9
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 2.5e-93 346.3 226 78.8
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 3.3e-93 345.9 241 74.7
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 4.3e-93 345.5 321 61.1
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 5.7e-93 345.1 230 78.7
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 5.7e-93 345.1 243 75.3
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 7.4e-93 344.7 244 76.2
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.1e-92 343.2 217 82.9
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 2.8e-92 342.8 256 69.1
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 2.8e-92 342.8 319 59.6
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 3.7e-92 342.4 218 79.8
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 6.2e-92 341.7 217 79.7
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 6.2e-92 341.7 217 79.7
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.1e-91 340.9 217 80.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.8e-91 340.1 217 79.3
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 4.1e-91 339.0 214 78.5
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 5.3e-91 338.6 263 68.1
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 6.9e-91 338.2 220 79.5
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.2e-90 337.4 223 76.2
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 2.6e-90 336.3 340 57.9
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 4.5e-90 335.5 214 77.1
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 1.7e-89 333.6 224 78.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 6.5e-89 331.6 267 68.5
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 8.4e-89 331.3 282 65.6
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.4e-88 330.5 219 75.3
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.9e-88 330.1 246 69.1
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.5e-88 329.7 271 66.8
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.5e-88 329.7 220 79.1
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 7.2e-88 328.2 220 79.1
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 9.3e-88 327.8 220 78.6
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 9.3e-88 327.8 204 82.8
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.2e-87 327.4 204 82.8
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.6e-87 327.0 220 78.2
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.1e-87 326.6 204 82.8
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 2.1e-87 326.6 220 77.7
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.5e-87 325.9 218 75.2
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 4.6e-87 325.5 218 74.8
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 6.1e-87 325.1 218 74.8
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 6.1e-87 325.1 218 74.8
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 7.9e-87 324.7 220 78.6
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.9e-87 324.7 218 74.8
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 7.9e-87 324.7 215 78.1
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 7.9e-87 324.7 217 76.0
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 7.9e-87 324.7 220 78.6
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.3e-86 323.9 218 74.8
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.0e-86 322.8 220 77.7
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 5.1e-86 322.0 217 76.0
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 6.7e-86 321.6 220 77.7
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 6.7e-86 321.6 270 65.2
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.1e-85 320.9 218 75.2
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.9e-85 320.1 202 81.7
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 2.5e-85 319.7 218 77.1
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 3.3e-85 319.3 204 80.9
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 5.7e-85 318.5 218 76.6
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 5.7e-85 318.5 263 65.4
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 5.7e-85 318.5 214 76.6
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 7.4e-85 318.2 214 77.1
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 7.4e-85 318.2 214 77.1
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 9.7e-85 317.8 266 65.0
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.3e-84 317.4 189 84.1
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 2.2e-84 316.6 242 67.4
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 3.7e-84 315.8 215 75.3
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 4.1e-83 312.4 217 73.3
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 7.7e-82 308.1 202 79.2
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 2.2e-81 306.6 202 78.7
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 2.3e-78 296.6 163 90.8
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.1e-75 287.7 221 67.9
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.0e-73 281.2 210 71.0
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 3.2e-72 276.2 208 67.8
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 8.8e-70 268.1 207 64.7
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 5.0e-65 252.3 218 66.1
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.5e-61 240.7 193 62.7
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 4.4e-61 239.2 187 63.6
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 7.5e-61 238.4 141 81.6
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 4.1e-51 206.1 182 56.6
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 7.7e-50 201.8 165 60.0
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 2.2e-49 200.3 185 56.2
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 2.7e-47 193.4 181 53.0
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.3e-46 190.3 130 75.4
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 3.7e-44 183.0 176 50.0
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 7.7e-42 175.3 222 44.1
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 2.3e-38 163.7 141 62.4
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 4.3e-32 142.9 156 53.8
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.7e-25 120.9 150 40.0
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 4.7e-23 112.8 65 84.6
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 7.5e-21 105.5 109 57.8
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.9e-17 93.2 53 84.9
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.1e-14 85.1 75 62.7
DCAR_019223 Daucus carota HOM05D001558 ORTHO05D021140 4.0e-06 56.6 73 32.9


User provided reference genes

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