Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 0.0e+00 2364.0 1219 100.0
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1902.9 1217 80.9
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1896.7 1211 80.7
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1825.8 1323 73.5
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1686.4 1088 79.7
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1328.5 1181 62.3
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 1223.4 1226 55.4
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1190.3 1219 53.6
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1172.5 1221 53.0
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1146.0 1261 50.8
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1140.6 1220 51.5
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1127.1 1218 51.7
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1117.1 1230 51.2
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1099.7 1234 50.5
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1097.4 1223 49.9
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1084.3 1222 49.9
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 3.5e-308 1062.0 1225 49.5
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 5.9e-308 1061.2 1219 49.8
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 7.2e-306 1054.3 1216 48.2
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 7.2e-306 1054.3 1213 49.5
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 6.3e-302 1041.2 1225 48.6
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 8.3e-302 1040.8 1223 48.5
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 3.1e-301 1038.9 1219 47.7
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 7.7e-300 1034.2 1220 46.0
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 8.5e-299 1030.8 1213 47.1
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 1.6e-297 1026.5 1214 48.6
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 4.7e-297 1025.0 1213 47.0
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 4.0e-296 1021.9 1235 48.4
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 1.2e-295 1020.4 1211 46.2
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 1.5e-295 1020.0 1216 47.6
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 4.4e-295 1018.5 1213 46.7
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 9.1e-293 1010.7 1239 46.6
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.2e-292 1010.4 1218 48.3
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 2.7e-292 1009.2 1220 47.7
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 4.7e-289 998.4 1218 45.7
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 4.7e-289 998.4 1225 47.5
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 3.9e-283 978.8 1216 46.3
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.6e-281 973.4 1218 46.0
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 3.6e-281 972.2 1221 46.1
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 1.8e-280 969.9 1229 45.7
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.0e-280 968.8 1220 45.9
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 4.4e-279 965.3 1224 45.9
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 1.4e-277 960.3 1211 45.9
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 2.7e-276 956.1 1226 45.7
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 5.0e-275 951.8 1221 46.4
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 1.5e-274 950.3 1220 44.4
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 1.5e-274 950.3 1218 45.5
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 7.3e-274 948.0 1233 44.7
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 4.0e-272 942.2 1218 45.2
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 8.9e-272 941.0 1221 45.0
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 2.0e-271 939.9 1221 43.9
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 3.4e-271 939.1 1221 45.0
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 3.7e-270 935.6 1225 44.2
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 4.9e-270 935.3 1214 44.1
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 1.4e-269 933.7 1216 43.8
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 1.7e-267 926.8 1242 44.2
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.1e-264 916.0 1219 44.5
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 8.9e-264 914.4 1225 43.7
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 7.6e-263 911.4 1226 43.7
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 1.1e-261 907.5 1217 43.6
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.5e-258 896.3 1435 39.4
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 2.0e-255 886.7 1220 42.5
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 5.4e-253 878.6 1192 42.7
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 1.6e-252 877.1 1220 43.0
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 6.0e-252 875.2 1225 42.4
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 7.8e-252 874.8 1225 42.4
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 7.8e-252 874.8 1254 42.3
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 4.3e-250 869.0 1246 42.8
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 8.1e-249 864.8 1220 41.7
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 3.4e-247 859.4 1213 40.8
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 8.4e-246 854.7 1218 42.4
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 1.4e-245 854.0 1210 41.4
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 1.9e-245 853.6 1217 41.4
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 3.0e-243 846.3 1214 41.7
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 5.3e-240 835.5 1217 40.9
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 2.6e-239 833.2 1217 40.8
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 2.6e-239 833.2 1217 40.8
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 1.3e-238 830.9 1217 40.8
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 1.6e-236 823.9 1215 40.6
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 4.6e-236 822.4 1221 41.3
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 4.3e-234 815.8 1239 39.4
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 9.3e-229 798.1 1210 41.8
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 1.8e-227 793.9 1210 41.1
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 4.3e-210 736.1 1237 38.0
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 4.7e-204 716.1 1023 40.6
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 1.0e-198 698.4 1217 37.2
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 3.8e-190 669.8 1214 36.9
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.0e-174 618.6 750 45.1
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 3.3e-165 587.0 746 43.7
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 5.0e-158 563.1 1218 32.5
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 6.4e-137 493.0 794 41.6
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 7.6e-130 469.5 1303 29.2
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.6e-127 461.8 1298 28.1
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 6.0e-127 459.9 512 49.6
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.6e-106 391.3 778 34.7
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.9e-105 387.9 1262 26.2
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 3.2e-104 384.4 420 50.0
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.5e-101 374.8 751 34.0
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 5.7e-101 373.6 607 37.9
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 2.5e-96 358.2 391 47.6
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 4.2e-96 357.5 657 35.6
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 5.2e-78 297.4 1404 23.4
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.1e-75 289.7 634 31.7
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 2.2e-52 212.2 477 28.1
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 7.8e-42 177.2 213 47.9
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 8.3e-36 157.1 403 31.5
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 7.1e-35 154.1 136 56.6
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.7e-28 132.9 678 23.6
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.9e-24 119.4 65 86.2
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 1.8e-22 112.8 146 49.3
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.3e-20 106.7 153 40.5
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 2.4e-19 102.4 123 46.3
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.6e-18 99.8 112 50.0
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 6.0e-18 97.8 215 30.7
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 3.9e-17 95.1 113 46.9
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 2.9e-12 79.0 113 43.4
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 1.4e-11 76.6 92 46.7
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 7.9e-10 70.9 78 51.3
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.7e-07 62.0 84 39.3


User provided reference genes

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