Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 4.5e-92 341.3 177 100.0
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.1e-81 305.8 165 95.8
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.4e-80 303.1 165 94.5
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 4.0e-80 301.6 165 94.5
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 4.0e-80 301.6 165 94.5
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.6e-79 298.9 164 95.7
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.2e-76 290.0 165 90.9
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 8.9e-64 247.3 166 76.5
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 9.8e-63 243.8 165 74.5
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.1e-61 240.4 163 77.9
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 4.1e-61 238.4 151 80.8
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 3.9e-59 231.9 163 73.0
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 6.6e-59 231.1 166 72.3
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 8.6e-59 230.7 165 73.3
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.5e-58 229.9 165 73.3
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 3.3e-58 228.8 189 67.7
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 4.3e-58 228.4 165 73.3
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.8e-57 225.7 165 72.1
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.6e-57 225.3 165 74.5
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 8.1e-57 224.2 165 72.1
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.2e-55 220.3 161 68.9
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 7.6e-55 217.6 165 70.3
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 4.9e-54 214.9 160 71.2
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.9e-53 213.0 163 68.7
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.2e-53 212.2 167 69.5
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 3.2e-53 212.2 169 68.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 9.2e-53 210.7 147 75.5
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.2e-52 210.3 138 76.8
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.6e-52 209.9 165 66.7
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 2.1e-52 209.5 151 72.2
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.1e-52 209.5 165 64.8
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 2.7e-52 209.1 165 66.7
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 1.3e-51 206.8 159 66.7
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 2.3e-51 206.1 161 65.8
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 3.0e-51 205.7 163 65.6
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 3.0e-51 205.7 165 64.8
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 3.9e-51 205.3 165 63.6
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 3.9e-51 205.3 160 67.5
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 8.6e-51 204.1 160 66.9
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 8.6e-51 204.1 165 65.5
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 1.5e-50 203.4 165 63.0
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.5e-50 203.4 156 66.0
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 3.3e-50 202.2 165 64.2
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 4.3e-50 201.8 160 65.6
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 7.3e-50 201.1 156 66.7
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.6e-49 199.9 152 69.1
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.1e-49 199.5 165 66.1
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 3.6e-49 198.7 152 70.4
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.1e-48 197.2 168 65.5
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 4.0e-48 195.3 156 66.0
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 4.0e-48 195.3 160 65.0
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 6.8e-48 194.5 163 62.0
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 6.8e-48 194.5 160 64.4
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.5e-47 193.4 151 66.9
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.0e-47 193.0 165 64.2
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 5.8e-47 191.4 160 61.2
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 5.8e-47 191.4 165 63.6
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 9.9e-47 190.7 156 64.7
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 9.9e-47 190.7 165 61.2
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.3e-46 190.3 151 65.6
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.3e-46 190.3 165 63.6
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 2.9e-46 189.1 177 58.8
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 3.8e-46 188.7 165 59.4
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 4.9e-46 188.3 178 57.3
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 4.9e-46 188.3 174 59.8
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 8.4e-46 187.6 160 60.0
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.4e-45 186.8 165 58.8
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 1.4e-45 186.8 165 59.4
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 2.4e-45 186.0 177 57.6
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 4.2e-45 185.3 143 66.4
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 5.4e-45 184.9 138 68.8
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 5.4e-45 184.9 165 59.4
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.6e-44 183.3 220 51.8
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.6e-44 183.3 144 65.3
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.1e-44 183.0 144 67.4
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 4.6e-44 181.8 158 60.1
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 4.6e-44 181.8 163 57.7
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 6.0e-44 181.4 153 64.7
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.0e-43 180.6 152 59.2
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.0e-43 180.6 176 59.1
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.3e-43 180.3 150 60.0
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.7e-43 179.9 182 57.1
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.7e-43 179.9 164 59.8
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.3e-43 179.5 151 61.6
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 3.0e-43 179.1 150 60.7
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 3.0e-43 179.1 150 60.7
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 3.0e-43 179.1 150 60.7
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 3.0e-43 179.1 150 60.7
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 3.0e-43 179.1 150 60.7
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 3.0e-43 179.1 150 60.0
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.9e-43 178.7 176 55.1
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 3.9e-43 178.7 158 59.5
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.6e-43 177.9 165 58.8
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 8.7e-43 177.6 150 60.0
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 8.7e-43 177.6 164 59.8
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.1e-42 177.2 142 62.7
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.1e-42 177.2 165 62.4
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.9e-42 176.4 156 60.9
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-41 173.7 153 62.1
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 4.8e-41 171.8 166 59.6
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.1e-40 170.6 220 50.0
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.8e-40 169.9 163 59.5
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 6.9e-40 167.9 129 68.2
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 9.0e-40 167.5 187 50.3
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.5e-39 166.8 112 74.1
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.4e-38 161.4 166 55.4
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.1e-37 160.6 145 64.1
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 1.9e-37 159.8 160 55.0
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 2.4e-37 159.5 161 58.4
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 3.2e-37 159.1 152 55.3
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 7.1e-37 157.9 169 54.4
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.5e-36 155.6 178 50.0
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 4.0e-32 142.1 170 47.1
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.6e-31 139.4 153 49.7
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 1.7e-30 136.7 156 48.7
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.1e-29 134.0 127 54.3
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.1e-29 134.0 161 46.6
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.7e-27 124.8 107 58.9
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.3e-26 122.5 87 69.0
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.4e-24 117.1 162 38.9
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.0e-23 113.2 92 62.0
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 1.7e-22 110.2 100 57.0
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.8e-22 109.0 110 58.2
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.4e-21 107.1 147 44.2
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 6.0e-20 101.7 72 68.1
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 3.9e-19 99.0 93 55.9
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 4.8e-17 92.0 100 48.0
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.8e-16 90.1 57 77.2
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.6e-15 86.3 91 58.2
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 8.4e-14 81.3 85 55.3
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 7.2e-13 78.2 143 37.1
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 7.2e-13 78.2 66 62.1
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 6.1e-12 75.1 87 51.7
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 6.1e-12 75.1 87 51.7
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 7.9e-12 74.7 64 60.9
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 2.3e-11 73.2 53 73.6
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.9e-10 70.1 47 70.2
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 6.3e-09 65.1 165 32.1
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.2e-07 60.8 91 42.9
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.5e-07 60.5 60 61.7
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 2.9e-06 56.2 62 53.2
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 8.5e-06 54.7 89 44.9


User provided reference genes

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