Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 4.4e-275 950.7 482 100.0
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 2.6e-259 898.3 482 91.7
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.3e-258 896.0 482 89.4
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 4.9e-258 894.0 482 89.0
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.1e-253 878.6 438 95.4
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.1e-253 878.6 438 95.4
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 2.5e-246 855.1 480 88.8
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 8.2e-245 850.1 481 83.8
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.4e-244 848.6 483 84.5
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.4e-244 848.6 483 84.5
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 5.3e-244 847.4 481 83.6
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 4.5e-243 844.3 477 84.1
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 5.9e-243 844.0 481 83.0
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 1.3e-242 842.8 438 89.5
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 1.3e-242 842.8 482 83.6
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 2.2e-242 842.0 477 83.4
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 3.8e-242 841.3 483 82.8
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.4e-241 839.3 477 83.2
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.5e-241 838.6 477 84.3
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 3.2e-241 838.2 473 84.1
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 9.4e-241 836.6 477 83.0
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 9.4e-241 836.6 481 82.5
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 1.2e-240 836.3 477 83.6
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 1.2e-240 836.3 483 82.8
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.1e-240 835.5 477 83.0
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 2.7e-240 835.1 486 81.9
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.4e-239 832.8 477 82.6
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 1.8e-239 832.4 477 83.4
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.3e-239 832.0 476 82.8
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 5.1e-239 830.9 475 83.6
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 8.8e-239 830.1 477 82.6
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 2.5e-238 828.6 482 82.0
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.3e-238 827.8 477 82.4
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.7e-238 827.4 476 82.4
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.7e-238 827.4 481 82.1
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.3e-237 826.2 481 81.3
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 2.8e-237 825.1 476 83.0
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.7e-237 824.7 478 82.0
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 4.8e-237 824.3 476 82.1
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 6.3e-237 823.9 478 81.6
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.8e-236 822.4 482 81.1
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 3.1e-236 821.6 438 87.0
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 4.1e-236 821.2 438 87.7
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 5.3e-236 820.8 484 80.6
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.2e-235 819.7 475 82.9
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.2e-235 819.7 438 87.2
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.5e-235 819.3 477 81.1
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 3.4e-235 818.1 477 81.8
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.3e-234 816.2 473 82.0
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 2.2e-234 815.5 477 81.1
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 2.9e-234 815.1 438 86.8
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 3.8e-234 814.7 478 81.8
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 1.9e-233 812.4 438 86.1
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 3.2e-233 811.6 473 80.5
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.2e-233 811.6 442 86.4
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 3.2e-233 811.6 476 80.9
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 9.4e-233 810.1 477 82.2
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.2e-232 809.7 477 81.6
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.6e-232 809.3 476 81.1
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 3.6e-232 808.1 473 81.2
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 3.6e-232 808.1 477 81.8
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 7.9e-232 807.0 481 80.9
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 7.9e-232 807.0 476 82.4
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.0e-231 806.6 497 77.3
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 2.3e-231 805.4 473 81.4
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 8.8e-231 803.5 478 81.4
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 3.3e-230 801.6 473 81.4
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 4.4e-230 801.2 438 84.5
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 5.7e-230 800.8 439 83.4
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 9.7e-230 800.0 436 85.3
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 9.7e-230 800.0 478 79.7
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.3e-229 799.7 438 84.2
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.2e-229 798.9 473 80.5
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 2.2e-229 798.9 478 79.7
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 2.2e-229 798.9 439 85.2
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 2.8e-229 798.5 438 84.0
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 2.8e-229 798.5 438 84.7
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 3.7e-229 798.1 476 78.6
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 3.7e-229 798.1 439 83.1
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 4.8e-229 797.7 458 82.8
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.1e-228 796.6 473 80.1
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 1.8e-228 795.8 438 84.7
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 2.0e-227 792.3 474 79.5
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 3.4e-227 791.6 476 79.4
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 4.5e-227 791.2 473 79.7
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 7.7e-227 790.4 473 79.5
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.0e-226 790.0 474 80.8
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 1.3e-226 789.6 473 79.5
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 2.2e-226 788.9 476 79.0
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 7.2e-225 783.9 473 78.9
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.2e-224 783.1 473 78.9
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 1.2e-224 783.1 481 78.2
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.2e-224 783.1 473 78.9
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 3.6e-224 781.6 473 78.6
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 2.3e-223 778.9 482 77.4
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 3.0e-223 778.5 473 78.2
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.6e-222 775.4 477 78.4
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.4e-220 769.6 495 76.4
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.7e-218 762.7 498 75.3
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 9.7e-214 746.9 438 80.4
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.0e-211 739.2 438 81.1
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 4.2e-209 731.5 477 74.6
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 2.7e-208 728.8 476 74.6
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.6e-208 728.4 503 72.4
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 8.8e-207 723.8 435 77.2
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 1.2e-206 723.4 505 72.9
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 2.4e-204 715.7 436 76.4
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 9.1e-204 713.8 439 75.9
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.5e-201 706.4 431 77.0
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 7.2e-201 704.1 498 71.7
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 3.6e-200 701.8 483 71.2
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 2.9e-194 682.2 387 82.4
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.4e-188 663.3 480 70.2
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 5.0e-186 654.8 445 73.7
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 6.2e-176 621.3 369 78.6
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 7.5e-174 614.4 369 78.0
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.5e-169 599.4 438 68.0
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 2.6e-158 562.8 477 61.0
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.8e-151 540.0 341 78.3
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.1e-148 530.8 304 79.9
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 9.9e-142 507.7 304 78.0
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 1.3e-141 507.3 410 61.7
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 5.5e-140 501.9 281 83.3
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 6.0e-139 498.4 275 84.0
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 2.1e-136 490.0 435 55.2
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.3e-125 454.1 308 71.4
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 8.2e-120 434.9 305 69.8
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 5.7e-105 385.6 211 86.3
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.7e-104 384.0 211 82.5
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.2e-99 367.9 228 76.3
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.2e-99 367.9 228 76.3
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 8.5e-93 345.1 200 82.5
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 1.8e-87 327.4 414 45.9
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.7e-80 304.3 461 41.9
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 1.3e-69 268.1 132 87.9
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 2.8e-67 260.4 425 40.2
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 3.6e-59 233.4 166 68.7
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.4e-58 231.5 140 74.3
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 1.8e-58 231.1 166 68.1
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 8.9e-58 228.8 140 73.6
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 5.8e-49 199.5 99 86.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 5.8e-49 199.5 99 86.9
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 3.5e-46 190.3 111 80.2
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.5e-38 163.7 105 72.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 6.6e-37 159.5 97 75.3
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.1e-35 154.5 125 65.6
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 4.9e-32 143.3 77 80.5
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 1.9e-28 131.3 77 76.6
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 3.7e-27 127.1 65 86.2
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.0e-21 109.0 56 85.7
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.8e-21 108.2 135 43.0
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 3.0e-21 107.5 66 71.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.4e-15 88.6 72 63.9
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.4e-15 88.6 72 63.9
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 5.5e-15 86.7 45 84.4
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 9.3e-15 85.9 73 61.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.1e-10 72.4 46 76.1
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 4.1e-10 70.5 34 85.3
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 4.5e-09 67.0 34 94.1
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.9e-07 61.6 36 72.2
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 9.4e-07 59.3 62 53.2
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 3.6e-06 57.4 40 60.0
arahy.Tifrunner.gnm1.ann1.E22CU6 Arachis hypogaea HOM05D001714 ORTHO05D084687 4.6e-06 57.0 39 69.2


User provided reference genes

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