Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G575.1 Capsicum annuum HOM05D002496 ORTHO05D002787 3.8e-285 984.2 500 100.0
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 1.1e-151 540.8 884 43.1
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 1.1e-151 540.8 884 43.1
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 1.0e-149 534.3 874 42.4
CAN.G567.118 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-132 477.2 292 87.7
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 5.9e-129 465.3 895 37.8
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 6.5e-128 461.8 290 84.5
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 1.2e-126 457.6 884 37.7
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 3.6e-126 456.1 990 34.9
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 9.7e-124 448.0 1043 33.7
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 1.3e-123 447.6 884 36.5
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 8.2e-123 444.9 313 74.4
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 1.5e-121 440.7 314 73.6
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 2.6e-121 439.9 809 37.5
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 5.9e-121 438.7 884 36.4
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 1.0e-120 438.0 893 36.4
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.7e-120 437.2 1000 34.0
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 2.9e-120 436.4 884 36.2
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 3.8e-120 436.0 1004 33.3
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 6.5e-120 435.3 1018 33.4
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 1.5e-119 434.1 900 35.7
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 1.9e-119 433.7 899 36.0
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 1.9e-119 433.7 898 35.9
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 5.5e-119 432.2 891 36.4
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 7.2e-119 431.8 858 36.0
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 4.7e-118 429.1 889 35.4
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 6.1e-118 428.7 908 35.6
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 6.1e-118 428.7 818 38.8
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 8.0e-118 428.3 1000 33.9
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 8.0e-118 428.3 893 35.3
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 1.4e-117 427.6 864 36.5
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 3.0e-117 426.4 900 35.1
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 3.0e-117 426.4 314 71.0
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 8.8e-117 424.9 314 70.7
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 4.4e-116 422.5 899 35.0
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 5.7e-116 422.2 900 35.4
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 5.7e-116 422.2 314 70.7
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.3e-115 421.0 880 35.1
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 2.2e-115 420.2 314 70.7
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 2.8e-115 419.9 314 71.3
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 2.8e-115 419.9 314 70.1
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 1.1e-114 417.9 893 35.4
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 1.4e-114 417.5 894 35.2
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 2.4e-114 416.8 314 69.1
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 3.5e-113 412.9 314 68.2
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 3.5e-113 412.9 314 69.7
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 4.5e-113 412.5 315 70.2
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 5.9e-113 412.1 314 68.8
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 1.3e-112 411.0 896 34.5
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 1.7e-112 410.6 902 34.3
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 1.7e-112 410.6 894 34.9
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 2.2e-112 410.2 830 36.6
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 2.2e-112 410.2 902 34.1
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 2.2e-112 410.2 899 34.3
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 3.8e-112 409.5 879 34.5
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 1.5e-111 407.5 898 34.3
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.9e-111 407.1 314 68.8
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 1.9e-111 407.1 314 68.5
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 3.2e-111 406.4 315 68.3
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 7.2e-111 405.2 894 34.5
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 9.4e-111 404.8 883 34.8
CAN.G1484.12 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-110 404.4 259 85.3
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 1.6e-110 404.1 314 68.5
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 1.6e-110 404.1 314 68.5
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 1.6e-110 404.1 314 67.5
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 1.6e-110 404.1 894 34.6
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 2.7e-110 403.3 314 68.8
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 3.6e-110 402.9 314 68.2
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 6.1e-110 402.1 314 67.2
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 1.0e-109 401.4 314 67.5
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 4.0e-109 399.4 902 33.8
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 7.5e-108 395.2 896 34.4
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 1.7e-107 394.0 314 68.2
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 4.8e-107 392.5 896 34.3
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 1.4e-106 391.0 314 67.8
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.8e-106 390.6 314 63.7
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 2.4e-106 390.2 952 32.8
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 4.1e-106 389.4 314 64.6
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 1.2e-105 387.9 314 64.0
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 1.2e-105 387.9 314 64.0
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 2.0e-105 387.1 901 34.2
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 3.5e-105 386.3 314 65.0
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 3.5e-105 386.3 314 65.9
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.7e-104 384.0 890 32.9
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 1.5e-103 380.9 314 62.1
CAN.G1783.6 Capsicum annuum HOM05D002496 ORTHO05D002787 5.5e-103 379.0 235 89.4
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 7.2e-103 378.6 314 63.4
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 1.6e-102 377.5 866 33.1
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 1.6e-102 377.5 891 33.0
Dinv11477 Davidia involucrata HOM05D002496 ORTHO05D002787 8.0e-102 375.2 314 66.2
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.5e-100 370.9 909 31.9
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 5.7e-100 369.0 314 61.5
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 1.3e-99 367.9 583 41.9
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 1.7e-99 367.5 894 32.4
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 1.4e-98 364.4 894 32.1
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 4.1e-98 362.8 895 32.2
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 5.4e-98 362.5 891 32.2
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 1.6e-97 360.9 893 32.0
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 2.7e-97 360.1 893 32.0
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 2.7e-97 360.1 894 32.1
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 2.7e-97 360.1 314 59.6
Lj2A763G36 Lonicera japonica HOM05D002496 ORTHO05D002787 4.5e-97 359.4 260 71.9
SEGI_26512 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 1.7e-96 357.5 314 59.9
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 5.0e-96 355.9 314 60.5
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 8.6e-96 355.1 894 31.9
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 5.5e-95 352.4 887 31.8
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 5.5e-95 352.4 894 32.2
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 1.0e-93 348.2 899 31.7
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 4.7e-86 322.8 319 51.7
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.8e-85 320.9 319 52.7
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 3.4e-84 316.6 314 54.5
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 4.4e-84 316.2 315 54.3
VMungo0251G1507 Vigna mungo HOM05D002496 ORTHO05D002787 7.5e-84 315.5 252 66.7
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 1.6e-81 307.8 323 52.3
SHI31315 Sapria himalayana HOM05D002496 ORTHO05D002787 2.5e-79 300.4 317 53.0
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 3.3e-71 273.5 319 48.3
CAN.G5700.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.6e-68 263.8 142 95.8
CAN.G2091.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.3e-64 250.8 135 96.3
CAN.G1783.4 Capsicum annuum HOM05D002496 ORTHO05D002787 3.9e-56 223.4 168 73.8
TAR383G1071 Trochodendron aralioides HOM05D002496 ORTHO05D002787 2.4e-53 214.2 286 48.3
CAN.G2026.4 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-50 205.3 182 70.9
VMungo0251G3571 Vigna mungo HOM05D002496 ORTHO05D002787 3.2e-50 203.8 112 89.3
Dinv11478 Davidia involucrata HOM05D002496 ORTHO05D002787 2.7e-49 200.7 109 89.0
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 6.0e-49 199.5 123 84.6
CAN.G108.57 Capsicum annuum HOM05D002496 ORTHO05D002787 6.6e-48 196.1 102 95.1
Psat3g144720 Pisum sativum HOM05D002496 ORTHO05D002787 2.1e-46 191.0 124 75.8
TWI34G0193 Tripterygium wilfordii HOM05D002496 ORTHO05D002787 3.4e-44 183.7 108 85.2
C03p92660 Brassica napus HOM05D002496 ORTHO05D002787 5.8e-44 183.0 187 58.8
C03p92650 Brassica napus HOM05D002496 ORTHO05D002787 5.6e-39 166.4 156 57.7
SHI31316 Sapria himalayana HOM05D002496 ORTHO05D002787 5.6e-39 166.4 124 67.7
arahy.Tifrunner.gnm1.ann1.WZQ8WP Arachis hypogaea HOM05D002496 ORTHO05D002787 7.1e-34 149.4 192 49.5
SEGI_17528 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 2.3e-32 144.4 97 78.4
CAN.G575.104 Capsicum annuum HOM05D000033 ORTHO05D007915 1.1e-23 115.5 86 68.6
CAN.G1783.7 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-22 112.1 66 86.4
Psat7g106000 Pisum sativum HOM05D002496 ORTHO05D002787 4.8e-22 110.2 58 84.5
CAN.G7166.1 Capsicum annuum HOM05D002496 ORTHO05D002787 7.7e-20 102.8 88 68.2
QL03p015964 Quercus lobata HOM05D002496 ORTHO05D002787 1.9e-18 98.2 75 64.0
Lj2A763T47 Lonicera japonica HOM05D002496 ORTHO05D002787 2.5e-18 97.8 78 65.4
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 2.3e-16 91.3 45 97.8
CBR_g23686 Chara braunii HOM05D002496 ORTHO05D002787 5.7e-15 86.7 138 38.4
CBR_g23691 Chara braunii HOM05D001190 ORTHO05D001764 5.7e-15 86.7 192 38.0
Lsat_1_v5_gn_7_65640 Lactuca sativa HOM05D002496 ORTHO05D002787 2.2e-14 84.7 105 48.6
arahy.Tifrunner.gnm1.ann1.Q36ZPG Arachis hypogaea HOM05D002496 ORTHO05D002787 3.1e-13 80.9 54 74.1
CAN.G792.4 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-11 75.5 47 89.4
MBI06_g12312_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 9.4e-10 69.3 46 78.3
Lsat_1_v5_gn_5_57160 Lactuca sativa HOM05D004017 ORTHO05D004612 1.3e-06 58.9 45 64.4
Lsat_1_v5_gn_3_63601 Lactuca sativa HOM05D000696 ORTHO05D004612 2.8e-06 57.8 45 62.2
Lsat_1_v5_gn_8_87720 Lactuca sativa HOM05D002496 ORTHO05D002787 6.3e-06 56.6 90 44.4


User provided reference genes

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