Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 3.0e-230 801.6 431 100.0
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 2.4e-195 685.6 425 85.6
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 5.5e-192 674.5 433 85.9
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 3.3e-189 665.2 433 82.0
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.4e-184 649.8 448 77.2
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.1e-175 619.4 448 75.9
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.5e-173 613.2 418 78.5
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 9.1e-163 577.4 436 69.0
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 8.6e-161 570.9 425 71.8
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 4.2e-160 568.5 430 69.1
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 5.5e-160 568.2 436 68.6
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 7.2e-160 567.8 427 67.9
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 7.2e-160 567.8 447 67.1
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.6e-159 566.6 440 67.0
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 3.6e-159 565.5 442 67.6
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.4e-158 563.5 437 67.0
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 2.3e-158 562.8 454 66.1
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 6.8e-158 561.2 447 67.8
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-157 560.1 434 67.7
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.6e-157 559.3 451 69.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 4.4e-157 558.5 444 65.3
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 4.4e-157 558.5 431 66.8
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 5.7e-157 558.1 431 67.5
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.3e-156 557.0 437 66.8
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.3e-156 557.0 437 66.8
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-156 556.2 441 65.1
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 2.2e-156 556.2 437 66.6
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 2.2e-156 556.2 435 68.5
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 2.2e-156 556.2 434 67.1
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 2.2e-156 556.2 431 66.8
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.8e-156 555.8 437 64.8
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 3.7e-156 555.4 436 66.3
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 8.3e-156 554.3 436 69.7
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 4.1e-155 552.0 427 67.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.0e-155 551.2 427 66.0
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 9.2e-155 550.8 442 68.6
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 9.2e-155 550.8 440 66.1
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 9.2e-155 550.8 449 67.0
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.2e-154 550.4 427 65.8
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 2.0e-154 549.7 436 66.3
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.7e-154 549.3 440 65.7
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 3.5e-154 548.9 460 63.9
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.0e-153 547.4 427 66.0
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.7e-153 546.6 433 65.4
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 5.0e-153 545.0 427 67.9
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 5.0e-153 545.0 492 61.0
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 5.0e-153 545.0 444 65.8
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 8.6e-153 544.3 440 65.0
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.5e-152 543.5 446 64.8
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.5e-152 543.5 430 70.5
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.9e-152 543.1 450 65.1
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.3e-152 542.3 479 61.6
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 4.3e-152 542.0 433 65.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 7.3e-152 541.2 431 71.0
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 1.6e-151 540.0 451 64.1
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 6.1e-151 538.1 424 64.6
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 6.1e-151 538.1 463 62.2
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 8.0e-151 537.7 438 65.5
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.0e-150 537.3 427 67.9
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.0e-150 537.3 436 67.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.0e-150 537.3 436 64.7
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.4e-150 537.0 442 64.3
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.4e-150 537.0 435 66.4
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.8e-150 536.6 432 66.2
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 3.1e-150 535.8 441 63.3
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 3.1e-150 535.8 441 63.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.1e-150 535.8 426 64.8
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 4.0e-150 535.4 431 63.8
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 5.2e-150 535.0 427 64.6
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 5.2e-150 535.0 435 67.4
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 6.8e-150 534.6 431 67.5
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 6.8e-150 534.6 431 67.5
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.5e-149 533.5 439 65.6
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.0e-149 533.1 433 66.1
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.0e-149 533.1 424 67.5
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 3.4e-149 532.3 435 66.9
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 3.4e-149 532.3 309 83.8
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-148 530.4 421 65.1
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 4.9e-148 528.5 435 66.7
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 6.4e-148 528.1 445 64.0
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 6.4e-148 528.1 426 63.6
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.4e-147 526.9 428 67.8
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.4e-147 526.9 436 65.1
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 2.4e-147 526.2 421 67.0
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 2.4e-147 526.2 431 69.4
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 5.4e-147 525.0 436 68.1
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 9.2e-147 524.2 436 67.2
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 2.0e-146 523.1 420 67.1
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.0e-146 523.1 432 65.5
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.7e-146 522.7 437 63.6
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 6.0e-146 521.5 436 67.9
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.3e-145 520.4 475 59.8
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 3.0e-145 519.2 401 68.1
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.9e-144 516.5 431 68.4
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.3e-142 509.6 473 58.8
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 5.2e-142 508.4 423 62.6
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 6.8e-142 508.1 304 79.6
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 8.9e-142 507.7 422 63.7
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.5e-141 506.9 309 80.6
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.6e-141 506.1 423 64.3
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 7.5e-141 504.6 430 68.1
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.3e-140 503.8 489 57.5
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.2e-140 503.1 432 66.4
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 8.3e-140 501.1 429 66.2
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 4.1e-139 498.8 504 54.2
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.2e-139 497.7 426 62.0
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.2e-138 497.3 428 62.4
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 4.6e-138 495.4 436 61.0
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 6.0e-138 495.0 429 65.7
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.3e-137 493.8 304 77.6
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 3.0e-137 492.7 304 78.6
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 3.3e-136 489.2 456 58.8
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 9.5e-136 487.6 419 64.0
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 8.1e-135 484.6 304 77.0
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 6.8e-134 481.5 440 62.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 8.9e-134 481.1 409 67.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 8.9e-134 481.1 294 79.3
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 1.7e-129 466.8 443 57.6
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 3.9e-129 465.7 414 58.9
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 6.2e-127 458.4 309 72.2
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 8.1e-127 458.0 428 59.3
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 5.2e-126 455.3 446 56.7
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.2e-125 454.1 417 55.9
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 5.4e-123 445.3 241 88.4
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.1e-120 437.6 429 59.7
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.3e-119 434.1 459 55.1
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 2.1e-119 433.3 241 83.8
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.1e-118 431.0 286 72.0
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.1e-112 411.0 434 54.8
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.9e-112 410.2 287 69.0
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.0e-110 402.5 429 55.5
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 6.9e-110 401.7 305 66.2
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.9e-108 396.4 390 55.4
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.9e-108 395.6 299 67.9
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.7e-106 389.8 420 54.3
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 6.2e-103 378.6 297 67.7
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.1e-102 377.9 255 69.4
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 6.9e-102 375.2 387 54.0
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.9e-100 369.8 494 47.2
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.5e-100 368.6 287 66.6
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.3e-96 355.9 302 60.9
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.2e-91 339.7 448 47.1
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.2e-85 321.2 292 57.5
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.1e-80 304.7 292 53.1
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 5.9e-77 292.4 263 58.2
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.0e-60 236.1 399 42.9
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 7.2e-59 232.3 432 43.1
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.2e-41 172.9 328 35.7
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.2e-40 171.8 243 43.6
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.5e-35 154.1 98 76.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.6e-35 152.9 117 67.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.6e-29 134.8 125 56.8
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 6.2e-26 122.9 190 44.7
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.2e-22 110.5 67 77.6
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.5e-21 107.1 134 46.3
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 3.5e-21 107.1 99 56.6
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 6.0e-21 106.3 200 40.5
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.0e-20 105.5 99 55.6
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 2.1e-10 71.2 199 24.6
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 2.1e-10 71.2 205 25.9
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 1.1e-09 68.9 199 25.1
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.4e-09 67.8 199 24.6
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.4e-09 67.8 195 25.1
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.4e-09 67.8 199 24.6
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.4e-09 67.8 199 24.6
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 2.4e-09 67.8 199 24.6
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 3.4e-08 63.9 202 23.8
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 5.8e-08 63.2 199 23.1
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 7.6e-08 62.8 199 23.1
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 2.9e-07 60.8 199 24.1
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 2.9e-07 60.8 194 24.2
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 1.1e-06 58.9 199 23.1
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 1.9e-06 58.2 53 50.9
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.9e-06 58.2 203 22.7


User provided reference genes

Program Settings