Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 3603.1 1829 100.0
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 3227.6 1831 90.1
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 3083.5 1743 90.5
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 2937.1 1898 81.0
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 2113.6 1389 79.3
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2104.7 1868 60.4
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 2036.2 1851 58.2
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1997.6 1858 57.9
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1989.2 1871 57.2
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1986.1 1849 57.4
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1984.5 1847 57.1
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1973.7 1845 56.6
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1968.7 1853 56.9
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1961.4 2055 52.3
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1958.7 1844 56.3
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1956.4 1845 56.2
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1941.0 1846 55.9
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1934.5 1845 56.3
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1924.8 1877 55.7
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1916.7 1860 56.0
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1908.6 1856 55.0
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1907.1 1846 55.4
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1866.3 1649 59.3
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1859.3 1936 54.3
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1855.9 1868 54.2
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1841.2 1863 54.2
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1835.8 1865 54.3
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1832.4 1841 53.2
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1829.7 1848 53.2
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1828.5 1854 54.0
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1825.1 1849 53.7
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1824.3 1849 53.9
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1819.3 1854 53.9
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1818.5 1828 54.1
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1815.4 1845 53.3
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1813.5 1845 53.4
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1799.3 1849 53.1
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1796.2 1840 53.5
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1783.8 1852 52.5
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1780.4 1839 53.2
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1769.6 1844 53.0
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1769.2 1842 52.4
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1765.7 1857 52.2
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1765.7 1854 51.7
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1756.9 1833 52.9
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1753.8 1848 52.4
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1753.8 1740 55.1
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1747.6 1851 52.2
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1745.3 1852 51.8
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1736.1 1857 51.3
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1735.7 1853 51.1
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1725.7 1601 57.8
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1715.7 1861 51.0
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1712.6 1856 51.2
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1708.0 1856 51.2
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1705.3 1850 51.9
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1701.4 1883 50.3
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1697.6 1523 59.8
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1694.9 1887 50.7
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1692.6 1865 51.0
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1687.5 1846 50.6
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1677.9 1851 51.4
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1676.8 1850 50.8
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1676.0 1847 50.5
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1655.2 1554 57.3
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1649.0 1854 49.6
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1642.1 1851 49.9
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1637.1 1845 49.6
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1625.1 1854 49.7
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1611.7 1879 48.7
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1578.9 1539 55.3
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1566.2 1777 48.7
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1525.0 1654 51.5
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1465.7 1854 45.8
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1399.4 1139 64.0
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1317.0 1441 50.1
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1285.0 1423 49.8
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1203.0 1469 47.3
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1147.9 1070 57.8
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1130.2 1012 59.4
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 3.4e-307 1059.3 1913 36.1
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 6.6e-303 1045.0 1009 57.7
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 2.5e-302 1043.1 1362 46.4
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 5.6e-302 1042.0 1867 37.3
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 5.6e-302 1042.0 1485 43.4
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.1e-292 1009.6 954 56.2
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.0e-283 980.3 794 65.1
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 3.3e-262 909.8 806 60.4
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 7.4e-222 775.8 893 50.4
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.0e-202 712.2 751 53.4
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.1e-200 704.5 587 64.7
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.1e-196 692.2 411 88.8
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.2e-192 678.7 516 67.6
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.8e-168 597.8 340 91.8
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 8.1e-168 596.3 1505 30.6
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.8e-143 515.4 406 63.5
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 9.3e-140 503.1 408 61.8
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 8.7e-138 496.5 617 46.0
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 3.0e-130 471.5 572 45.8
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.5e-129 469.2 429 59.7
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 5.9e-126 457.2 478 53.3
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 1.2e-123 449.5 625 41.9
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 1.0e-122 446.4 400 58.5
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.9e-122 444.5 433 59.6
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 8.5e-117 426.8 310 68.7
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.4e-110 404.8 475 47.2
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.9e-100 372.5 541 39.7
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 5.9e-94 350.9 284 63.4
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 8.0e-91 340.5 308 58.8
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 2.3e-90 339.0 371 50.4
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 6.8e-82 310.8 348 50.3
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.2e-78 300.1 486 38.7
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 7.7e-78 297.4 522 34.9
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.7e-77 296.2 469 39.4
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 2.1e-75 289.3 369 42.8
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 6.8e-74 284.3 403 40.9
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 1.3e-72 280.0 179 77.1
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 6.4e-72 277.7 178 74.7
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.4e-71 275.8 551 32.7
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.1e-68 266.9 218 62.4
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 8.3e-64 250.8 254 52.8
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 1.1e-58 233.8 178 63.5
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 1.1e-55 223.8 776 26.0
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 1.1e-55 223.8 137 77.4
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 6.0e-54 218.0 402 36.3
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 5.2e-50 204.9 913 26.0
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 4.4e-49 201.8 296 38.9
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 2.9e-48 199.1 137 69.3
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 8.4e-48 197.6 403 36.0
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 6.0e-46 191.4 106 84.0
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.3e-45 190.3 186 54.8
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 8.6e-45 187.6 112 83.0
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.4e-39 169.5 148 52.7
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 1.8e-34 153.3 138 56.5
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.0e-34 152.1 153 53.6
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 1.4e-31 143.7 207 39.1
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 7.9e-30 137.9 151 41.1
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 6.7e-29 134.8 175 44.0
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 8.7e-29 134.4 170 45.3
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 1.3e-27 130.6 85 74.1
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 1.3e-27 130.6 85 75.3
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 2.4e-26 126.3 126 54.8
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 3.4e-25 122.5 136 49.3
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.9e-23 116.7 82 67.1
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 5.5e-23 115.2 82 67.1
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 7.1e-23 114.8 63 85.7
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.6e-22 112.1 78 66.7
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 7.9e-22 111.3 74 71.6
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 5.6e-20 105.1 52 96.2
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.3e-19 104.0 157 40.1
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.4e-18 100.5 83 59.0
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 6.5e-16 91.7 168 36.3
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 2.5e-15 89.7 117 42.7
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 3.2e-15 89.4 70 64.3
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.2e-15 89.0 132 40.9
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 7.9e-14 84.7 70 62.9
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 2.3e-13 83.2 106 42.5
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 2.3e-13 83.2 63 61.9
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 5.1e-13 82.0 64 64.1
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 6.7e-13 81.6 83 47.0
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.5e-12 80.5 232 27.6
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-12 79.7 49 75.5
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-12 79.7 49 75.5
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-12 79.7 49 75.5
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 3.7e-11 75.9 48 72.9
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 1.1e-10 74.3 191 30.9
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 1.1e-10 74.3 63 57.1
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.5e-09 70.5 147 31.3
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 7.6e-09 68.2 138 37.0
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 1.0e-08 67.8 135 32.6
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 2.5e-07 63.2 79 44.3
TAR369G0820 Trochodendron aralioides HOM05D049058 ORTHO05D005167 5.5e-07 62.0 67 49.3
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 7.2e-07 61.6 140 34.3
TAR369G0648 Trochodendron aralioides HOM05D049058 ORTHO05D005167 1.2e-06 60.8 44 65.9
BcaC09g49608 Brassica carinata HOM05D000205 ORTHO05D017260 2.1e-06 60.1 71 42.3
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 2.7e-06 59.7 187 27.8
BcaB07g32633 Brassica carinata HOM05D003893 ORTHO05D017260 3.6e-06 59.3 79 43.0
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 6.1e-06 58.5 58 43.1
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 6.1e-06 58.5 58 43.1


User provided reference genes

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