Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.0e-67 260.0 136 100.0
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 1.2e-65 253.1 136 95.6
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 1.2e-65 253.1 136 95.6
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 2.8e-65 251.9 136 91.2
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 3.6e-65 251.5 136 93.4
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 6.8e-64 247.3 136 92.6
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 2.2e-62 242.3 137 87.6
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 2.7e-52 208.8 137 78.1
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 4.6e-52 208.0 137 77.4
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 6.0e-52 207.6 136 75.7
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 1.0e-51 206.8 138 76.1
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 1.0e-51 206.8 138 76.1
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 1.0e-51 206.8 136 75.0
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 1.0e-51 206.8 139 77.0
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 1.0e-51 206.8 139 77.0
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 1.0e-51 206.8 136 74.3
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 1.7e-51 206.1 136 75.0
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 3.0e-51 205.3 136 74.3
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 3.9e-51 204.9 136 75.0
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 5.1e-51 204.5 133 76.7
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 8.7e-51 203.8 136 72.1
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 1.1e-50 203.4 136 74.3
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.9e-50 202.6 136 73.5
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 2.5e-50 202.2 136 73.5
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 3.3e-50 201.8 136 72.8
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 3.3e-50 201.8 138 72.5
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 3.3e-50 201.8 136 79.4
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 4.3e-50 201.4 133 75.2
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 4.3e-50 201.4 136 75.0
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 5.6e-50 201.1 135 73.3
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 9.6e-50 200.3 136 71.3
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.6e-49 199.5 137 72.3
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 1.6e-49 199.5 138 76.8
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 2.1e-49 199.1 137 75.9
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 2.1e-49 199.1 137 73.0
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 2.8e-49 198.7 133 72.9
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 2.8e-49 198.7 137 72.3
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 2.8e-49 198.7 137 72.3
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 3.6e-49 198.4 134 70.9
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 3.6e-49 198.4 136 73.5
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 3.6e-49 198.4 136 76.5
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 4.8e-49 198.0 136 72.1
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 4.8e-49 198.0 136 72.8
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 6.2e-49 197.6 136 73.5
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 6.2e-49 197.6 136 73.5
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.1e-48 196.8 136 70.6
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 1.1e-48 196.8 136 69.9
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.1e-48 196.8 136 69.9
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 1.1e-48 196.8 136 71.3
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 1.8e-48 196.1 138 72.5
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 3.1e-48 195.3 136 72.1
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 3.1e-48 195.3 138 71.0
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 3.1e-48 195.3 138 71.0
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 3.1e-48 195.3 138 71.0
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 4.0e-48 194.9 136 71.3
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 4.0e-48 194.9 139 70.5
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 4.0e-48 194.9 138 70.3
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 5.3e-48 194.5 137 72.3
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 5.3e-48 194.5 137 72.3
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 5.3e-48 194.5 136 72.1
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 6.9e-48 194.1 135 71.9
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 6.9e-48 194.1 136 71.3
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 6.9e-48 194.1 132 72.0
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 9.0e-48 193.7 130 73.8
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 9.0e-48 193.7 136 71.3
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 9.0e-48 193.7 136 67.6
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 1.5e-47 193.0 137 72.3
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 2.0e-47 192.6 137 70.1
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 2.0e-47 192.6 139 69.8
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.0e-47 192.6 138 69.6
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 3.4e-47 191.8 139 69.8
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 5.8e-47 191.0 135 71.1
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 9.9e-47 190.3 138 68.1
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 9.9e-47 190.3 138 75.4
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.3e-46 189.9 135 72.6
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.2e-46 189.1 135 71.1
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 3.8e-46 188.3 143 69.2
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 8.4e-46 187.2 138 66.7
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 8.4e-46 187.2 119 75.6
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.1e-45 186.8 137 68.6
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 1.1e-45 186.8 131 75.6
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 2.4e-45 185.7 132 69.7
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 3.2e-45 185.3 133 73.7
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 3.2e-45 185.3 137 68.6
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 4.2e-45 184.9 132 69.7
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 4.2e-45 184.9 132 66.7
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 7.1e-45 184.1 137 69.3
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 7.1e-45 184.1 138 69.6
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 2.1e-44 182.6 147 66.7
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 1.3e-43 179.9 139 66.9
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 3.0e-43 178.7 137 68.6
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 3.0e-43 178.7 130 67.7
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 6.7e-43 177.6 114 73.7
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 1.9e-42 176.0 146 62.3
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 1.9e-42 176.0 146 62.3
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 1.9e-42 176.0 146 62.3
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 1.9e-42 176.0 146 62.3
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 4.3e-42 174.9 115 72.2
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 4.3e-42 174.9 129 67.4
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 4.3e-42 174.9 129 67.4
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 9.6e-42 173.7 114 72.8
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 1.3e-41 173.3 115 72.2
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 1.6e-41 172.9 114 72.8
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 2.1e-41 172.6 115 71.3
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 2.8e-41 172.2 115 71.3
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 6.2e-41 171.0 143 60.8
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.4e-40 169.9 114 71.1
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 6.9e-40 167.5 108 72.2
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 6.9e-40 167.5 108 72.2
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 6.9e-40 167.5 108 72.2
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 9.0e-40 167.2 108 72.2
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 9.0e-40 167.2 108 72.2
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 4.5e-39 164.9 115 68.7
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 4.9e-38 161.4 108 69.4
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 8.4e-38 160.6 113 72.6
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.1e-37 160.2 133 60.9
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 1.4e-37 159.8 119 63.9
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 4.2e-37 158.3 118 63.6
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 4.2e-37 158.3 119 69.7
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 5.1e-35 151.4 128 60.2
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 2.5e-34 149.1 98 69.4
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 9.6e-34 147.1 137 59.1
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 1.3e-33 146.7 135 53.3
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 1.1e-32 143.7 93 71.0
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 1.4e-29 133.3 84 72.6
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 1.3e-27 126.7 121 55.4
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 1.9e-26 122.9 118 59.3
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 2.8e-25 119.0 110 55.5
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 2.0e-23 112.8 68 82.4
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 1.0e-22 110.5 81 75.3
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 7.2e-21 104.4 136 47.8
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 1.2e-20 103.6 72 65.3
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 2.7e-20 102.4 99 50.5
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 3.9e-19 98.6 75 64.0
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 5.1e-19 98.2 119 43.7
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 8.8e-19 97.4 59 74.6
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 1.7e-17 93.2 74 66.2
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 4.8e-17 91.7 53 79.2
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.1e-16 90.5 59 67.8
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 2.4e-16 89.4 111 41.4
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 1.0e-14 84.0 84 53.6
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 6.5e-14 81.3 105 41.9
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 1.4e-13 80.1 56 71.4
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.4e-11 73.6 80 48.8
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 1.5e-10 70.1 140 40.7
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 7.4e-10 67.8 59 54.2
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 1.8e-08 63.2 77 45.5
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.5e-07 60.1 76 47.4


User provided reference genes

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