Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 4.1e-72 274.6 140 100.0
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.2e-68 263.1 139 96.4
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 3.6e-68 261.5 140 95.7
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 3.6e-68 261.5 140 95.7
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 3.6e-68 261.5 140 95.7
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 6.8e-67 257.3 141 93.6
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 1.2e-63 246.5 136 91.2
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 2.0e-63 245.7 136 89.7
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 1.3e-62 243.0 139 87.1
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 3.0e-62 241.9 136 86.8
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 5.0e-62 241.1 136 86.8
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.0e-62 241.1 136 86.8
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.0e-62 241.1 136 86.8
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 5.0e-62 241.1 136 86.8
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 5.0e-62 241.1 139 86.3
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 5.6e-61 237.7 136 86.0
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 5.6e-61 237.7 129 89.1
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 7.3e-61 237.3 142 85.9
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 9.5e-61 236.9 136 86.0
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 9.5e-61 236.9 136 84.6
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 9.5e-61 236.9 136 84.6
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 9.5e-61 236.9 136 84.6
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 9.5e-61 236.9 136 84.6
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.2e-60 236.5 136 86.0
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 1.2e-60 236.5 132 87.1
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 4.7e-60 234.6 136 84.6
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 6.2e-60 234.2 136 83.1
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 6.2e-60 234.2 137 84.7
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 6.2e-60 234.2 136 84.6
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 8.1e-60 233.8 138 84.8
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 8.1e-60 233.8 136 83.8
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 1.1e-59 233.4 129 89.1
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 1.1e-59 233.4 136 83.1
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 1.1e-59 233.4 137 86.9
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.1e-59 233.4 133 88.0
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.1e-59 233.4 136 85.3
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 1.4e-59 233.0 132 84.8
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 2.3e-59 232.3 148 79.7
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 2.3e-59 232.3 136 83.1
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 3.1e-59 231.9 144 81.9
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 5.2e-59 231.1 136 81.6
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 6.8e-59 230.7 136 85.3
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 6.8e-59 230.7 140 80.0
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 8.9e-59 230.3 136 81.6
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 8.9e-59 230.3 133 84.2
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 8.9e-59 230.3 136 82.4
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.2e-58 229.9 140 82.9
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 1.5e-58 229.6 136 81.6
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 5.8e-58 227.6 136 83.1
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 5.8e-58 227.6 136 83.1
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 5.8e-58 227.6 136 80.9
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 7.5e-58 227.3 140 80.7
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 9.8e-58 226.9 136 83.1
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 9.8e-58 226.9 136 83.1
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.3e-57 226.5 136 82.4
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.3e-57 226.5 136 83.1
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 1.7e-57 226.1 138 81.2
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 1.7e-57 226.1 138 81.2
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 1.7e-57 226.1 136 83.1
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 1.7e-57 226.1 132 82.6
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 2.2e-57 225.7 139 84.2
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 2.2e-57 225.7 140 77.1
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 2.9e-57 225.3 136 81.6
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 2.9e-57 225.3 144 83.3
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 3.7e-57 224.9 136 81.6
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 3.7e-57 224.9 136 81.6
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 4.9e-57 224.6 146 82.2
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 6.4e-57 224.2 140 80.0
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 8.3e-57 223.8 140 80.0
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.9e-56 222.6 159 73.0
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 3.2e-56 221.9 136 80.9
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 5.4e-56 221.1 136 79.4
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 5.4e-56 221.1 136 79.4
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 9.2e-56 220.3 136 81.6
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 1.2e-55 219.9 128 85.2
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.2e-55 219.9 163 73.6
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.2e-55 219.9 136 77.9
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 1.2e-55 219.9 132 80.3
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.2e-55 219.9 136 80.9
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 2.1e-55 219.2 140 73.6
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 3.5e-55 218.4 140 75.0
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 4.6e-55 218.0 127 85.0
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 6.0e-55 217.6 144 75.0
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 7.8e-55 217.2 140 74.3
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 7.8e-55 217.2 123 87.0
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 1.7e-54 216.1 138 74.6
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 1.7e-54 216.1 123 86.2
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 3.9e-54 214.9 142 75.4
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.9e-53 212.6 136 74.3
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.9e-53 212.6 134 78.4
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 2.5e-53 212.2 137 75.9
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 3.3e-53 211.8 123 83.7
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 3.3e-53 211.8 147 71.4
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 4.7e-52 208.0 128 81.2
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 8.1e-52 207.2 131 76.3
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 1.1e-51 206.8 124 83.1
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 1.1e-51 206.8 124 83.1
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.1e-51 206.8 144 75.0
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 1.8e-51 206.1 131 75.6
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 4.0e-51 204.9 128 75.0
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 2.2e-49 199.1 136 75.0
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 2.9e-49 198.7 124 75.0
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 8.4e-49 197.2 131 69.5
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 1.6e-47 193.0 114 85.1
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 2.7e-47 192.2 109 89.0
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.6e-47 191.4 113 85.0
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.0e-46 190.3 109 85.3
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.3e-46 189.9 114 83.3
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.3e-46 189.1 109 86.2
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 5.1e-46 188.0 106 88.7
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 3.3e-45 185.3 109 84.4
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 4.3e-45 184.9 144 68.8
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 3.6e-44 181.8 125 73.6
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 2.6e-42 175.6 113 80.5
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 3.4e-42 175.3 113 76.1
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 4.4e-42 174.9 130 70.8
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 7.1e-40 167.5 140 65.0
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 7.8e-39 164.1 106 71.7
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.3e-38 162.5 101 79.2
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 5.1e-38 161.4 118 69.5
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 8.7e-38 160.6 115 65.2
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 5.6e-37 157.9 139 64.0
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 8.1e-36 154.1 85 90.6
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 1.8e-35 152.9 84 91.7
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 6.9e-35 151.0 181 49.7
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 5.4e-32 141.4 84 86.9
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 5.4e-32 141.4 84 85.7
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 3.5e-31 138.7 86 82.6
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 2.5e-29 132.5 84 81.0
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 1.3e-28 130.2 132 57.6
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.6e-28 129.8 120 59.2
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 4.8e-28 128.3 104 57.7
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.0e-27 125.2 71 83.1
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 5.3e-27 124.8 64 96.9
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.3e-25 120.2 114 50.9
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 4.9e-25 118.2 97 61.9
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 6.4e-25 117.9 101 61.4
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 1.3e-22 110.2 65 78.5
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 3.1e-19 99.0 122 41.0
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 1.2e-18 97.1 52 84.6
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 2.0e-18 96.3 52 84.6
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.2e-17 92.8 55 83.6
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 2.9e-17 92.4 62 74.2
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 2.5e-16 89.4 60 76.7
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.2e-16 89.0 52 75.0
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 9.3e-16 87.4 76 59.2
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 4.6e-15 85.1 55 78.2
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 7.9e-15 84.3 127 38.6
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 1.9e-13 79.7 45 77.8
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.4e-11 73.6 153 37.3
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 5.0e-09 65.1 126 33.3
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 6.1e-07 58.2 55 56.4
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 1.0e-06 57.4 65 49.2


User provided reference genes

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