Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.5e-209 732.6 372 100.0
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 4.6e-147 525.0 298 87.9
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 1.8e-146 523.1 298 87.2
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 5.7e-145 518.1 298 86.2
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.6e-121 439.5 296 78.0
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 8.5e-117 424.5 319 71.2
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 3.9e-101 372.5 315 64.4
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 4.0e-98 362.5 296 63.2
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 4.6e-94 349.0 254 67.3
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 1.0e-93 347.8 266 66.2
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 8.6e-93 344.7 300 60.7
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.5e-92 343.2 267 62.9
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 5.6e-92 342.0 296 61.5
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 9.5e-92 341.3 257 66.9
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 1.8e-90 337.0 290 59.7
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 8.9e-90 334.7 282 59.9
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 2.0e-89 333.6 259 64.9
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 2.0e-89 333.6 270 61.1
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.3e-88 330.9 273 59.0
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.9e-88 329.7 250 62.4
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 1.1e-87 327.8 273 58.2
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 1.9e-87 327.0 255 63.1
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 4.1e-87 325.9 276 60.1
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 1.2e-86 324.3 287 57.1
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.2e-86 324.3 298 58.1
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.2e-86 324.3 298 58.1
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.2e-86 324.3 298 58.1
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 1.2e-86 324.3 243 65.0
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 2.1e-86 323.6 284 57.0
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-86 323.6 298 58.1
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 3.5e-86 322.8 276 59.4
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 3.5e-86 322.8 297 56.9
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.0e-85 321.2 258 59.7
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.3e-85 320.9 274 60.9
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 1.3e-85 320.9 291 56.7
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 2.3e-85 320.1 269 62.8
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 2.3e-85 320.1 293 54.3
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 3.9e-85 319.3 272 59.9
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 5.1e-85 318.9 332 51.2
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.6e-85 318.2 298 57.0
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 8.6e-85 318.2 247 64.0
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 8.6e-85 318.2 268 59.3
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 1.1e-84 317.8 288 56.6
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.5e-84 317.4 275 57.8
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 3.3e-84 316.2 270 60.4
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 4.3e-84 315.8 226 66.8
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.3e-84 315.8 278 59.4
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 4.3e-84 315.8 268 56.7
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 5.6e-84 315.5 269 59.1
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 3.6e-83 312.8 252 62.7
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 3.6e-83 312.8 284 55.6
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 1.8e-82 310.5 258 60.9
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.8e-82 310.5 280 57.1
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 3.1e-82 309.7 275 57.8
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 6.8e-82 308.5 316 53.2
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 8.9e-82 308.1 267 57.7
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.2e-81 307.8 252 58.7
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 1.5e-81 307.4 272 58.1
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 1.5e-81 307.4 284 55.3
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 2.0e-81 307.0 257 59.5
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 2.0e-81 307.0 272 58.1
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.0e-81 307.0 258 58.9
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.0e-81 307.0 258 58.9
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 4.4e-81 305.8 241 61.8
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 2.2e-80 303.5 291 56.0
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 4.9e-80 302.4 253 59.3
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 4.9e-80 302.4 266 57.1
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 8.4e-80 301.6 272 57.0
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 8.4e-80 301.6 272 57.0
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 8.4e-80 301.6 272 57.0
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.4e-79 300.8 257 59.1
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 1.4e-79 300.8 253 58.9
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 1.4e-79 300.8 266 56.8
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 2.4e-79 300.1 253 58.5
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 4.1e-79 299.3 257 58.4
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 4.1e-79 299.3 258 57.8
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 2.7e-78 296.6 238 63.0
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 7.8e-78 295.0 264 56.8
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 1.3e-77 294.3 257 56.0
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 3.0e-77 293.1 275 53.8
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 1.8e-74 283.9 295 51.2
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.4e-74 283.5 291 50.2
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 3.1e-74 283.1 263 53.6
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 3.1e-74 283.1 273 53.8
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 1.2e-73 281.2 263 53.2
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 1.5e-73 280.8 273 54.2
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 2.6e-73 280.0 268 53.7
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 3.4e-73 279.6 263 53.2
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 4.4e-73 279.3 273 53.5
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.7e-72 277.3 267 53.9
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 4.9e-72 275.8 265 55.1
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 2.1e-70 270.4 293 48.8
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.4e-66 257.7 177 69.5
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 9.0e-66 255.0 244 52.0
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 5.8e-65 252.3 232 55.2
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 7.9e-62 241.9 234 48.3
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 3.9e-61 239.6 232 53.9
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.9e-60 237.3 303 44.6
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 9.6e-60 235.0 205 58.5
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 9.6e-60 235.0 175 64.0
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 2.2e-56 223.8 205 55.6
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 9.3e-55 218.4 244 48.8
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 5.1e-53 212.6 290 44.1
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.5e-47 193.7 255 43.1
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 1.6e-43 181.0 189 45.0
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 6.3e-43 179.1 313 37.7
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 2.6e-41 173.7 238 41.2
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 1.5e-33 147.9 237 35.9
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 3.4e-33 146.7 249 33.3
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.7e-32 144.4 99 64.6
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.7e-32 144.4 99 64.6
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 2.2e-32 144.1 154 50.6
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 2.1e-30 137.5 150 49.3
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.8e-29 134.4 138 57.2
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 2.6e-28 130.6 228 36.4
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.7e-28 128.6 149 49.7
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.7e-27 127.9 152 49.3
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 1.8e-26 124.4 95 69.5
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 5.0e-24 116.3 130 49.2
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 6.7e-21 105.9 258 31.4
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 7.4e-20 102.4 248 29.8
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 2.4e-18 97.4 283 27.2
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 3.1e-18 97.1 289 29.4
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.6e-14 83.6 87 50.6
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 2.3e-13 80.9 65 60.0
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 6.7e-13 79.3 76 52.6
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.2e-12 78.6 64 54.7
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 8.2e-11 72.4 70 51.4
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.2e-09 68.6 51 68.6
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 1.9e-07 61.2 33 78.8


User provided reference genes

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