Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 3.7e-246 854.4 413 100.0
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 2.6e-223 778.5 415 91.6
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 1.4e-221 772.7 415 90.4
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.1e-216 755.0 414 88.2
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.3e-211 739.6 415 86.5
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 3.4e-191 671.8 388 83.5
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 7.4e-170 600.9 421 67.7
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.5e-167 593.2 421 67.7
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 5.5e-165 584.7 428 67.1
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 6.7e-163 577.8 421 65.1
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 2.4e-160 569.3 420 65.7
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 9.1e-160 567.4 416 65.4
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.0e-158 563.9 448 62.5
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 2.2e-158 562.8 415 63.9
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 8.5e-158 560.8 416 64.9
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 3.2e-157 558.9 418 66.0
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 5.5e-157 558.1 416 65.6
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 7.9e-156 554.3 415 64.3
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 4.4e-154 548.5 416 61.3
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.1e-152 543.9 421 62.7
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 4.5e-151 538.5 421 61.8
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 1.7e-150 536.6 419 61.6
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 1.7e-150 536.6 415 61.0
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 2.2e-150 536.2 420 60.7
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 2.9e-150 535.8 419 61.6
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 3.8e-150 535.4 417 62.8
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 6.5e-150 534.6 415 62.4
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.9e-149 533.1 421 59.4
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.9e-149 533.1 421 59.4
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.9e-149 533.1 419 63.0
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 8.0e-148 527.7 416 62.5
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.0e-147 527.3 416 62.5
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 1.8e-147 526.6 417 62.1
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.2e-147 525.0 416 61.8
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.1e-146 523.9 422 62.1
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 1.1e-146 523.9 416 61.8
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.0e-146 523.1 416 61.5
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 4.4e-146 521.9 421 58.0
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 7.5e-146 521.2 421 59.6
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 9.7e-146 520.8 420 62.1
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 1.7e-145 520.0 420 58.1
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 2.8e-145 519.2 414 61.6
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 6.3e-145 518.1 415 61.9
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 6.3e-145 518.1 415 60.0
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 6.3e-145 518.1 419 58.0
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 2.4e-144 516.2 416 60.3
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 3.1e-144 515.8 419 58.2
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 1.6e-143 513.5 432 59.5
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 2.0e-143 513.1 413 58.4
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 2.7e-143 512.7 420 59.5
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 4.5e-143 511.9 414 59.7
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 7.7e-143 511.1 416 60.1
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 7.7e-143 511.1 422 59.5
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 1.0e-142 510.8 417 59.5
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.7e-142 510.0 419 59.4
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 6.5e-142 508.1 418 60.8
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.1e-141 507.3 420 60.2
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.1e-141 507.3 419 59.4
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 1.9e-141 506.5 415 58.8
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 5.5e-141 505.0 415 59.5
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 7.2e-141 504.6 419 56.1
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 9.4e-141 504.2 421 59.1
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 1.6e-140 503.4 425 58.1
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.6e-140 503.4 417 59.7
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.1e-140 503.1 418 55.7
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 3.6e-140 502.3 421 58.7
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 4.7e-140 501.9 421 58.7
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.8e-139 500.0 389 62.5
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 4.0e-139 498.8 419 58.0
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 6.8e-139 498.0 421 58.0
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.8e-139 498.0 284 83.8
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 2.0e-138 496.5 468 53.8
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.0e-138 496.5 415 56.6
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.0e-138 496.5 415 56.9
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 2.6e-138 496.1 416 57.7
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 3.4e-138 495.7 426 55.6
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.3e-137 493.8 391 62.1
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.8e-136 490.0 425 56.2
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 5.4e-136 488.4 494 51.6
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 7.0e-136 488.0 425 57.4
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 2.7e-135 486.1 414 58.0
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 5.9e-135 485.0 425 56.9
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 6.5e-134 481.5 363 61.2
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 8.5e-134 481.1 424 55.7
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 4.2e-133 478.8 429 56.9
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 9.4e-133 477.6 405 59.3
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 2.1e-132 476.5 415 53.7
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 4.7e-132 475.3 392 59.2
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 3.0e-131 472.6 522 48.5
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 5.2e-131 471.9 417 56.4
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 6.8e-131 471.5 458 50.9
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 2.8e-129 466.1 467 51.0
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 1.8e-128 463.4 411 53.3
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 5.9e-127 458.4 415 54.7
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 5.9e-127 458.4 524 47.3
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 2.5e-125 453.0 416 54.3
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 9.5e-125 451.1 410 53.2
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 1.4e-123 447.2 421 53.4
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 8.3e-121 438.0 426 51.4
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 8.3e-121 438.0 417 52.5
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 1.1e-120 437.6 414 52.2
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 2.4e-120 436.4 449 48.8
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 2.1e-116 423.3 419 49.4
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 1.8e-115 420.2 448 47.3
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 2.3e-115 419.9 421 49.9
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 2.0e-114 416.8 416 49.8
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 2.0e-114 416.8 416 49.8
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 4.9e-113 412.1 421 48.9
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.1e-112 411.0 341 58.4
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.1e-112 411.0 341 58.4
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 1.9e-112 410.2 421 48.9
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.2e-108 397.5 433 46.9
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 7.5e-106 388.3 431 45.7
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.1e-104 384.4 411 50.9
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 5.4e-104 382.1 420 47.1
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 2.5e-101 373.2 413 46.2
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 1.9e-93 347.1 423 47.0
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 5.6e-93 345.5 236 66.5
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 4.4e-90 335.9 191 83.8
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.3e-84 317.8 170 83.5
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 1.4e-80 304.3 415 41.2
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 5.8e-74 282.3 141 86.5
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 7.6e-74 282.0 157 78.3
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 8.4e-73 278.5 541 34.2
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 3.0e-70 270.0 427 36.1
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.3e-68 264.6 144 84.0
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 3.9e-54 216.5 119 77.3
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 6.1e-47 192.6 91 89.0
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 3.7e-36 156.8 226 40.3
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 4.7e-31 139.8 81 76.5
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.5e-29 134.8 71 94.4
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.6e-29 134.0 73 86.3
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.6e-29 134.0 73 86.3
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 3.7e-28 130.2 74 91.9
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 5.3e-27 126.3 511 26.0
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 4.5e-26 123.2 64 84.4
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 8.0e-23 112.5 59 79.7
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 1.4e-22 111.7 91 52.7
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 2.0e-21 107.8 66 72.7


User provided reference genes

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