Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 2.6e-183 645.2 315 100.0
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.2e-156 556.6 309 87.7
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 6.1e-156 554.3 317 85.8
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.3e-155 553.1 321 85.7
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.6e-132 476.5 297 78.1
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 3.7e-121 438.7 313 66.1
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 5.4e-120 434.9 315 66.0
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.6e-119 433.3 310 63.9
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 7.7e-119 431.0 311 65.3
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 5.0e-118 428.3 310 64.8
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 6.5e-118 427.9 305 65.2
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 6.5e-118 427.9 301 65.8
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 8.6e-118 427.6 302 70.2
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 1.5e-117 426.8 315 64.4
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 2.5e-117 426.0 315 65.1
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.6e-116 423.3 292 68.8
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 2.8e-116 422.5 320 62.8
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 2.8e-116 422.5 311 65.3
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 8.0e-116 421.0 313 63.9
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.0e-116 421.0 313 63.6
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 2.3e-115 419.5 312 65.4
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 2.3e-115 419.5 310 65.2
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 8.8e-115 417.5 303 64.0
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 8.8e-115 417.5 301 64.1
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 1.2e-114 417.2 305 64.6
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 4.4e-114 415.2 313 63.9
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 5.7e-114 414.8 303 64.4
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 3.7e-113 412.1 299 64.2
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.7e-113 412.1 298 67.4
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.7e-113 412.1 325 61.5
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.3e-113 411.4 325 61.5
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 8.3e-113 411.0 298 65.1
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 1.1e-112 410.6 286 66.4
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 2.4e-112 409.5 340 60.0
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 2.4e-112 409.5 304 63.8
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 3.1e-112 409.1 324 60.5
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 7.0e-112 407.9 324 60.8
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.2e-111 407.1 276 68.1
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 3.5e-111 405.6 313 63.9
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 4.5e-111 405.2 309 61.8
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.9e-110 402.5 314 62.7
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.9e-110 402.5 314 62.7
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.9e-110 402.5 314 62.7
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 5.0e-110 401.7 303 63.7
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.5e-109 400.2 315 61.6
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 7.3e-109 397.9 294 63.3
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 7.3e-109 397.9 311 59.8
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 9.5e-109 397.5 303 62.4
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 2.1e-108 396.4 299 62.5
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 4.0e-107 392.1 316 61.7
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 5.2e-107 391.7 307 60.3
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 5.2e-107 391.7 315 59.7
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 6.8e-107 391.3 305 61.0
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 2.6e-106 389.4 305 60.7
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 9.8e-106 387.5 308 59.4
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 8.3e-105 384.4 297 62.0
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 8.3e-105 384.4 308 60.4
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.1e-104 384.0 294 60.5
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 3.2e-104 382.5 397 50.6
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 4.1e-104 382.1 294 59.9
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.6e-103 380.2 299 59.9
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.6e-103 380.2 299 59.9
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.6e-103 380.2 299 59.9
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.6e-103 380.2 299 59.9
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 2.0e-103 379.8 299 59.9
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 3.5e-103 379.0 303 59.4
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 1.7e-102 376.7 297 59.3
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 2.3e-102 376.3 300 58.7
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.3e-102 376.3 218 83.5
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 8.6e-102 374.4 317 58.0
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 1.2e-100 370.5 299 59.9
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 2.1e-100 369.8 299 61.2
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 3.1e-99 365.9 315 58.4
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 2.6e-98 362.8 333 53.8
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 5.8e-98 361.7 312 59.6
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 8.3e-97 357.8 335 53.4
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 8.3e-97 357.8 335 53.4
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 2.4e-96 356.3 315 55.6
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.6e-95 353.6 242 73.6
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.0e-94 350.9 317 55.5
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 1.5e-93 347.1 248 66.5
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 2.8e-92 342.8 310 55.2
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 6.8e-91 338.2 283 59.7
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 5.4e-88 328.6 248 60.9
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 7.1e-88 328.2 330 53.0
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 2.7e-87 326.2 277 59.2
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 1.9e-85 320.1 306 52.9
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.1e-80 304.3 313 50.5
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 9.2e-80 301.2 273 57.1
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 2.3e-78 296.6 305 49.8
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 3.9e-78 295.8 207 65.2
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.1e-77 294.3 274 52.9
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 2.5e-77 293.1 250 59.6
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 9.6e-77 291.2 304 53.3
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 2.8e-76 289.7 219 61.2
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.2e-65 253.4 212 55.2
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.2e-63 247.7 294 45.6
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.6e-63 245.7 201 62.7
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 5.1e-62 242.3 193 63.2
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 2.5e-61 240.0 381 37.3
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 9.0e-59 231.5 232 50.9
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.9e-57 225.7 193 59.1
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.4e-57 224.9 193 59.1
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.4e-56 223.4 181 60.8
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.2e-56 223.0 193 58.5
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.2e-56 222.6 181 60.2
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.1e-56 221.9 181 59.7
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 6.2e-52 208.8 195 53.3
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.0e-49 201.4 193 56.0
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.9e-46 189.5 152 60.5
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.3e-45 186.0 195 51.3
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.6e-44 184.1 288 37.8
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.8e-43 180.6 302 38.7
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 2.6e-42 176.8 109 69.7
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.2e-40 169.5 103 71.8
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 9.4e-40 168.3 103 70.9
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 6.1e-39 165.6 184 47.3
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.4e-35 153.7 103 68.9
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 4.5e-34 149.4 197 43.1
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 6.1e-31 139.0 275 33.5
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.0e-29 134.0 112 58.0
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.4e-29 132.1 112 57.1
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.8e-28 129.4 108 58.3
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 1.1e-27 128.3 284 31.7
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 2.4e-27 127.1 113 57.5
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 5.5e-24 115.9 113 53.1
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.8e-22 110.9 62 75.8
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 1.2e-15 88.2 87 48.3
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 1.6e-15 87.8 78 52.6
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 9.7e-13 78.6 45 73.3
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 3.0e-06 57.0 98 38.8


User provided reference genes

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