Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 1.6e-197 692.6 344 100.0
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 6.2e-61 238.8 127 91.3
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 6.2e-61 238.8 127 91.3
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-60 236.9 124 92.7
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-60 236.9 124 92.7
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-60 236.9 124 92.7
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 5.0e-55 219.2 250 51.6
CAN.G1673.7 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-48 198.0 102 94.1
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.6e-48 197.6 127 77.2
CAN.G31.19 Capsicum annuum HOM05D002660 ORTHO05D003902 8.6e-47 191.8 102 92.2
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.9e-46 190.7 153 69.9
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.9e-46 190.7 153 69.9
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.9e-46 190.7 153 69.9
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 7.3e-46 188.7 153 68.6
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.5e-46 188.3 153 69.3
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.5e-46 188.3 153 69.3
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.5e-46 188.3 153 69.3
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.2e-45 188.0 151 69.5
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.6e-45 187.6 153 69.3
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 8.1e-45 185.3 153 68.6
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.4e-44 184.5 153 68.0
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.8e-44 184.1 179 58.1
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-44 183.7 153 67.3
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.0e-44 183.0 153 68.0
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.0e-44 183.0 153 66.7
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 4.0e-44 183.0 153 68.0
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 5.2e-44 182.6 153 68.0
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 5.2e-44 182.6 153 68.0
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 5.2e-44 182.6 153 68.0
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.2e-44 182.6 153 68.0
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.2e-44 182.6 153 68.0
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 5.2e-44 182.6 153 68.0
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 5.2e-44 182.6 153 68.0
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 5.2e-44 182.6 153 68.0
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 6.8e-44 182.2 153 67.3
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 6.8e-44 182.2 153 67.3
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 6.8e-44 182.2 153 67.3
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.5e-43 181.0 162 64.8
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 3.4e-43 179.9 153 67.3
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.4e-43 179.5 162 63.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 3.7e-42 176.4 148 67.6
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.7e-42 176.4 190 57.9
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 6.4e-42 175.6 159 63.5
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 8.4e-42 175.3 153 66.0
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.1e-41 174.9 125 76.8
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.1e-41 174.9 153 65.4
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 1.6e-40 171.0 153 65.4
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.5e-40 169.9 114 78.1
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 6.6e-39 165.6 164 62.8
PGSC0003DMG400004841 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.9e-38 164.1 95 85.3
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.3e-38 163.3 147 63.9
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 4.9e-34 149.4 131 64.9
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 6.4e-34 149.1 162 56.2
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 3.2e-33 146.7 131 64.1
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 4.2e-33 146.4 149 60.4
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 5.4e-33 146.0 150 59.3
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 7.8e-32 142.1 127 63.8
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 1.3e-29 134.8 130 60.8
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 3.6e-29 133.3 153 53.6
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 4.8e-29 132.9 88 80.7
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 3.8e-26 123.2 142 54.9
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-25 121.7 124 58.1
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 1.9e-25 120.9 68 85.3
Solyc03g063460.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.9e-23 113.2 66 84.8
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 8.7e-23 112.1 135 49.6
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.1e-20 105.1 153 47.7
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 1.8e-20 104.4 113 58.4
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 9.9e-19 98.6 51 92.2
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.4e-17 94.7 102 56.9
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.4e-17 94.7 108 52.8
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 3.5e-16 90.1 153 42.5
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 7.9e-16 89.0 91 58.2
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.0e-15 88.6 51 86.3
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.8e-15 87.8 51 88.2
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.1e-15 86.3 88 60.2
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 8.7e-15 85.5 51 84.3
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-14 85.1 72 66.7
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 1.1e-14 85.1 90 56.7
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 9.6e-14 82.0 91 54.9
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 4.0e-12 76.6 49 75.5
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-11 75.1 51 78.4
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 7.6e-11 72.4 48 72.9
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 1.7e-10 71.2 49 67.3
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 1.7e-10 71.2 49 67.3
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 1.7e-10 71.2 38 89.5
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.7e-10 71.2 38 89.5
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 2.2e-10 70.9 36 88.9
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 65.3
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 2.9e-10 70.5 49 67.3
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 3.8e-10 70.1 49 67.3
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 3.8e-10 70.1 49 67.3
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 4.9e-10 69.7 38 81.6
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 4.9e-10 69.7 40 82.5
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 4.9e-10 69.7 49 65.3
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 4.9e-10 69.7 126 40.5
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 6.5e-10 69.3 49 65.3
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 8.4e-10 68.9 39 79.5
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 1.1e-09 68.6 49 65.3
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 1.1e-09 68.6 49 65.3
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.9e-09 67.8 37 86.5
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 3.2e-09 67.0 49 63.3
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 4.2e-09 66.6 49 63.3
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 4.2e-09 66.6 49 63.3
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.5e-09 66.2 48 66.7
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 5.5e-09 66.2 49 65.3
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 5.5e-09 66.2 49 65.3
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 9.3e-09 65.5 49 65.3
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 9.3e-09 65.5 49 65.3
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 9.3e-09 65.5 49 65.3
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 1.6e-08 64.7 49 61.2
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.6e-08 64.7 49 63.3
RhsimMtG0003800 Rhododendron simsii HOM05D002660 ORTHO05D003902 1.6e-08 64.7 40 75.0
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 1.6e-08 64.7 49 61.2
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 2.1e-08 64.3 49 63.3
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.1e-08 64.3 44 68.2
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.7e-08 63.9 49 61.2
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 2.7e-08 63.9 136 34.6
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 2.7e-08 63.9 49 61.2
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 2.7e-08 63.9 49 61.2
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 6.0e-08 62.8 53 56.6
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 6.0e-08 62.8 38 73.7
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 1.0e-07 62.0 38 71.1
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 1.0e-07 62.0 48 58.3
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 1.0e-07 62.0 38 71.1
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 1.3e-07 61.6 49 59.2
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 1.3e-07 61.6 49 59.2
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 1.8e-07 61.2 84 48.8
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 3.0e-07 60.5 125 38.4
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 3.9e-07 60.1 41 73.2
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 6.7e-07 59.3 49 59.2
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 8.7e-07 58.9 38 76.3
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-06 58.2 39 76.9
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 1.9e-06 57.8 38 68.4
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 1.9e-06 57.8 34 73.5
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.9e-06 57.8 35 80.0
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 3.3e-06 57.0 34 70.6
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 5.7e-06 56.2 48 56.2
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 5.7e-06 56.2 48 56.2


User provided reference genes

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