Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 7.5e-161 570.5 289 100.0
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 7.3e-140 500.7 289 87.9
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.6e-139 499.6 289 87.9
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 4.7e-139 498.0 289 87.5
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 3.9e-133 478.4 285 86.0
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.5e-132 476.5 285 86.0
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 2.4e-127 459.1 289 82.4
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.3e-99 367.1 217 83.9
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 5.8e-97 358.2 218 81.7
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 2.2e-96 356.3 247 72.9
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 1.1e-95 354.0 220 81.4
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 9.3e-95 350.9 253 71.9
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 9.3e-95 350.9 215 80.0
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 1.6e-94 350.1 214 80.8
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.6e-94 350.1 218 79.8
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 2.1e-94 349.7 217 78.8
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 7.9e-94 347.8 218 78.4
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 1.0e-93 347.4 216 79.2
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.0e-93 347.4 219 80.8
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 2.3e-93 346.3 218 78.9
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 3.9e-93 345.5 232 75.4
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 3.9e-93 345.5 227 78.4
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 3.9e-93 345.5 217 78.8
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 5.1e-93 345.1 218 79.4
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 6.7e-93 344.7 233 73.8
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 6.7e-93 344.7 216 79.6
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 6.7e-93 344.7 216 79.6
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 8.7e-93 344.4 207 82.6
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 8.7e-93 344.4 217 79.3
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 1.5e-92 343.6 217 78.8
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 2.5e-92 342.8 218 78.0
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 2.5e-92 342.8 218 78.9
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 3.3e-92 342.4 219 79.9
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.7e-92 341.7 216 78.7
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 5.7e-92 341.7 217 79.7
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 7.4e-92 341.3 216 78.2
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 7.4e-92 341.3 219 77.2
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 7.4e-92 341.3 215 78.6
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 9.7e-92 340.9 227 74.9
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 1.3e-91 340.5 218 77.5
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 1.3e-91 340.5 217 79.7
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.6e-91 340.1 217 80.2
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 2.8e-91 339.3 218 78.4
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 3.7e-91 339.0 213 78.4
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 3.7e-91 339.0 219 76.3
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 4.8e-91 338.6 254 69.7
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 4.8e-91 338.6 254 69.7
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 4.8e-91 338.6 234 70.9
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 6.3e-91 338.2 214 77.6
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.8e-90 336.7 218 77.1
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 3.1e-90 335.9 254 69.7
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 6.9e-90 334.7 289 62.6
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 9.0e-90 334.3 252 69.4
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.0e-90 334.3 257 67.3
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 1.5e-89 333.6 254 68.5
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 2.6e-89 332.8 220 75.5
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 3.4e-89 332.4 238 71.8
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 4.5e-89 332.0 221 76.0
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 4.5e-89 332.0 254 68.1
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.5e-89 332.0 233 72.1
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 5.9e-89 331.6 215 77.2
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 5.9e-89 331.6 218 75.7
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.0e-88 330.9 217 76.5
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.3e-88 330.5 284 63.4
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.7e-88 330.1 218 76.6
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.2e-88 329.7 212 76.9
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.9e-88 329.3 235 71.5
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 3.8e-88 328.9 256 67.6
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 5.0e-88 328.6 222 75.7
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 6.5e-88 328.2 203 80.3
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 6.5e-88 328.2 218 73.9
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 8.5e-88 327.8 254 68.5
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 8.5e-88 327.8 225 75.6
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.4e-87 327.0 216 75.9
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.4e-87 327.0 210 75.7
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 1.9e-87 326.6 221 74.7
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.2e-87 325.5 214 75.2
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 5.5e-87 325.1 214 74.8
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 7.2e-87 324.7 251 68.9
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 9.4e-87 324.3 271 64.9
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 9.4e-87 324.3 210 75.2
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.2e-86 323.9 214 74.8
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.2e-86 323.9 216 76.4
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.6e-86 323.6 230 72.6
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 6.1e-86 321.6 248 67.3
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 6.1e-86 321.6 210 75.2
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 7.9e-86 321.2 212 76.4
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 1.0e-85 320.9 215 74.0
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 3.0e-85 319.3 216 74.5
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 5.1e-85 318.5 212 75.5
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 5.1e-85 318.5 237 70.0
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 5.1e-85 318.5 208 77.4
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 6.7e-85 318.2 214 72.9
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 1.1e-84 317.4 203 76.8
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 2.0e-84 316.6 206 73.3
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.5e-84 316.2 217 74.2
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 3.3e-84 315.8 214 74.3
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 3.3e-84 315.8 205 75.6
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 5.7e-84 315.1 216 74.5
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.7e-83 313.5 208 74.5
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.2e-83 313.2 213 73.7
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 3.7e-83 312.4 177 85.3
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 3.1e-82 309.3 180 82.2
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 4.5e-81 305.4 244 66.4
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 1.4e-79 300.4 219 68.5
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.0e-77 294.3 214 69.6
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 5.7e-76 288.5 170 77.6
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 2.2e-75 286.6 271 56.1
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 2.0e-73 280.0 205 72.2
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 5.7e-68 261.9 273 53.5
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 9.4e-63 244.6 178 62.9
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 8.5e-56 221.5 173 60.7
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 2.4e-50 203.4 135 74.1
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.9e-49 198.7 149 65.8
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.4e-45 187.6 114 79.8
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 1.8e-45 187.2 219 46.1
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.6e-41 174.1 186 50.5
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 6.0e-25 119.0 181 37.0
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 6.2e-22 109.0 77 75.3
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.5e-20 104.4 75 74.7
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.2e-19 100.5 66 75.8
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 1.8e-13 80.9 61 65.6
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 1.3e-08 64.7 185 28.1
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.7e-08 64.3 194 26.8
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 1.7e-08 64.3 176 26.1
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 3.0e-08 63.5 177 23.7
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 3.9e-08 63.2 219 25.1
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 5.1e-08 62.8 194 26.3
CDE04G2678 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 6.6e-08 62.4 182 25.3
Psat6g169400 Pisum sativum HOM05D002933 ORTHO05D007742 6.6e-08 62.4 226 22.6
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 6.6e-08 62.4 179 24.0
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 8.7e-08 62.0 137 32.8
CDE07G0630 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 1.1e-07 61.6 182 25.3
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 1.9e-07 60.8 179 22.9
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 1.9e-07 60.8 179 22.9
Phvul.007G010700 Phaseolus vulgaris HOM05D002933 ORTHO05D009221 1.9e-07 60.8 193 22.3
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 1.9e-07 60.8 193 22.3
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 4.3e-07 59.7 209 24.4
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 4.3e-07 59.7 205 23.9
TPR.G15514 Trifolium pratense HOM05D002933 ORTHO05D007742 4.3e-07 59.7 218 22.9
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 5.6e-07 59.3 211 23.7
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 9.6e-07 58.5 200 26.5
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 1.3e-06 58.2 176 25.6
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.3e-06 58.2 147 29.9
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.3e-06 58.2 187 22.5
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 1.6e-06 57.8 222 22.1
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 1.6e-06 57.8 181 22.1
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 1.6e-06 57.8 181 22.7
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 1.6e-06 57.8 181 22.7
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 1.6e-06 57.8 148 27.0
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 2.1e-06 57.4 187 21.9
VMungo0720G1641 Vigna mungo HOM05D002933 ORTHO05D009221 2.1e-06 57.4 195 23.1
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 2.8e-06 57.0 179 22.9
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 2.8e-06 57.0 218 24.3
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 2.8e-06 57.0 206 23.3
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 3.6e-06 56.6 179 22.9
arahy.Tifrunner.gnm1.ann1.I4CVDG Arachis hypogaea HOM05D002933 ORTHO05D009221 3.6e-06 56.6 220 20.5
arahy.Tifrunner.gnm1.ann1.PIZC5V Arachis hypogaea HOM05D002933 ORTHO05D009221 3.6e-06 56.6 220 20.5
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 3.6e-06 56.6 245 21.2
THA.LOC104824260 Tarenaya hassleriana HOM05D002933 ORTHO05D009221 3.6e-06 56.6 202 23.3
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 4.8e-06 56.2 179 22.3
Lalb_Chr10g0091861 Lupinus albus HOM05D002933 ORTHO05D007742 4.8e-06 56.2 176 25.0
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 4.8e-06 56.2 177 23.7
GSVIVG01016618001 Vitis vinifera HOM05D002933 ORTHO05D007742 4.8e-06 56.2 177 24.3
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 6.2e-06 55.8 210 21.9
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 6.2e-06 55.8 181 23.2
Glyma.20G098500 Glycine max HOM05D002933 ORTHO05D009221 6.2e-06 55.8 206 20.9
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 8.1e-06 55.5 134 29.1
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 8.1e-06 55.5 184 25.0
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 8.1e-06 55.5 148 27.0
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 8.1e-06 55.5 177 23.7
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 8.1e-06 55.5 202 24.8


User provided reference genes

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