Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G502.14 Capsicum annuum HOM05D003467 ORTHO05D004220 5.4e-223 777.3 389 100.0
Solyc00g500228.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 1.9e-111 406.8 252 80.6
Lj2C1229G12 Lonicera japonica HOM05D003467 ORTHO05D004220 2.2e-99 366.7 256 75.0
Peaxi162Scf00197g00034 Petunia axillaris HOM05D003467 ORTHO05D004220 3.2e-98 362.8 243 78.2
Nitab4.5_0009709g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.5e-95 354.0 229 78.6
Nn1g10002 Nelumbo nucifera HOM05D003467 ORTHO05D004220 3.7e-94 349.4 256 72.3
Actinidia34926 Actinidia chinensis HOM05D003467 ORTHO05D004220 4.8e-94 349.0 255 72.2
Nitab4.5_0001796g0090 Nicotiana tabacum HOM05D003467 ORTHO05D004220 6.2e-94 348.6 232 77.6
Solyc00g500103.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 2.4e-93 346.7 228 77.2
ClCG11G007180 Citrullus lanatus HOM05D003467 ORTHO05D004220 4.0e-93 345.9 254 70.9
CANSAT16G0031 Cannabis sativa HOM05D003467 ORTHO05D004220 1.2e-92 344.4 256 71.1
Nitab4.5_0004471g0080 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.4e-90 337.4 218 77.1
CAN.G134.20 Capsicum annuum HOM05D003467 ORTHO05D004220 1.9e-90 337.0 200 83.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.9e-90 337.0 254 69.3
SGA_v2.0_scaffold255G45505 Striga asiatica HOM05D003467 ORTHO05D004220 1.9e-87 327.0 252 70.6
Sopen05g012590 Solanum pennellii HOM05D003467 ORTHO05D004220 3.3e-87 326.2 203 81.8
Rhsim07G0055600 Rhododendron simsii HOM05D003467 ORTHO05D004220 1.6e-86 323.9 259 68.0
Dinv06674 Davidia involucrata HOM05D003467 ORTHO05D004220 1.2e-84 317.8 247 69.6
MBI16_g09480_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 2.6e-84 316.6 295 59.7
SabraMtG0006300 Salix brachista HOM05D003467 ORTHO05D004220 4.5e-84 315.8 264 67.4
Peaxi162Scf00507g00009 Petunia axillaris HOM05D003467 ORTHO05D004220 1.7e-83 313.9 254 68.1
Nitab4.5_0001152g0330 Nicotiana tabacum HOM05D003467 ORTHO05D004220 2.5e-82 310.1 229 72.9
Sed0025530 Sechium edule HOM05D003467 ORTHO05D004220 7.1e-82 308.5 254 65.4
CsaV3_UNG208190 Cucumis sativus L. HOM05D003467 ORTHO05D004220 6.1e-81 305.4 256 64.8
CARHR282930 Cardamine hirsuta HOM05D003467 ORTHO05D004220 1.3e-78 297.7 261 64.0
BcaC08g43711 Brassica carinata HOM05D003467 ORTHO05D004220 3.7e-78 296.2 265 63.4
ATMG00560 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 4.1e-77 292.7 265 62.6
BNapus_Darmor_BZH_scaffold_234p00200 Brassica napus HOM05D003467 ORTHO05D004220 7.7e-76 288.5 261 62.8
BolSC28t60347H Brassica oleracea HOM05D003467 ORTHO05D004220 7.7e-76 288.5 261 62.8
BraSC48t46273Z Brassica rapa HOM05D003467 ORTHO05D004220 7.7e-76 288.5 261 62.8
Sp3g25530 Schrenkiella parvula HOM05D003467 ORTHO05D004220 7.7e-76 288.5 261 62.8
Aa31csc239G20 Aethionema arabicum HOM05D003467 ORTHO05D004220 1.3e-75 287.7 267 62.9
AL3G44370 Arabidopsis lyrata HOM05D003467 ORTHO05D004220 1.7e-75 287.3 261 62.5
unitig_87.g27965 Utricularia gibba HOM05D003467 ORTHO05D004220 5.0e-75 285.8 253 64.8
SHI36699 Sapria himalayana HOM05D003467 ORTHO05D004220 7.2e-74 282.0 257 62.6
AT2G07715 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 1.2e-73 281.2 261 61.7
SHI40343 Sapria himalayana HOM05D003467 ORTHO05D004220 7.9e-73 278.5 256 62.9
SHI37961 Sapria himalayana HOM05D003467 ORTHO05D004220 3.0e-72 276.6 256 62.5
SHI42055 Sapria himalayana HOM05D003467 ORTHO05D004220 6.7e-72 275.4 247 64.4
SHI53305 Sapria himalayana HOM05D003467 ORTHO05D004220 8.8e-72 275.0 255 61.6
Thhalv10013769m.g Eutrema salsugineum HOM05D003467 ORTHO05D004220 9.7e-71 271.6 261 60.2
SHI52008 Sapria himalayana HOM05D003467 ORTHO05D004220 5.3e-69 265.8 236 63.6
Sopen06g007650 Solanum pennellii HOM05D003467 ORTHO05D004220 6.9e-69 265.4 168 79.8
SHI53641 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-67 261.5 256 57.4
CAN.G1.25 Capsicum annuum HOM05D003467 ORTHO05D004220 5.0e-67 259.2 156 82.7
SHI37866 Sapria himalayana HOM05D003467 ORTHO05D004220 2.1e-65 253.8 256 58.6
SHI51351 Sapria himalayana HOM05D003467 ORTHO05D004220 6.1e-65 252.3 256 57.8
SHI52974 Sapria himalayana HOM05D003467 ORTHO05D004220 6.1e-65 252.3 218 65.6
SHI37556 Sapria himalayana HOM05D003467 ORTHO05D004220 6.7e-64 248.8 245 60.0
SHI38192 Sapria himalayana HOM05D003467 ORTHO05D004220 4.4e-63 246.1 247 58.7
SHI52601 Sapria himalayana HOM05D003467 ORTHO05D004220 3.7e-62 243.0 239 59.4
SHI37209 Sapria himalayana HOM05D003467 ORTHO05D004220 4.1e-61 239.6 256 53.9
SHI37886 Sapria himalayana HOM05D003467 ORTHO05D004220 1.2e-60 238.0 245 55.5
SHI38317 Sapria himalayana HOM05D003467 ORTHO05D004220 3.5e-60 236.5 256 57.0
SHI50250 Sapria himalayana HOM05D003467 ORTHO05D004220 4.5e-60 236.1 240 57.5
BolC4t23495H Brassica oleracea HOM05D003467 ORTHO05D004220 2.5e-58 230.3 208 63.5
SHI36967 Sapria himalayana HOM05D003467 ORTHO05D004220 1.2e-57 228.0 166 72.9
MBI05_g05352_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 1.6e-57 227.6 207 60.9
SHI48358 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-57 227.6 213 60.6
CDE02G2877 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 6.7e-56 222.2 442 37.6
SHI52927 Sapria himalayana HOM05D003467 ORTHO05D004220 2.0e-55 220.7 245 55.9
SHI46915 Sapria himalayana HOM05D003467 ORTHO05D004220 3.3e-55 219.9 255 52.9
Ciclev10005397m.g Citrus clementina HOM05D003467 ORTHO05D004220 4.8e-54 216.1 264 52.7
Oeu039080.1 Olea europaea HOM05D003467 ORTHO05D004220 4.8e-54 216.1 159 75.5
SHI36996 Sapria himalayana HOM05D003467 ORTHO05D004220 6.3e-54 215.7 167 68.3
PGSC0003DMG401008792 Solanum tuberosum HOM05D003467 ORTHO05D004220 6.3e-54 215.7 178 65.2
SHI52904 Sapria himalayana HOM05D003467 ORTHO05D004220 8.2e-54 215.3 247 54.3
Nitab4.5_0009703g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.1e-53 214.9 162 68.5
SHI38047 Sapria himalayana HOM05D003467 ORTHO05D004220 2.5e-50 203.8 256 51.2
SHI43968 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-49 201.1 154 70.1
SHI37879 Sapria himalayana HOM05D003467 ORTHO05D004220 3.6e-49 199.9 256 52.3
SHI38898 Sapria himalayana HOM05D003467 ORTHO05D004220 5.2e-48 196.1 254 47.2
C09p21580 Brassica napus HOM05D003467 ORTHO05D004220 3.7e-46 189.9 160 63.8
Nitab4.5_0002635g0050 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.7e-46 189.9 133 74.4
BolC9t55063H Brassica oleracea HOM05D003467 ORTHO05D004220 5.4e-45 186.0 162 63.0
Manes.02G141800 Manihot esculenta HOM05D003467 ORTHO05D004220 1.7e-43 181.0 235 43.8
Sed0002506 Sechium edule HOM05D003467 ORTHO05D004220 2.2e-43 180.6 209 51.7
Aqoxy4G00639 Aquilegia oxysepala HOM05D003467 ORTHO05D004220 2.5e-42 177.2 202 50.5
BraSC77t46654Z Brassica rapa HOM05D003467 ORTHO05D004220 1.6e-41 174.5 174 59.2
SGA_v2.0_scaffold507G52535 Striga asiatica HOM05D003467 ORTHO05D004220 3.6e-41 173.3 167 59.9
Nitab4.5_0012067g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 6.1e-41 172.6 150 62.0
Nitab4.5_0006602g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 8.0e-41 172.2 133 68.4
SHI52074 Sapria himalayana HOM05D003467 ORTHO05D004220 5.2e-40 169.5 238 48.7
SalBow7G2519 Salvia bowleyana HOM05D003467 ORTHO05D004220 6.8e-40 169.1 253 45.5
SalBow7G4829 Salvia bowleyana HOM05D003467 ORTHO05D004220 6.8e-40 169.1 253 45.5
SHI51177 Sapria himalayana HOM05D003467 ORTHO05D004220 2.0e-39 167.5 247 46.6
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 9.8e-39 165.2 239 46.9
SalBow1G2953 Salvia bowleyana HOM05D003467 ORTHO05D004220 6.3e-38 162.5 253 44.7
SalBow1G6425 Salvia bowleyana HOM05D003467 ORTHO05D004220 2.7e-36 157.1 253 43.1
Manes.01G181900 Manihot esculenta HOM05D003467 ORTHO05D004220 4.3e-34 149.8 204 46.6
ATR0661G353 Amborella trichopoda HOM05D003467 ORTHO05D004220 7.2e-34 149.1 318 38.7
Atru.chr10.2291 Acer truncatum HOM05D003467 ORTHO05D004220 1.6e-33 147.9 241 45.6
HanXRQChr14g0459301 Helianthus annuus HOM05D003467 ORTHO05D004220 4.0e-32 143.3 257 39.3
CARHR288290 Cardamine hirsuta HOM05D003467 ORTHO05D004220 3.4e-31 140.2 140 60.7
SHI42501 Sapria himalayana HOM05D003467 ORTHO05D004220 3.4e-31 140.2 156 56.4
Sc16g0002730 Simmondsia chinensis HOM05D003467 ORTHO05D004220 1.3e-30 138.3 253 37.2
SHI44578 Sapria himalayana HOM05D003467 ORTHO05D004220 2.9e-30 137.1 90 75.6
CDE02G4335 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 1.8e-29 134.4 193 45.6
COL.COLO4_18957 Corchorus olitorius HOM05D003467 ORTHO05D004220 7.0e-29 132.5 234 43.2
SHI38986 Sapria himalayana HOM05D003467 ORTHO05D004220 9.2e-29 132.1 90 74.4
SHI47986 Sapria himalayana HOM05D003467 ORTHO05D004220 2.7e-28 130.6 160 52.5
SHI38985 Sapria himalayana HOM05D003467 ORTHO05D004220 3.5e-28 130.2 146 54.8
CAN.G628.86 Capsicum annuum HOM05D007877 ORTHO05D009957 7.8e-28 129.0 89 76.4
CAN.G676.26 Capsicum annuum HOM05D003467 ORTHO05D004220 8.6e-27 125.6 83 74.7
Lsat_1_v5_gn_6_32340 Lactuca sativa HOM05D003467 ORTHO05D004220 4.3e-26 123.2 256 35.9
SHI34612 Sapria himalayana HOM05D003467 ORTHO05D004220 2.8e-25 120.6 75 77.3
SHI54334 Sapria himalayana HOM05D003467 ORTHO05D004220 2.8e-25 120.6 114 59.6
SHI34611 Sapria himalayana HOM05D003467 ORTHO05D004220 1.8e-24 117.9 126 55.6
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.8e-24 117.9 103 59.2
Solyc02g092280.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 3.1e-24 117.1 82 70.7
Migut.N03022 Erythranthe guttata HOM05D003467 ORTHO05D004220 8.9e-24 115.5 237 39.7
EL10Ac6g15561 Beta vulgaris HOM05D003467 ORTHO05D004220 1.2e-23 115.2 253 33.6
ECA238G4840 Erigeron canadensis HOM05D000460 ORTHO05D000333 1.5e-23 114.8 250 37.2
SHI37826 Sapria himalayana HOM05D003467 ORTHO05D004220 4.4e-23 113.2 79 70.9
Hund13975 Selenicereus undatus HOM05D003467 ORTHO05D004220 1.7e-22 111.3 226 35.4
Lsat_1_v5_gn_1_109980 Lactuca sativa HOM05D003467 ORTHO05D004220 2.9e-22 110.5 256 34.4
SalBow1G5399 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.7e-22 110.2 117 57.3
AUR62004052 Chenopodium quinoa HOM05D003467 ORTHO05D004220 6.4e-22 109.4 217 34.6
Nitab4.5_0008578g0020 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.4e-21 108.2 61 86.9
AUR62007567 Chenopodium quinoa HOM05D003467 ORTHO05D004220 2.4e-21 107.5 217 34.1
Lsat_1_v5_gn_2_118881 Lactuca sativa HOM05D003467 ORTHO05D004220 5.4e-21 106.3 257 33.5
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 6.0e-20 102.8 224 36.6
CAN.G1447.9 Capsicum annuum HOM05D003467 ORTHO05D004220 6.0e-20 102.8 55 87.3
SHI38786 Sapria himalayana HOM05D003467 ORTHO05D004220 7.8e-20 102.4 132 53.0
ATR0660G011 Amborella trichopoda HOM05D003467 ORTHO05D004220 1.3e-19 101.7 102 55.9
SHI44577 Sapria himalayana HOM05D003467 ORTHO05D004220 3.3e-18 97.1 99 56.6
SHI43969 Sapria himalayana HOM05D003467 ORTHO05D004220 5.6e-18 96.3 90 60.0
CAN.G267.15 Capsicum annuum HOM05D003467 ORTHO05D004220 1.4e-16 91.7 54 83.3
SHI36997 Sapria himalayana HOM05D003467 ORTHO05D004220 1.4e-16 91.7 86 58.1
SHI04750 Sapria himalayana HOM05D000330 ORTHO05D000209 5.2e-16 89.7 194 36.6
CAN.G1572.11 Capsicum annuum HOM05D003467 ORTHO05D004220 6.8e-16 89.4 54 83.3
CAN.G2141.7 Capsicum annuum HOM05D003467 ORTHO05D004220 6.8e-16 89.4 54 83.3
CAN.G76.4 Capsicum annuum HOM05D003467 ORTHO05D004220 6.8e-16 89.4 54 83.3
ATR0660G010 Amborella trichopoda HOM05D003467 ORTHO05D004220 1.2e-15 88.6 108 50.0
Nitab4.5_0000978g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 2.9e-14 84.0 53 77.4
SGA_v2.0_scaffold48G17845 Striga asiatica HOM05D003467 ORTHO05D004220 3.7e-14 83.6 57 73.7
Ah.04g149890 Amaranthus hybridus HOM05D003467 ORTHO05D004220 6.4e-14 82.8 253 27.7
Lsat_1_v5_gn_5_114100 Lactuca sativa HOM05D003467 ORTHO05D004220 4.1e-13 80.1 108 42.6
Nitab4.5_0004099g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 7.8e-12 75.9 59 69.5
unitig_22.g5752 Utricularia gibba HOM05D003467 ORTHO05D004220 7.8e-12 75.9 70 58.6
Zm00001eb180350 Zea mays HOM05D000540 ORTHO05D000681 5.1e-11 73.2 205 31.7
Lsat_1_v5_gn_8_11861 Lactuca sativa HOM05D003467 ORTHO05D004220 6.6e-11 72.8 168 32.1
Glyma.08G365200 Glycine max HOM05D003467 ORTHO05D004220 4.3e-10 70.1 199 31.2
SHI42502 Sapria himalayana HOM05D003467 ORTHO05D004220 1.2e-09 68.6 80 52.5
Lalb_Chr04g0257431 Lupinus albus HOM05D003467 ORTHO05D004220 1.6e-09 68.2 204 30.9
Ca_04056_v3 Cicer arietinum L. HOM05D003467 ORTHO05D004220 6.2e-09 66.2 206 30.6
Glyma.07G149151 Glycine max HOM05D003467 ORTHO05D004220 8.1e-09 65.9 199 30.7
Lsat_1_v5_gn_4_83901 Lactuca sativa HOM05D003467 ORTHO05D004220 1.8e-08 64.7 191 29.8
Phvul.008G005400 Phaseolus vulgaris HOM05D003467 ORTHO05D004220 1.8e-08 64.7 207 32.4
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.2e-07 62.0 55 60.0
VMungo1383G2739 Vigna mungo HOM05D003467 ORTHO05D004220 2.6e-07 60.8 212 30.2
Lsat_1_v5_gn_7_88480 Lactuca sativa HOM05D003467 ORTHO05D004220 1.3e-06 58.5 194 29.9
Nitab4.5_0004300g0280 Nicotiana tabacum HOM05D003467 ORTHO05D004220 2.9e-06 57.4 46 65.2


User provided reference genes

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