Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G500.28 Capsicum annuum HOM05D013442 ORTHO05D016868 0.0e+00 1203.3 604 100.0
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 7.7e-184 647.9 699 55.2
CAN.G282.36 Capsicum annuum HOM05D013442 ORTHO05D016868 2.8e-170 602.8 618 57.4
CAN.G1021.6 Capsicum annuum HOM05D013442 ORTHO05D016868 6.8e-164 581.6 633 55.8
CAN.G785.11 Capsicum annuum HOM05D013442 ORTHO05D016868 4.4e-147 525.8 589 54.0
CAN.G840.7 Capsicum annuum HOM05D013442 ORTHO05D016868 7.1e-145 518.5 600 53.0
CAN.G472.34 Capsicum annuum HOM05D013442 ORTHO05D016868 9.9e-115 418.3 571 47.6
CAN.G4745.1 Capsicum annuum HOM05D013442 ORTHO05D016868 1.9e-89 334.3 345 54.8
CAN.G1537.8 Capsicum annuum HOM05D013442 ORTHO05D016868 9.8e-46 189.1 149 65.1
PGSC0003DMG400015852 Solanum tuberosum HOM05D001726 ORTHO05D018885 8.9e-23 112.8 220 38.2
Peaxi162Scf01807g00015 Petunia axillaris HOM05D001932 ORTHO05D306439 2.9e-13 81.3 107 47.7
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 4.3e-09 67.4 106 38.7
Peaxi162Scf00540g00061 Petunia axillaris HOM05D001932 ORTHO05D002319 5.6e-09 67.0 103 39.8
Solyc06g076870.4 Solanum lycopersicum HOM05D001932 ORTHO05D002319 7.3e-09 66.6 111 38.7
Sopen06g033260 Solanum pennellii HOM05D001932 ORTHO05D002319 1.3e-08 65.9 111 38.7
Nitab4.5_0001346g0030 Nicotiana tabacum HOM05D001932 ORTHO05D002319 2.1e-08 65.1 99 39.4
Rhsim09G0173200 Rhododendron simsii HOM05D001932 ORTHO05D002319 2.8e-08 64.7 101 39.6
CAN.G394.118 Capsicum annuum HOM05D001932 ORTHO05D002319 3.6e-08 64.3 109 38.5
CAN.G79.36 Capsicum annuum HOM05D001932 ORTHO05D002319 3.6e-08 64.3 99 39.4
PSO832G2984 Papaver somniferum HOM05D001932 ORTHO05D002319 3.6e-08 64.3 102 41.2
GSVIVG01032857001 Vitis vinifera HOM05D001932 ORTHO05D002319 3.6e-08 64.3 102 40.2
SGA_v2.0_scaffold78G25468 Striga asiatica HOM05D001932 ORTHO05D002319 4.8e-08 63.9 101 38.6
Psat7g159120 Pisum sativum HOM05D000127 ORTHO05D000243 6.2e-08 63.5 106 36.8
Glyma.02G255500 Glycine max HOM05D001932 ORTHO05D002319 8.1e-08 63.2 97 38.1
Hma1.2p1_1409F.1_g281570 Hydrangea macrophylla HOM05D001932 ORTHO05D002319 8.1e-08 63.2 101 38.6
PGSC0003DMG400030442 Solanum tuberosum HOM05D001932 ORTHO05D002319 8.1e-08 63.2 111 37.8
FvH4_7g24570 Fragaria vesca HOM05D001932 ORTHO05D002319 1.1e-07 62.8 92 38.0
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.1e-07 62.8 92 38.0
FAN03G2368 Fragaria x ananassa HOM05D001932 ORTHO05D002319 1.1e-07 62.8 92 38.0
FAN03G2493 Fragaria x ananassa HOM05D001932 ORTHO05D002319 1.1e-07 62.8 92 38.0
FAN06G4774 Fragaria x ananassa HOM05D001932 ORTHO05D002319 1.1e-07 62.8 92 38.0
FAN10G2360 Fragaria x ananassa HOM05D001932 ORTHO05D002319 1.1e-07 62.8 92 38.0
Glyma.14G061100 Glycine max HOM05D001932 ORTHO05D002319 1.1e-07 62.8 97 38.1
unitig_60.g25679 Utricularia gibba HOM05D001932 ORTHO05D002319 1.1e-07 62.8 101 39.6
DCAR_032141 Daucus carota HOM05D001932 ORTHO05D002319 1.4e-07 62.4 91 42.9
Dinv34411 Davidia involucrata HOM05D001932 ORTHO05D002319 1.4e-07 62.4 101 38.6
Duzib128G1539 Durio zibethinus HOM05D001932 ORTHO05D002319 1.4e-07 62.4 101 38.6
FvH4_7g24170 Fragaria vesca HOM05D001932 ORTHO05D002319 1.4e-07 62.4 92 38.0
Medtr3g108280 Medicago truncatula HOM05D001932 ORTHO05D002319 1.4e-07 62.4 98 38.8
Thecc.10G023100 Theobroma cacao HOM05D001932 ORTHO05D002319 1.4e-07 62.4 101 40.6
GSVIVG01016313001 Vitis vinifera HOM05D001932 ORTHO05D002319 1.4e-07 62.4 101 38.6
arahy.Tifrunner.gnm1.ann1.AS107A Arachis hypogaea HOM05D001932 ORTHO05D002319 1.8e-07 62.0 97 39.2
COL.COLO4_25633 Corchorus olitorius HOM05D001932 ORTHO05D002319 1.8e-07 62.0 99 39.4
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.8e-07 62.0 92 38.0
Oeu028595.1 Olea europaea HOM05D001932 ORTHO05D002319 1.8e-07 62.0 101 38.6
PGR142G2934 Punica granatum HOM05D001932 ORTHO05D002319 1.8e-07 62.0 100 37.0
RcHm_v2.0_Chr1g0369751 Rosa chinensis HOM05D001932 ORTHO05D002319 1.8e-07 62.0 92 38.0
VMungo1215G3444 Vigna mungo HOM05D001932 ORTHO05D002319 1.8e-07 62.0 97 38.1
arahy.Tifrunner.gnm1.ann1.UK1KTC Arachis hypogaea HOM05D001932 ORTHO05D002319 2.4e-07 61.6 97 39.2
CDE08G0393 Ceratophyllum demersum HOM05D001932 ORTHO05D002319 2.4e-07 61.6 99 40.4
Duzib114G0066 Durio zibethinus HOM05D001932 ORTHO05D002319 2.4e-07 61.6 101 37.6
Thhalv10016954m.g Eutrema salsugineum HOM05D001932 ORTHO05D002319 2.4e-07 61.6 99 38.4
FvH4_5g34410 Fragaria vesca HOM05D001932 ORTHO05D002319 2.4e-07 61.6 92 37.0
FAN18G1624 Fragaria x ananassa HOM05D001932 ORTHO05D002319 2.4e-07 61.6 92 37.0
Gohir.A05G316000 Gossypium hirsutum HOM05D001932 ORTHO05D002319 2.4e-07 61.6 101 39.6
Manes.07G127000 Manihot esculenta HOM05D001932 ORTHO05D002319 2.4e-07 61.6 105 39.0
TAR369G0303 Trochodendron aralioides HOM05D001932 ORTHO05D002319 2.4e-07 61.6 101 38.6
arahy.Tifrunner.gnm1.ann1.VEJ0KU Arachis hypogaea HOM05D001932 ORTHO05D002319 3.1e-07 61.2 97 39.2
Dinv28628 Davidia involucrata HOM05D001932 ORTHO05D002319 3.1e-07 61.2 101 38.6
Lsat_1_v5_gn_2_121360 Lactuca sativa HOM05D001932 ORTHO05D002319 3.1e-07 61.2 102 39.2
Oeu062732.1 Olea europaea HOM05D001932 ORTHO05D002319 3.1e-07 61.2 103 40.8
SEGI_01689 Sequoiadendron giganteum HOM05D001932 ORTHO05D002319 3.1e-07 61.2 97 37.1
CiPaw.01G296800 Carya illinoinensis HOM05D001932 ORTHO05D002319 4.0e-07 60.8 101 40.6
Migut.H01132 Erythranthe guttata HOM05D001932 ORTHO05D002319 4.0e-07 60.8 94 39.4
Lalb_Chr18g0052661 Lupinus albus HOM05D001932 ORTHO05D002319 4.0e-07 60.8 102 36.3
Nitab4.5_0000010g0250 Nicotiana tabacum HOM05D001932 ORTHO05D002319 4.0e-07 60.8 99 36.4
Nitab4.5_0005502g0040 Nicotiana tabacum HOM05D001932 ORTHO05D002319 4.0e-07 60.8 97 37.1
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 4.0e-07 60.8 84 42.9
Rhsim03G0141500 Rhododendron simsii HOM05D001932 ORTHO05D002319 4.0e-07 60.8 99 39.4
AagrBONN_evm.TU.Sc2ySwM_368.2135 Anthoceros agrestis HOM05D001932 ORTHO05D002319 5.3e-07 60.5 99 37.4
Manes.10G016100 Manihot esculenta HOM05D001932 ORTHO05D002319 5.3e-07 60.5 99 38.4
Phvul.003G020600 Phaseolus vulgaris HOM05D001932 ORTHO05D002319 5.3e-07 60.5 97 38.1
HPP92_018196 Vanilla planifolia HOM05D001932 ORTHO05D002319 5.3e-07 60.5 124 34.7
Zm00001eb173180 Zea mays HOM05D001932 ORTHO05D002319 5.3e-07 60.5 86 43.0
AT2G40010 Arabidopsis thaliana HOM05D001932 ORTHO05D002319 6.9e-07 60.1 99 36.4
Cpa.g.sc19.207 Carica papaya HOM05D001932 ORTHO05D002319 6.9e-07 60.1 99 38.4
Cc02_g06780 Coffea canephora HOM05D001932 ORTHO05D002319 6.9e-07 60.1 99 38.4
FAN01G1712 Fragaria x ananassa HOM05D001932 ORTHO05D002319 6.9e-07 60.1 92 37.0
Glyma.11G228200 Glycine max HOM05D001932 ORTHO05D002319 6.9e-07 60.1 97 39.2
Medtr5g082180 Medicago truncatula HOM05D001932 ORTHO05D002319 6.9e-07 60.1 97 37.1
PSO339G1475 Papaver somniferum HOM05D001932 ORTHO05D002319 6.9e-07 60.1 91 40.7
PSO384G5058 Papaver somniferum HOM05D001932 ORTHO05D002319 6.9e-07 60.1 91 40.7
TAR369G0912 Trochodendron aralioides HOM05D001932 ORTHO05D002319 6.9e-07 60.1 101 37.6
BolC3t15046H Brassica oleracea HOM05D001932 ORTHO05D002319 9.0e-07 59.7 102 36.3
Gohir.D04G067000 Gossypium hirsutum HOM05D001932 ORTHO05D002319 9.0e-07 59.7 101 37.6
Psat2g033920 Pisum sativum HOM05D001932 ORTHO05D002319 9.0e-07 59.7 101 38.6
unitig_0.g235 Utricularia gibba HOM05D001932 ORTHO05D002319 9.0e-07 59.7 91 40.7
Zm00001eb261840 Zea mays HOM05D001932 ORTHO05D002319 9.0e-07 59.7 86 41.9
MSTRG.27340 Avicennia marina HOM05D001932 ORTHO05D002319 1.2e-06 59.3 120 35.0
Gorai.013G019000 Gossypium raimondii HOM05D001932 ORTHO05D002319 1.2e-06 59.3 97 37.1
Nn2g11426 Nelumbo nucifera HOM05D001932 ORTHO05D002319 1.2e-06 59.3 101 36.6
Nitab4.5_0004582g0070 Nicotiana tabacum HOM05D064439 ORTHO05D043414 1.2e-06 59.3 60 46.7
Potri.010G191200 Populus trichocarpa HOM05D001932 ORTHO05D002319 1.2e-06 59.3 99 37.4
BraA03t11471Z Brassica rapa HOM05D001932 ORTHO05D002319 1.5e-06 58.9 102 36.3
Ca_15690_v3 Cicer arietinum L. HOM05D001932 ORTHO05D002319 1.5e-06 58.9 97 37.1
Migut.G00500 Erythranthe guttata HOM05D001932 ORTHO05D002319 1.5e-06 58.9 91 39.6
Gohir.D10G246000 Gossypium hirsutum HOM05D001932 ORTHO05D002319 1.5e-06 58.9 99 38.4
Gohir.D13G017100 Gossypium hirsutum HOM05D001932 ORTHO05D002319 1.5e-06 58.9 105 37.1
Gorai.011G283700 Gossypium raimondii HOM05D001932 ORTHO05D002319 1.5e-06 58.9 99 38.4
Gorai.012G076000 Gossypium raimondii HOM05D001932 ORTHO05D002319 1.5e-06 58.9 99 37.4
Pp3c11_3700 Physcomitrium patens HOM05D001932 ORTHO05D002319 1.5e-06 58.9 101 40.6
Psat5g026480 Pisum sativum HOM05D001932 ORTHO05D002319 1.5e-06 58.9 90 40.0
Sopen03g024650 Solanum pennellii HOM05D001726 ORTHO05D018885 1.5e-06 58.9 81 46.9
SGA_v2.0_scaffold60G21019 Striga asiatica HOM05D001932 ORTHO05D002319 1.5e-06 58.9 96 38.5
ClCG07G004060 Citrullus lanatus HOM05D001932 ORTHO05D002319 2.0e-06 58.5 101 36.6
Migut.F00697 Erythranthe guttata HOM05D001932 ORTHO05D002319 2.0e-06 58.5 91 38.5
Gohir.A10G233700 Gossypium hirsutum HOM05D001932 ORTHO05D002319 2.0e-06 58.5 99 37.4
Lalb_Chr04g0250681 Lupinus albus HOM05D001932 ORTHO05D002319 2.0e-06 58.5 97 35.1
PSO801G0475 Papaver somniferum HOM05D001932 ORTHO05D002319 2.0e-06 58.5 101 37.6
THA.LOC104810151 Tarenaya hassleriana HOM05D001932 ORTHO05D002319 2.0e-06 58.5 99 37.4
TAR633G2488 Trochodendron aralioides HOM05D001932 ORTHO05D002319 2.0e-06 58.5 99 36.4
BcaC01g05447 Brassica carinata HOM05D001932 ORTHO05D002319 2.6e-06 58.2 102 35.3
ECA232G0961 Erigeron canadensis HOM05D001932 ORTHO05D002319 2.6e-06 58.2 102 39.2
Eucgr.G03042 Eucalyptus grandis HOM05D001932 ORTHO05D002319 2.6e-06 58.2 101 36.6
Rhsim01G0236000 Rhododendron simsii HOM05D001932 ORTHO05D002319 2.6e-06 58.2 101 36.6
Sabra05G0133200 Salix brachista HOM05D001932 ORTHO05D002319 2.6e-06 58.2 99 37.4
Sabra08G0048500 Salix brachista HOM05D001932 ORTHO05D002319 2.6e-06 58.2 99 37.4
Hund13838 Selenicereus undatus HOM05D001932 ORTHO05D002319 2.6e-06 58.2 92 40.2
Sc11g0007200 Simmondsia chinensis HOM05D001932 ORTHO05D002319 2.6e-06 58.2 92 40.2
THA.LOC104810080 Tarenaya hassleriana HOM05D001932 ORTHO05D002319 2.6e-06 58.2 91 38.5
Atru.chr12.5 Acer truncatum HOM05D001932 ORTHO05D002319 3.4e-06 57.8 91 38.5
AT3G09200 Arabidopsis thaliana HOM05D001932 ORTHO05D002319 3.4e-06 57.8 101 36.6
BcaB04g18546 Brassica carinata HOM05D001932 ORTHO05D002319 3.4e-06 57.8 97 37.1
CAN.G500.75 Capsicum annuum HOM05D001932 ORTHO05D002319 3.4e-06 57.8 105 36.2
CDE02G3072 Ceratophyllum demersum HOM05D001932 ORTHO05D002319 3.4e-06 57.8 92 39.1
Lalb_Chr10g0105081 Lupinus albus HOM05D001932 ORTHO05D002319 3.4e-06 57.8 94 37.2
Prupe.1G173900 Prunus persica HOM05D001932 ORTHO05D002319 3.4e-06 57.8 99 37.4
VMungo0647G1456 Vigna mungo HOM05D001932 ORTHO05D002319 3.4e-06 57.8 97 35.1
Atru.chr8.2074 Acer truncatum HOM05D001932 ORTHO05D002319 4.5e-06 57.4 98 37.8
BcaC09g48055 Brassica carinata HOM05D001932 ORTHO05D002319 4.5e-06 57.4 101 37.6
Cpa.g.sc112.41 Carica papaya HOM05D001932 ORTHO05D002319 4.5e-06 57.4 101 35.6
CiPaw.02G191000 Carya illinoinensis HOM05D001932 ORTHO05D002319 4.5e-06 57.4 91 39.6
MELO3C025168.2 Cucumis melo HOM05D001932 ORTHO05D002319 4.5e-06 57.4 91 39.6
CsaV3_5G008980 Cucumis sativus L. HOM05D001932 ORTHO05D002319 4.5e-06 57.4 91 39.6
HanXRQChr13g0399621 Helianthus annuus HOM05D001932 ORTHO05D002319 4.5e-06 57.4 99 38.4
HanXRQChr17g0567801 Helianthus annuus HOM05D001932 ORTHO05D002319 4.5e-06 57.4 99 38.4
MBI18_g36457_MAGBIO Magnolia biondii HOM05D001932 ORTHO05D002319 4.5e-06 57.4 101 39.6
Nitab4.5_0000802g0160 Nicotiana tabacum HOM05D001932 ORTHO05D002319 4.5e-06 57.4 94 37.2
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 4.5e-06 57.4 105 37.1
Potri.008G066300 Populus trichocarpa HOM05D001932 ORTHO05D002319 4.5e-06 57.4 91 37.4
SGA_v2.0_scaffold44G16704 Striga asiatica HOM05D001932 ORTHO05D002319 4.5e-06 57.4 96 38.5
Aa31LG3G4570 Aethionema arabicum HOM05D001932 ORTHO05D002319 5.8e-06 57.0 90 40.0
Aa31LG5G19590 Aethionema arabicum HOM05D001932 ORTHO05D002319 5.8e-06 57.0 97 37.1
C03p43790 Brassica napus HOM05D001932 ORTHO05D002319 5.8e-06 57.0 101 37.6
BolC1t05472H Brassica oleracea HOM05D001932 ORTHO05D002319 5.8e-06 57.0 101 37.6
CSS0018186 Camellia sinensis var. sinensis HOM05D001932 ORTHO05D002319 5.8e-06 57.0 101 35.6
CsaV3_1G036120 Cucumis sativus L. HOM05D001932 ORTHO05D002319 5.8e-06 57.0 91 39.6
LjContig00357g0010363 Lotus japonicus HOM05D001932 ORTHO05D002319 5.8e-06 57.0 97 37.1
MD01G1148900 Malus domestica HOM05D001932 ORTHO05D002319 5.8e-06 57.0 93 36.6
MD07G1215800 Malus domestica HOM05D001932 ORTHO05D002319 5.8e-06 57.0 93 36.6
Psat5g297920 Pisum sativum HOM05D001932 ORTHO05D002319 5.8e-06 57.0 91 37.4
Sabra10G0147200 Salix brachista HOM05D001932 ORTHO05D002319 5.8e-06 57.0 99 37.4
SalBow6G2709 Salvia bowleyana HOM05D001932 ORTHO05D002319 5.8e-06 57.0 91 38.5
Solyc09g091520.2 Solanum lycopersicum HOM05D001932 ORTHO05D002319 5.8e-06 57.0 98 37.8
SGA_v2.0_scaffold60G21022 Striga asiatica HOM05D001932 ORTHO05D002319 5.8e-06 57.0 96 38.5
vmacro14589 Vaccinium macrocarpon HOM05D001932 ORTHO05D002319 5.8e-06 57.0 109 35.8
VMungo1383G2638 Vigna mungo HOM05D001932 ORTHO05D002319 5.8e-06 57.0 102 33.3
BcaC01g04215 Brassica carinata HOM05D001932 ORTHO05D002319 7.6e-06 56.6 101 37.6
A03p36130 Brassica napus HOM05D001932 ORTHO05D002319 7.6e-06 56.6 101 37.6
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 7.6e-06 56.6 101 37.6
BraA03t12784Z Brassica rapa HOM05D001932 ORTHO05D002319 7.6e-06 56.6 101 37.6
Lalb_Chr17g0346681 Lupinus albus HOM05D001932 ORTHO05D002319 7.6e-06 56.6 94 36.2
PSO339G1729 Papaver somniferum HOM05D001932 ORTHO05D002319 7.6e-06 56.6 92 39.1
Phvul.002G074600 Phaseolus vulgaris HOM05D001932 ORTHO05D002319 7.6e-06 56.6 99 35.4
PGSC0003DMG401011292 Solanum tuberosum HOM05D000018 ORTHO05D008577 7.6e-06 56.6 48 64.6
CiPaw.13G079700 Carya illinoinensis HOM05D001932 ORTHO05D002319 9.9e-06 56.2 99 36.4
Ciclev10032141m.g Citrus clementina HOM05D001932 ORTHO05D002319 9.9e-06 56.2 99 36.4
Duzib168G1514 Durio zibethinus HOM05D001932 ORTHO05D002319 9.9e-06 56.2 95 35.8
Glyma.18G029200 Glycine max HOM05D001932 ORTHO05D002319 9.9e-06 56.2 86 38.4
Manes.07G025600 Manihot esculenta HOM05D001829 ORTHO05D007093 9.9e-06 56.2 71 43.7
Os12g0133050 Oryza sativa ssp. japonica HOM05D001932 ORTHO05D002319 9.9e-06 56.2 99 37.4
Sed0002408 Sechium edule HOM05D001932 ORTHO05D002319 9.9e-06 56.2 86 39.5


User provided reference genes

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