Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 0.0e+00 1187.6 690 100.0
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 5.7e-311 1070.5 745 86.3
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.0e-309 1066.2 745 85.9
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.8e-309 1065.4 745 86.0
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.8e-307 1058.1 781 81.6
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.3e-301 1038.5 781 71.4
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.1e-279 966.5 793 76.0
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 3.5e-257 891.7 771 70.2
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.1e-250 870.2 794 58.4
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 9.6e-247 857.1 763 70.5
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 4.0e-245 851.7 764 70.5
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 4.2e-242 841.6 747 69.2
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 4.6e-241 838.2 843 63.5
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 3.9e-240 835.1 745 70.3
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 5.6e-239 831.2 755 69.5
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 3.4e-236 822.0 753 69.7
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 9.9e-236 820.5 640 66.4
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.3e-235 820.1 749 69.2
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 8.4e-235 817.4 774 65.8
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 3.2e-234 815.5 692 70.8
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.1e-231 807.0 790 58.7
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 4.0e-229 798.5 752 68.5
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.2e-228 797.0 752 68.6
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 3.8e-227 792.0 726 69.1
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-226 790.0 744 69.4
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 2.1e-225 786.2 745 67.4
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 7.9e-225 784.3 753 67.5
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 2.3e-224 782.7 741 67.6
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 2.3e-224 782.7 750 67.7
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 3.0e-224 782.3 748 68.2
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 5.1e-224 781.6 646 65.9
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 5.1e-224 781.6 743 67.0
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 8.7e-224 780.8 754 67.8
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 8.2e-222 774.2 748 67.5
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 8.2e-222 774.2 762 66.1
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.1e-221 773.9 755 67.5
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 1.1e-221 773.9 739 67.8
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 2.0e-220 769.6 763 65.5
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.2e-219 766.1 751 66.7
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 6.5e-219 764.6 755 67.5
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 5.5e-218 761.5 763 66.4
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.6e-217 760.0 749 66.2
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 7.9e-217 757.7 759 64.6
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 3.9e-216 755.4 775 65.4
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 5.1e-216 755.0 748 66.6
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 4.3e-215 751.9 757 63.4
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 5.7e-215 751.5 740 65.9
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 5.7e-215 751.5 753 66.0
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 5.7e-215 751.5 753 66.0
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 1.3e-214 750.4 745 66.4
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.6e-214 750.0 708 68.4
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-214 749.6 747 67.1
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-213 747.3 747 66.9
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-213 746.9 748 67.0
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.8e-213 746.5 748 67.0
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 3.1e-213 745.7 758 65.8
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 3.4e-212 742.3 769 63.8
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.3e-211 740.3 748 65.6
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.7e-211 740.0 763 64.5
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.9e-211 739.2 752 64.8
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 8.5e-211 737.6 754 65.1
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 2.5e-210 736.1 748 65.1
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.2e-210 735.3 752 64.8
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.6e-209 733.4 763 63.8
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.4e-208 730.3 750 65.1
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.0e-208 729.2 752 64.6
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 8.8e-208 727.6 752 64.5
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.1e-207 727.2 748 64.7
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.0e-207 726.5 777 63.1
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 5.7e-207 724.9 767 64.1
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 9.7e-207 724.2 748 64.7
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.3e-206 723.8 839 60.0
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 4.8e-206 721.8 748 63.8
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 5.3e-205 718.4 758 64.4
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.2e-204 717.2 748 63.8
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-203 713.8 745 64.6
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 3.8e-203 712.2 750 65.9
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 6.5e-203 711.4 758 63.9
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 1.9e-202 709.9 778 61.6
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 2.5e-202 709.5 750 65.7
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 3.2e-202 709.1 778 55.9
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 4.2e-202 708.8 744 64.8
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 5.5e-202 708.4 745 64.2
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 9.4e-202 707.6 799 61.2
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 5.1e-200 701.8 760 64.1
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 2.0e-199 699.9 744 64.5
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 4.4e-199 698.7 764 62.3
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 4.4e-199 698.7 687 66.4
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 7.4e-199 698.0 747 64.3
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.3e-198 697.2 745 64.3
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.7e-198 696.8 753 64.0
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 3.7e-198 695.7 787 60.5
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 8.2e-198 694.5 753 63.1
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.8e-197 693.3 648 60.0
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 5.3e-197 691.8 747 63.6
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 7.7e-196 688.0 745 64.2
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.5e-194 682.9 748 63.2
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-194 682.9 731 62.4
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 4.7e-193 678.7 746 62.7
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.1e-193 678.3 771 50.7
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 2.5e-186 656.4 786 58.4
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.5e-186 656.4 836 58.3
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 6.8e-184 648.3 748 62.3
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 6.5e-179 631.7 746 59.2
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.4e-165 587.4 748 54.9
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.2e-164 584.3 706 59.9
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.6e-159 566.6 721 56.0
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 3.2e-157 559.7 559 58.5
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.1e-154 551.2 543 69.8
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 3.7e-150 536.2 765 52.0
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.1e-146 524.6 537 57.4
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.1e-141 508.1 769 51.2
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 8.1e-137 491.9 769 50.7
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.1e-136 490.0 535 52.0
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 4.0e-136 489.6 756 53.3
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.7e-132 476.9 452 56.2
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 1.9e-130 470.7 760 51.4
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 4.0e-112 409.8 440 51.6
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.8e-105 387.1 635 41.9
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.2e-103 381.7 362 77.1
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 6.5e-102 375.9 362 76.5
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 4.2e-101 373.2 403 70.5
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 4.2e-93 346.7 304 85.2
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.8e-88 331.3 380 49.2
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.0e-86 325.5 345 55.4
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 7.2e-77 292.7 362 49.4
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 3.7e-73 280.4 200 68.5
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-66 258.8 180 72.2
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-64 250.8 289 51.2
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.9e-61 241.5 438 38.1
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 4.1e-56 223.8 863 36.0
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.7e-55 221.1 737 30.1
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.5e-53 212.6 181 61.9
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 8.9e-51 206.1 181 60.8
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 9.8e-50 202.6 149 69.8
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 3.9e-46 190.7 432 33.6
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.5e-45 186.0 181 54.7
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.6e-39 167.2 98 84.7
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 7.8e-39 166.4 688 27.0
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-34 151.4 92 79.3
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-33 148.3 82 89.0
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-31 142.1 82 82.9
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-30 138.7 84 82.1
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.1e-29 136.0 155 51.6
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-26 125.9 67 85.1
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-24 119.4 108 60.2
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-24 119.0 93 67.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.2e-23 115.9 70 80.0
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 2.1e-23 115.2 164 43.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-22 112.5 61 86.9
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 1.3e-22 112.5 115 57.4
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-22 111.3 61 85.2
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 2.5e-21 108.2 155 91.0
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-19 102.8 119 48.7
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 3.1e-19 101.3 154 89.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-18 99.4 60 78.3
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 5.8e-18 97.1 119 47.9
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.1e-16 92.8 122 47.5
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 3.3e-13 81.3 90 50.0
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 7.3e-13 80.1 225 31.6
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.0e-10 72.0 37 91.9
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.6e-10 70.1 36 91.7
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 7.6e-10 70.1 37 89.2
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-09 69.3 91 44.0
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 6.4e-09 67.0 37 86.5
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 8.4e-09 66.6 133 42.1
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 1.9e-08 65.5 37 81.1
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.4e-08 65.1 60 60.0
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 7.1e-08 63.5 37 78.4
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 6.0e-07 60.5 43 67.4
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 3.9e-06 57.8 66 45.5
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.9e-06 57.8 79 40.5


User provided reference genes

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