Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 0.0e+00 1468.0 973 100.0
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 0.0e+00 1192.6 975 83.6
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 0.0e+00 1159.1 976 82.6
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 6.2e-284 981.1 1036 72.4
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.3e-276 956.8 832 83.1
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 2.4e-272 942.6 1057 68.7
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 9.0e-267 924.1 980 69.1
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 2.5e-176 623.6 994 53.0
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 6.4e-172 609.0 1011 55.8
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 4.3e-168 596.3 660 57.0
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 2.4e-163 580.5 993 47.6
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 1.3e-156 558.1 1035 51.7
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 1.9e-155 554.3 663 53.2
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 4.2e-155 553.1 1014 45.3
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 1.2e-154 551.6 1002 48.6
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 3.9e-153 546.6 661 53.0
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 1.6e-151 541.2 1011 47.8
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 4.5e-149 533.1 717 49.2
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 5.8e-149 532.7 998 50.7
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.2e-148 530.8 991 48.6
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 2.4e-147 527.3 667 52.8
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 9.3e-147 525.4 996 49.7
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 2.7e-146 523.9 996 44.1
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 1.3e-145 521.5 723 49.8
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 2.5e-144 517.3 666 51.1
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 5.6e-144 516.2 586 55.6
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 1.3e-140 505.0 717 47.7
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 2.9e-140 503.8 733 47.1
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 2.5e-139 500.7 728 46.0
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 2.5e-139 500.7 734 46.7
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 3.2e-139 500.4 733 46.5
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 5.5e-139 499.6 721 47.7
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 2.5e-136 490.7 750 46.9
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.6e-135 488.0 1013 50.2
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 2.8e-135 487.3 886 49.5
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 3.7e-135 486.9 733 45.8
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 3.7e-135 486.9 537 54.4
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 6.3e-135 486.1 1005 43.7
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 3.1e-134 483.8 733 46.0
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 4.1e-134 483.4 1022 48.4
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 3.2e-131 473.8 661 48.6
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.6e-130 471.5 989 49.0
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 2.3e-129 467.6 992 47.5
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.5e-128 464.9 736 45.7
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 3.7e-127 460.3 996 41.8
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 3.7e-127 460.3 666 48.2
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 4.1e-126 456.8 1009 47.0
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 6.9e-126 456.1 1007 44.0
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 2.6e-125 454.1 678 46.8
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 1.9e-123 448.0 1034 41.9
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 2.7e-122 444.1 709 45.1
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 3.6e-122 443.7 986 43.1
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 4.7e-122 443.4 1002 43.5
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 8.8e-121 439.1 599 49.1
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 1.3e-116 425.2 1026 43.4
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 8.5e-116 422.5 744 42.7
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 1.1e-115 422.2 725 44.0
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 8.0e-114 416.0 868 53.9
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 1.0e-113 415.6 654 46.2
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 1.0e-113 415.6 653 45.8
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 1.8e-113 414.8 655 46.0
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 2.3e-113 414.5 722 43.6
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 5.2e-113 413.3 712 43.7
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 8.2e-111 406.0 720 43.1
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 4.1e-110 403.7 720 43.8
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.2e-109 402.1 762 41.7
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 2.5e-107 394.4 643 43.7
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 2.5e-107 394.4 572 47.6
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 7.2e-107 392.9 748 41.6
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 9.4e-107 392.5 846 48.7
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 3.6e-106 390.6 699 42.3
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 6.7e-105 386.3 869 42.8
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 2.0e-104 384.8 828 47.6
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 6.3e-103 379.8 850 47.9
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 4.1e-102 377.1 560 48.2
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 5.3e-102 376.7 836 45.6
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 7.7e-101 372.9 574 46.0
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 1.2e-98 365.5 838 51.0
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 3.6e-98 364.0 501 49.9
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 3.6e-98 364.0 682 41.9
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 1.1e-94 352.4 785 38.6
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 5.4e-94 350.1 493 48.7
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 1.6e-93 348.6 526 46.8
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 1.1e-91 342.4 577 43.5
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 1.7e-87 328.6 733 38.1
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.8e-81 308.5 369 53.1
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 6.4e-79 300.1 366 50.8
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 1.6e-77 295.4 763 33.4
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 5.0e-76 290.4 638 49.5
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 6.8e-73 280.0 529 42.2
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 2.9e-71 274.6 532 41.7
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 7.0e-70 270.0 525 40.8
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 9.2e-70 269.6 854 43.2
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 1.2e-69 269.2 526 41.3
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 7.8e-69 266.5 318 51.9
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 2.0e-64 251.9 999 32.7
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 2.0e-64 251.9 579 39.7
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 1.9e-62 245.4 712 47.1
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 5.8e-56 223.8 713 33.1
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.3e-52 212.6 143 78.3
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 3.8e-47 194.5 584 32.0
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 8.4e-47 193.4 537 37.1
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 3.6e-42 177.9 144 64.6
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 5.4e-38 164.1 144 59.0
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 1.8e-36 159.1 146 59.6
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 2.3e-36 158.7 515 31.8
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 3.0e-36 158.3 144 59.7
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.3e-34 152.9 147 58.5
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 1.1e-33 149.8 149 56.4
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 1.5e-32 146.0 148 56.1
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 3.5e-29 134.8 147 53.7
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 1.8e-28 132.5 140 56.4
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 3.7e-10 71.6 87 50.6
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 3.1e-09 68.6 66 48.5
Actinidia02676 Actinidia chinensis HOM05D000736 ORTHO05D008027 1.2e-08 66.6 130 40.0
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-08 64.3 83 42.2
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 5.5e-06 57.8 55 34.5
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 7.2e-06 57.4 142 28.9
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 7.2e-06 57.4 72 33.3
CDE02G3426 Ceratophyllum demersum HOM05D002594 ORTHO05D003499 9.4e-06 57.0 109 28.4


User provided reference genes

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