Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 6.6e-87 323.9 155 100.0
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 8.3e-74 280.4 157 87.9
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 4.1e-73 278.1 157 87.3
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 7.3e-70 267.3 155 83.9
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 4.1e-57 224.9 131 83.2
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 3.3e-54 215.3 125 86.4
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 1.2e-53 213.4 162 64.8
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 1.4e-52 209.9 159 62.9
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 1.8e-52 209.5 162 63.0
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 2.4e-52 209.1 160 66.9
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 3.1e-52 208.8 162 65.4
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 8.9e-52 207.2 163 61.3
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 1.5e-51 206.5 163 62.6
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 1.5e-51 206.5 158 63.3
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 2.6e-51 205.7 162 63.0
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 2.6e-51 205.7 166 60.8
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 3.4e-51 205.3 163 62.6
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 3.4e-51 205.3 164 62.2
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 1.3e-50 203.4 164 62.2
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 2.9e-50 202.2 163 63.2
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 2.9e-50 202.2 166 62.7
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 2.9e-50 202.2 163 61.3
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 3.8e-50 201.8 158 62.7
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 4.9e-50 201.4 166 61.4
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 6.4e-50 201.1 158 62.7
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 6.4e-50 201.1 158 62.7
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 6.4e-50 201.1 163 59.5
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 1.1e-49 200.3 162 61.7
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 4.2e-49 198.4 162 60.5
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 1.2e-48 196.8 167 61.1
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 1.2e-48 196.8 164 59.1
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 1.6e-48 196.4 155 63.2
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 1.6e-48 196.4 164 60.4
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 2.1e-48 196.1 163 62.6
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 3.5e-48 195.3 167 57.5
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 3.5e-48 195.3 161 58.4
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 6.0e-48 194.5 164 61.6
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 6.0e-48 194.5 157 60.5
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 6.0e-48 194.5 166 60.2
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 7.8e-48 194.1 169 60.4
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.0e-47 193.7 162 58.6
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.7e-47 193.0 159 61.0
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 3.0e-47 192.2 164 62.2
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 3.9e-47 191.8 164 59.8
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 3.9e-47 191.8 164 60.4
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 1.1e-46 190.3 161 59.0
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 1.5e-46 189.9 164 60.4
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.9e-46 189.5 155 62.6
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 4.3e-46 188.3 167 58.1
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 7.3e-46 187.6 162 59.9
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 2.1e-45 186.0 193 52.8
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 1.8e-44 183.0 159 59.7
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 2.4e-44 182.6 155 59.4
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 4.4e-43 178.3 159 58.5
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 2.2e-42 176.0 150 57.3
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 3.8e-42 175.3 159 56.6
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 8.4e-42 174.1 143 60.8
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 1.6e-40 169.9 136 61.8
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 2.1e-40 169.5 163 56.4
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 2.7e-40 169.1 133 61.7
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 1.7e-39 166.4 176 48.9
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 2.3e-39 166.0 162 53.1
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 1.5e-38 163.3 133 61.7
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 1.9e-38 162.9 139 61.2
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 1.6e-37 159.8 131 61.8
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 2.8e-37 159.1 138 60.1
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 1.8e-36 156.4 189 48.1
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 1.7e-34 149.8 133 57.9
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 1.9e-33 146.4 130 57.7
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 1.3e-31 140.2 128 57.8
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 4.3e-30 135.2 162 46.3
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 2.4e-28 129.4 94 61.7
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 3.8e-26 122.1 113 54.0
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 3.2e-25 119.0 139 51.1
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 6.0e-24 114.8 161 38.5
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 6.0e-24 114.8 80 63.8
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 1.9e-22 109.8 188 35.1
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 1.9e-22 109.8 80 60.0
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 2.1e-16 89.7 83 61.4
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 6.7e-15 84.7 83 57.8
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 3.0e-07 59.3 132 31.8
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 4.3e-06 55.5 113 31.9


User provided reference genes

Program Settings