Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 2640.1 1393 100.0
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 2539.6 1580 84.9
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2241.5 1423 81.5
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 2225.3 1423 81.1
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2163.3 1412 79.5
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2154.4 1412 79.1
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2048.5 1413 74.9
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 1496.9 1429 56.0
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 1435.6 1420 54.9
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1411.0 1422 53.5
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1410.2 1426 55.0
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 1409.4 1409 53.7
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1404.0 1426 54.8
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 1391.3 1424 53.5
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 1390.9 1449 52.7
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 1373.6 1424 52.7
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 1368.2 1421 52.7
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 1355.1 1427 51.6
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 1354.3 1421 52.2
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1353.6 1425 51.5
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 1351.7 1422 51.3
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1349.7 1426 51.3
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1345.9 1428 52.0
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1343.6 1425 51.4
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 1340.1 1418 52.2
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 1336.6 1419 51.6
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1334.3 1424 50.8
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 1330.1 1425 50.5
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 1328.9 1418 50.7
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 1323.1 1407 51.4
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 1321.2 1419 50.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 1310.8 1432 50.1
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 1308.9 1420 51.1
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 1301.6 1429 50.2
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 1295.0 1422 50.3
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 1293.9 1426 50.6
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1289.2 1420 50.1
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1288.5 1431 48.9
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1286.6 1420 50.1
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1278.1 1422 50.0
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1271.5 1431 49.1
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 1269.6 1432 49.0
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 1268.8 1432 49.0
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 1268.8 1434 49.2
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1266.5 1431 49.1
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1266.1 1431 48.8
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1263.4 1423 48.6
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 1262.7 1428 47.9
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1262.7 1422 48.8
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1260.0 1431 48.7
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1260.0 1423 48.3
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1257.3 1423 48.5
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 1252.7 1424 48.0
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 1250.3 1423 48.2
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 1243.4 1423 47.3
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1236.1 1423 47.4
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1233.4 1419 47.6
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1231.1 1419 47.6
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1223.8 1412 47.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 1222.2 1423 47.6
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 1209.5 1292 51.1
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1206.0 1416 47.6
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 1203.7 1441 46.2
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 1201.0 1405 47.9
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 1189.9 1426 45.7
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 1188.3 1429 46.7
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 1186.0 1418 45.9
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 1171.4 1420 46.3
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1168.3 1431 47.2
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 1163.7 1427 45.6
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1162.9 1429 46.3
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1162.5 1432 45.7
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1156.4 1429 46.6
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 1155.6 1430 45.6
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 1155.2 1437 45.4
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 1151.3 1420 45.6
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 1147.5 1438 45.2
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 1146.7 1410 46.2
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1146.3 1439 45.7
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 1146.3 1439 45.7
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 1137.9 1421 45.7
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1133.2 1436 45.3
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1132.9 1427 45.1
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1131.7 1436 45.3
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 1131.3 1424 44.5
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 1129.8 1434 45.4
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 1127.5 1417 44.9
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 1125.5 1417 44.6
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 1095.5 1401 45.4
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1088.9 1242 47.7
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 1088.9 1434 42.9
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1083.9 1425 43.9
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1078.2 1422 43.7
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 1.2e-307 1060.4 1433 43.1
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 1.0e-303 1047.3 1363 43.1
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 1.0e-303 1047.3 1420 42.6
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 4.1e-297 1025.4 1035 53.9
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 4.1e-265 919.1 1425 39.5
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 8.4e-250 868.2 1419 36.9
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 1.9e-225 787.3 795 50.8
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 5.7e-182 642.9 1448 31.2
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 2.5e-161 574.3 494 59.9
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 3.6e-152 543.9 808 40.2
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 2.4e-140 504.6 424 62.3
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 5.4e-140 503.4 424 62.3
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 9.2e-140 502.7 424 62.0
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 1.5e-121 442.2 1481 27.4
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 1.1e-119 436.0 443 53.3
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.1e-107 395.2 1504 25.4
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 8.2e-104 383.3 1405 26.3
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-94 351.7 345 59.7
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 8.2e-88 330.1 344 53.5
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.9e-69 268.5 264 61.4
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.7e-67 261.2 307 50.5
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 4.1e-63 248.1 1491 21.5
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.2e-46 193.4 129 72.1
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 2.7e-46 192.2 395 33.2
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 3.5e-46 191.8 170 54.1
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.5e-41 176.4 127 70.9
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 3.4e-41 175.3 126 69.0
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 2.1e-38 166.0 115 68.7
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 6.0e-38 164.5 193 47.7
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 2.5e-36 159.1 115 67.0
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 7.3e-36 157.5 111 69.4
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 3.4e-33 148.7 99 72.7
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 4.4e-33 148.3 98 72.4
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 2.2e-32 146.0 129 52.7
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 8.1e-27 127.5 353 29.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.6e-22 113.2 82 68.3
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.8e-19 102.4 105 46.7
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.1e-18 100.5 65 72.3
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 2.6e-17 95.9 280 31.4
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 7.9e-14 84.3 118 36.4
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 7.4e-12 77.8 96 40.6
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 1.2e-06 60.5 42 69.0
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 3.5e-06 58.9 107 35.5


User provided reference genes

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