Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 4.3e-80 301.2 147 100.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 9.4e-43 177.2 92 96.7
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 8.0e-42 174.1 92 95.7
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 8.0e-42 174.1 92 95.7
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 1.9e-35 152.9 94 84.0
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.0e-33 147.1 78 96.2
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.0e-32 142.9 85 82.4
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.3e-32 142.1 100 73.0
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 9.7e-32 140.6 91 76.9
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 9.7e-32 140.6 87 80.5
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.3e-31 140.2 91 79.1
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.7e-31 139.8 91 79.1
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.7e-31 139.8 86 81.4
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.2e-31 139.4 86 80.2
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.8e-31 139.0 80 86.2
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.8e-31 139.0 82 84.1
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.7e-31 138.7 86 81.4
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 3.7e-31 138.7 86 80.2
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 4.8e-31 138.3 84 83.3
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 4.8e-31 138.3 91 78.0
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 6.3e-31 137.9 86 81.4
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 8.2e-31 137.5 83 83.1
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 8.2e-31 137.5 86 81.4
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 8.2e-31 137.5 86 80.2
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.1e-30 137.1 95 74.7
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.1e-30 137.1 82 84.1
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.4e-30 136.7 89 76.4
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.4e-30 136.0 86 79.1
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.4e-30 136.0 90 74.4
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.1e-30 135.6 83 80.7
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 4.1e-30 135.2 82 81.7
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 4.1e-30 135.2 86 80.2
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 4.1e-30 135.2 86 80.2
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.3e-30 134.8 86 80.2
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 5.3e-30 134.8 86 80.2
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 5.3e-30 134.8 86 77.9
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 7.0e-30 134.4 82 82.9
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 7.0e-30 134.4 86 80.2
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.2e-29 133.7 82 79.3
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.6e-29 133.3 86 79.1
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 2.0e-29 132.9 82 80.5
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.0e-29 132.9 100 71.0
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.0e-29 132.9 83 79.5
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 2.0e-29 132.9 83 79.5
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 2.0e-29 132.9 83 79.5
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.7e-29 132.5 88 75.0
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.7e-29 132.5 87 75.9
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 3.5e-29 132.1 80 82.5
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 3.5e-29 132.1 80 82.5
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 3.5e-29 132.1 82 79.3
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 4.5e-29 131.7 86 79.1
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 4.5e-29 131.7 86 79.1
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 4.5e-29 131.7 86 79.1
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 4.5e-29 131.7 93 73.1
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 5.9e-29 131.3 95 72.6
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 5.9e-29 131.3 84 77.4
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 7.7e-29 131.0 83 78.3
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.0e-28 130.6 83 80.7
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.0e-28 130.6 86 79.1
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.3e-28 130.2 83 77.1
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.3e-28 130.2 90 74.4
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.3e-28 130.2 100 65.0
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.7e-28 129.8 82 76.8
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.2e-28 129.4 92 69.6
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.2e-28 129.4 83 75.9
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.2e-28 129.4 83 77.1
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.2e-28 129.4 86 76.7
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.8e-28 128.6 83 77.1
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 5.0e-28 128.3 87 74.7
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 5.0e-28 128.3 87 74.7
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 6.5e-28 127.9 80 78.8
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 6.5e-28 127.9 81 77.8
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 6.5e-28 127.9 88 71.6
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 8.5e-28 127.5 83 77.1
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 8.5e-28 127.5 83 75.9
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 8.5e-28 127.5 83 75.9
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.1e-27 127.1 84 75.0
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.1e-27 127.1 86 76.7
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.5e-27 126.7 89 70.8
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.9e-27 126.3 79 83.5
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.9e-27 126.3 82 76.8
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 2.5e-27 125.9 83 75.9
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 2.5e-27 125.9 83 75.9
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 2.5e-27 125.9 86 74.4
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 2.5e-27 125.9 84 75.0
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.5e-27 125.9 80 76.2
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.5e-27 125.9 82 78.0
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.2e-27 125.6 79 83.5
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.2e-27 125.6 79 83.5
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.2e-27 125.6 79 83.5
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 3.2e-27 125.6 84 78.6
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 5.5e-27 124.8 81 74.1
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 5.5e-27 124.8 81 74.1
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 5.5e-27 124.8 81 74.1
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 5.5e-27 124.8 81 74.1
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 5.5e-27 124.8 75 84.0
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 5.5e-27 124.8 89 73.0
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 7.2e-27 124.4 86 74.4
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 7.2e-27 124.4 83 74.7
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 9.4e-27 124.0 82 75.6
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 9.4e-27 124.0 81 74.1
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 9.4e-27 124.0 82 75.6
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 9.4e-27 124.0 82 75.6
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 9.4e-27 124.0 81 74.1
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 9.4e-27 124.0 81 74.1
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 9.4e-27 124.0 83 80.7
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 9.4e-27 124.0 83 74.7
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.2e-26 123.6 79 83.5
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.6e-26 123.2 81 76.5
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 1.6e-26 123.2 75 84.0
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 2.7e-26 122.5 75 80.0
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 3.6e-26 122.1 69 92.8
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 6.1e-26 121.3 79 78.5
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.0e-25 120.6 90 71.1
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.8e-25 119.8 79 77.2
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 4.0e-25 118.6 79 79.7
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 4.0e-25 118.6 81 71.6
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 4.0e-25 118.6 81 71.6
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 4.0e-25 118.6 81 71.6
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.0e-25 118.6 78 78.2
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 6.8e-25 117.9 93 72.0
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 8.8e-25 117.5 85 74.1
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.2e-24 117.1 75 78.7
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 3.4e-24 115.5 94 69.1
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 3.4e-24 115.5 78 78.2
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.7e-24 114.8 81 75.3
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.8e-22 109.8 75 76.0
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.8e-22 109.8 80 65.0
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 4.5e-21 105.1 74 77.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 7.7e-21 104.4 79 68.4
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.3e-20 103.6 73 75.3
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 6.6e-20 101.3 88 67.0
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 2.5e-19 99.4 80 60.0
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 2.5e-19 99.4 78 65.4
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.6e-18 96.7 65 72.3
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 2.8e-18 95.9 76 67.1
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.0e-17 92.4 75 66.7
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 9.8e-16 87.4 81 60.5
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.1e-14 84.0 56 75.0
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.1e-14 84.0 56 75.0
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.1e-14 82.4 51 76.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.1e-14 82.0 59 67.8
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 3.5e-13 79.0 86 46.5
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.1e-11 73.9 51 68.6
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 4.0e-09 65.5 40 80.0


User provided reference genes

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