Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G48.14 Capsicum annuum HOM05D001977 ORTHO05D011389 5.4e-127 457.6 221 100.0
CAN.G78.143 Capsicum annuum HOM05D001977 ORTHO05D002246 2.7e-49 199.5 153 69.9
PGSC0003DMG400000078 Solanum tuberosum HOM05D001977 ORTHO05D002246 6.8e-45 184.9 153 65.4
Sopen01g039090 Solanum pennellii HOM05D001977 ORTHO05D002246 7.5e-44 181.4 153 64.1
Nitab4.5_0004748g0030 Nicotiana tabacum HOM05D001977 ORTHO05D002246 9.8e-44 181.0 153 63.4
Peaxi162Scf01254g00029 Petunia axillaris HOM05D001977 ORTHO05D002246 9.8e-44 181.0 153 63.4
Solyc01g095300.3 Solanum lycopersicum HOM05D001977 ORTHO05D002246 3.7e-43 179.1 153 62.7
Nitab4.5_0000305g0380 Nicotiana tabacum HOM05D001977 ORTHO05D002246 1.4e-42 177.2 153 62.1
Cc02_g38760 Coffea canephora HOM05D001977 ORTHO05D002246 5.8e-28 128.6 153 47.1
SalBow5G5061 Salvia bowleyana HOM05D001977 ORTHO05D002246 1.6e-25 120.6 151 45.0
Thecc.01G350000 Theobroma cacao HOM05D001977 ORTHO05D002246 7.8e-25 118.2 150 42.0
Dinv32535 Davidia involucrata HOM05D001977 ORTHO05D002246 1.7e-24 117.1 153 43.8
Rhsim01G0168400 Rhododendron simsii HOM05D001977 ORTHO05D002246 1.7e-24 117.1 153 43.1
Migut.N01578 Erythranthe guttata HOM05D001977 ORTHO05D002246 3.0e-24 116.3 151 42.4
Dinv43879 Davidia involucrata HOM05D001977 ORTHO05D002246 3.9e-24 115.9 153 45.8
Duzib133G0786 Durio zibethinus HOM05D001977 ORTHO05D002246 5.0e-24 115.5 150 40.7
DCAR_006957 Daucus carota HOM05D001977 ORTHO05D002246 6.6e-24 115.2 153 41.2
vmacro20876 Vaccinium macrocarpon HOM05D001977 ORTHO05D002246 6.6e-24 115.2 153 42.5
GSVIVG01027020001 Vitis vinifera HOM05D001977 ORTHO05D002246 1.5e-23 114.0 153 43.1
Sabra02G0145500 Salix brachista HOM05D001977 ORTHO05D002246 2.5e-23 113.2 153 41.8
CSS0023193 Camellia sinensis var. sinensis HOM05D001977 ORTHO05D002246 3.3e-23 112.8 154 41.6
Gohir.A08G127200 Gossypium hirsutum HOM05D001977 ORTHO05D002246 3.3e-23 112.8 150 41.3
Gohir.D08G148600 Gossypium hirsutum HOM05D001977 ORTHO05D002246 4.3e-23 112.5 150 41.3
Gorai.004G154300 Gossypium raimondii HOM05D001977 ORTHO05D002246 4.3e-23 112.5 150 41.3
Duzib138G0834 Durio zibethinus HOM05D001977 ORTHO05D002246 7.3e-23 111.7 150 40.0
Hma1.2p1_0783F.1_g217010 Hydrangea macrophylla HOM05D001977 ORTHO05D002246 7.3e-23 111.7 153 43.1
Potri.002G166100 Populus trichocarpa HOM05D001977 ORTHO05D002246 7.3e-23 111.7 153 40.5
Atru.chr5.605 Acer truncatum HOM05D001977 ORTHO05D002246 1.6e-22 110.5 151 39.7
MSTRG.4828 Avicennia marina HOM05D001977 ORTHO05D002246 2.1e-22 110.2 149 40.9
CiPaw.02G037200 Carya illinoinensis HOM05D001977 ORTHO05D002246 3.6e-22 109.4 151 43.0
Potri.014G092500 Populus trichocarpa HOM05D001977 ORTHO05D002246 3.6e-22 109.4 153 39.9
MSTRG.20874 Avicennia marina HOM05D001977 ORTHO05D002246 4.7e-22 109.0 154 40.9
Actinidia10087 Actinidia chinensis HOM05D001977 ORTHO05D002246 6.2e-22 108.6 153 39.9
CSS0043665 Camellia sinensis var. sinensis HOM05D001977 ORTHO05D002246 6.2e-22 108.6 153 41.8
CANSAT56G4081 Cannabis sativa HOM05D001977 ORTHO05D002246 6.2e-22 108.6 153 41.2
Gorai.007G104300 Gossypium raimondii HOM05D001977 ORTHO05D002246 6.2e-22 108.6 150 38.7
Manes.01G251000 Manihot esculenta HOM05D001977 ORTHO05D002246 6.2e-22 108.6 153 39.9
Gohir.A11G093200 Gossypium hirsutum HOM05D001977 ORTHO05D002246 1.1e-21 107.8 150 38.7
CSS0026488 Camellia sinensis var. sinensis HOM05D001977 ORTHO05D002246 1.4e-21 107.5 151 41.7
Lj3g0010045 Lotus japonicus HOM05D001977 ORTHO05D002246 2.3e-21 106.7 153 37.9
Gohir.D11G098100 Gossypium hirsutum HOM05D001977 ORTHO05D002246 3.1e-21 106.3 150 38.0
TAR374G0937 Trochodendron aralioides HOM05D001977 ORTHO05D002246 3.1e-21 106.3 153 42.5
COL.COLO4_06362 Corchorus olitorius HOM05D001977 ORTHO05D002246 4.0e-21 105.9 150 38.0
arahy.Tifrunner.gnm1.ann1.X5BQMH Arachis hypogaea HOM05D001977 ORTHO05D002246 2.0e-20 103.6 153 36.6
Oeu022857.1 Olea europaea HOM05D001977 ORTHO05D002246 2.0e-20 103.6 155 41.3
arahy.Tifrunner.gnm1.ann1.VW0VG8 Arachis hypogaea HOM05D001977 ORTHO05D002246 2.6e-20 103.2 153 36.6
Haze_15594 Corylus avellana HOM05D001977 ORTHO05D002246 2.6e-20 103.2 151 41.1
TAR375G0481 Trochodendron aralioides HOM05D001977 ORTHO05D002246 2.6e-20 103.2 153 40.5
Lj7C505G15 Lonicera japonica HOM05D001977 ORTHO05D002246 3.4e-20 102.8 155 40.0
VMungo0331G0360 Vigna mungo HOM05D001977 ORTHO05D002246 3.4e-20 102.8 153 36.6
Glyma.16G030100 Glycine max HOM05D001977 ORTHO05D002246 5.8e-20 102.1 153 37.3
Lalb_Chr17g0338911 Lupinus albus HOM05D001977 ORTHO05D002246 5.8e-20 102.1 153 37.3
SGA_v2.0_scaffold43G16387 Striga asiatica HOM05D001977 ORTHO05D002246 1.3e-19 100.9 151 41.7
TWI23G0084 Tripterygium wilfordii HOM05D001977 ORTHO05D002246 1.3e-19 100.9 153 37.3
Ca_23547_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.2e-19 100.1 153 35.3
Ca_30879_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.2e-19 100.1 153 35.3
Phvul.010G105900 Phaseolus vulgaris HOM05D001977 ORTHO05D002246 2.9e-19 99.8 153 36.6
Sabra14G0067100 Salix brachista HOM05D001977 ORTHO05D002246 3.7e-19 99.4 153 37.3
EL10Ac1g00336 Beta vulgaris HOM05D001977 ORTHO05D002246 4.9e-19 99.0 149 37.6
Lalb_Chr10g0096531 Lupinus albus HOM05D001977 ORTHO05D002246 4.9e-19 99.0 153 37.9
Cfa003855 Carpinus fangiana HOM05D001977 ORTHO05D002246 6.4e-19 98.6 151 40.4
ECA234G3284 Erigeron canadensis HOM05D001977 ORTHO05D002246 6.4e-19 98.6 153 39.9
vmacro13214 Vaccinium macrocarpon HOM05D001977 ORTHO05D002246 6.4e-19 98.6 151 41.1
QL04p058948 Quercus lobata HOM05D001977 ORTHO05D002246 8.3e-19 98.2 153 41.8
RcHm_v2.0_Chr1g0358361 Rosa chinensis HOM05D001977 ORTHO05D002246 8.3e-19 98.2 153 36.6
SalBow3G1047 Salvia bowleyana HOM05D001977 ORTHO05D002246 8.3e-19 98.2 155 38.7
Nn1g01751 Nelumbo nucifera HOM05D001977 ORTHO05D002246 1.1e-18 97.8 153 39.9
SGA_v2.0_scaffold11G05700 Striga asiatica HOM05D001977 ORTHO05D002246 1.4e-18 97.4 149 40.3
Manes.05G027800 Manihot esculenta HOM05D001977 ORTHO05D002246 1.9e-18 97.1 153 36.6
Ciclev10018649m.g Citrus clementina HOM05D001977 ORTHO05D002246 2.4e-18 96.7 154 35.7
Psat4g157160 Pisum sativum HOM05D001977 ORTHO05D002246 2.4e-18 96.7 153 34.6
Migut.B01815 Erythranthe guttata HOM05D001977 ORTHO05D002246 3.2e-18 96.3 143 41.3
Sed0012656 Sechium edule HOM05D001977 ORTHO05D002246 3.2e-18 96.3 153 35.9
Hund16682 Selenicereus undatus HOM05D001977 ORTHO05D002246 3.2e-18 96.3 146 41.8
FAN03G1732 Fragaria x ananassa HOM05D001977 ORTHO05D002246 7.1e-18 95.1 153 35.3
TPR.G18147 Trifolium pratense HOM05D001977 ORTHO05D002246 7.1e-18 95.1 153 33.3
FAN06G3444 Fragaria x ananassa HOM05D001977 ORTHO05D002246 9.2e-18 94.7 153 35.3
FAN06G3533 Fragaria x ananassa HOM05D001977 ORTHO05D002246 9.2e-18 94.7 153 35.3
Lj9C594T10 Lonicera japonica HOM05D001977 ORTHO05D002246 9.2e-18 94.7 153 37.9
MELO3C021173.2 Cucumis melo HOM05D001977 ORTHO05D002246 1.2e-17 94.4 153 36.6
Glyma.07G062100 Glycine max HOM05D001977 ORTHO05D002246 1.2e-17 94.4 153 34.6
CsaV3_6G000960 Cucumis sativus L. HOM05D001977 ORTHO05D002246 1.6e-17 94.0 153 35.9
FvH4_7g15660 Fragaria vesca HOM05D001977 ORTHO05D002246 1.6e-17 94.0 153 35.3
HanXRQChr06g0166941 Helianthus annuus HOM05D001977 ORTHO05D002246 1.6e-17 94.0 153 34.6
Medtr8g028395 Medicago truncatula HOM05D001977 ORTHO05D002246 2.7e-17 93.2 153 33.3
CiPaw.01G069600 Carya illinoinensis HOM05D001977 ORTHO05D002246 3.5e-17 92.8 152 36.8
FAN01G0097 Fragaria x ananassa HOM05D001977 ORTHO05D002246 3.5e-17 92.8 152 34.9
FAN10G0843 Fragaria x ananassa HOM05D001977 ORTHO05D002246 3.5e-17 92.8 153 34.6
FAN10G4099 Fragaria x ananassa HOM05D001977 ORTHO05D002246 3.5e-17 92.8 153 34.6
Prupe.2G179800 Prunus persica HOM05D001977 ORTHO05D002246 4.6e-17 92.4 153 35.3
Sc01g0003110 Simmondsia chinensis HOM05D001977 ORTHO05D002246 4.6e-17 92.4 153 37.3
Lsat_1_v5_gn_4_34080 Lactuca sativa HOM05D001977 ORTHO05D002246 6.0e-17 92.0 150 35.3
MD01G1073400 Malus domestica HOM05D001977 ORTHO05D002246 6.0e-17 92.0 153 35.9
Oeu004919.1 Olea europaea HOM05D001977 ORTHO05D002246 6.0e-17 92.0 154 36.4
HanXRQChr16g0523821 Helianthus annuus HOM05D001977 ORTHO05D002246 7.8e-17 91.7 153 36.6
PGR042G1970 Punica granatum HOM05D001977 ORTHO05D002246 7.8e-17 91.7 151 38.4
HanXRQChr17g0562251 Helianthus annuus HOM05D001977 ORTHO05D002246 1.3e-16 90.9 153 34.6
Hund27234 Selenicereus undatus HOM05D001977 ORTHO05D002246 1.3e-16 90.9 151 37.1
TWI14G0955 Tripterygium wilfordii HOM05D001977 ORTHO05D002246 1.3e-16 90.9 153 34.0
Cpa.g.sc184.12 Carica papaya HOM05D001977 ORTHO05D002246 2.3e-16 90.1 153 37.9
Rhsim07G0008900 Rhododendron simsii HOM05D001977 ORTHO05D002246 3.0e-16 89.7 151 37.1
Aqoxy5G04047 Aquilegia oxysepala HOM05D001977 ORTHO05D002246 8.6e-16 88.2 153 36.6
Eucgr.E00083 Eucalyptus grandis HOM05D001977 ORTHO05D002246 1.1e-15 87.8 150 34.7
PSO170G3647 Papaver somniferum HOM05D001977 ORTHO05D002246 1.1e-15 87.8 151 36.4
ECA240G2267 Erigeron canadensis HOM05D001977 ORTHO05D002246 1.5e-15 87.4 153 32.7
Sc23g0002440 Simmondsia chinensis HOM05D001977 ORTHO05D002246 1.5e-15 87.4 158 38.0
MBI07_g06317_MAGBIO Magnolia biondii HOM05D001977 ORTHO05D002246 2.5e-15 86.7 154 37.7
Thhalv10028385m.g Eutrema salsugineum HOM05D001977 ORTHO05D002246 3.3e-15 86.3 153 32.7
CARHR249090 Cardamine hirsuta HOM05D001977 ORTHO05D002246 4.3e-15 85.9 153 32.7
Rhsim11G0144700 Rhododendron simsii HOM05D001977 ORTHO05D002246 4.3e-15 85.9 125 39.2
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 5.6e-15 85.5 153 34.6
PSO063G6918 Papaver somniferum HOM05D001977 ORTHO05D002246 5.6e-15 85.5 151 35.8
Zm00001eb358450 Zea mays HOM05D001977 ORTHO05D002246 5.6e-15 85.5 154 31.8
Zm00001eb358480 Zea mays HOM05D001977 ORTHO05D002246 5.6e-15 85.5 154 31.8
ATR0109G019 Amborella trichopoda HOM05D001977 ORTHO05D002246 2.1e-14 83.6 151 37.1
THA.LOC104801379 Tarenaya hassleriana HOM05D001977 ORTHO05D002246 2.8e-14 83.2 153 30.7
Lj3C337T0 Lonicera japonica HOM05D001977 ORTHO05D002246 3.6e-14 82.8 123 38.2
Carub.0006s3625 Capsella rubella HOM05D001977 ORTHO05D002246 1.1e-13 81.3 153 33.3
AT4G01210 Arabidopsis thaliana HOM05D001977 ORTHO05D002246 1.4e-13 80.9 153 32.0
Sp6g00910 Schrenkiella parvula HOM05D001977 ORTHO05D002246 1.4e-13 80.9 153 32.0
AL6G52170 Arabidopsis lyrata HOM05D001977 ORTHO05D002246 2.3e-13 80.1 153 31.4
Lsat_1_v5_gn_3_138461 Lactuca sativa HOM05D001977 ORTHO05D002246 3.1e-13 79.7 150 34.0
C09p00760 Brassica napus HOM05D001977 ORTHO05D002246 6.8e-13 78.6 153 30.1
Lsat_1_v5_gn_6_25500 Lactuca sativa HOM05D001977 ORTHO05D002246 6.8e-13 78.6 150 33.3
BolC9t53010H Brassica oleracea HOM05D001977 ORTHO05D002246 8.9e-13 78.2 153 30.1
Aa31LG5G800 Aethionema arabicum HOM05D001977 ORTHO05D002246 2.0e-12 77.0 153 29.4
BcaC01g06850 Brassica carinata HOM05D001977 ORTHO05D002246 2.6e-12 76.6 153 29.4
C03p38950 Brassica napus HOM05D001977 ORTHO05D002246 2.6e-12 76.6 153 29.4
BolC3t16167H Brassica oleracea HOM05D001977 ORTHO05D002246 2.6e-12 76.6 153 29.4
BcaB01g02326 Brassica carinata HOM05D001977 ORTHO05D002246 5.8e-12 75.5 153 29.4
A03p31930 Brassica napus HOM05D001977 ORTHO05D002246 5.8e-12 75.5 154 29.9
PGSC0003DMG400036508 Solanum tuberosum HOM05D009128 ORTHO05D011389 5.8e-12 75.5 52 69.2
A09p00140 Brassica napus HOM05D001977 ORTHO05D002246 7.6e-12 75.1 153 29.4
BraA03t12365Z Brassica rapa HOM05D001977 ORTHO05D002246 7.6e-12 75.1 154 29.9
BraA09t35742Z Brassica rapa HOM05D001977 ORTHO05D002246 7.6e-12 75.1 153 29.4
Solyc04g024880.3 Solanum lycopersicum HOM05D009128 ORTHO05D011389 7.6e-12 75.1 94 45.7
Zm00001eb159550 Zea mays HOM05D001977 ORTHO05D002246 7.6e-12 75.1 154 28.6
THA.LOC104825864 Tarenaya hassleriana HOM05D001977 ORTHO05D002246 1.7e-11 73.9 153 30.1
PGSC0003DMG400046551 Solanum tuberosum HOM05D009128 ORTHO05D011389 2.9e-11 73.2 50 72.0
BcaC04g24132 Brassica carinata HOM05D001977 ORTHO05D002246 6.4e-11 72.0 131 30.5
Ah.05g180050 Amaranthus hybridus HOM05D001977 ORTHO05D002246 1.9e-10 70.5 135 33.3
CAN.G507.10 Capsicum annuum HOM05D009128 ORTHO05D011389 1.9e-10 70.5 51 72.5
Peaxi162Scf00116g00003 Petunia axillaris HOM05D009128 ORTHO05D011389 1.9e-10 70.5 50 68.0
Peaxi162Scf00238g00610 Petunia axillaris HOM05D009128 ORTHO05D011389 1.9e-10 70.5 50 68.0
AUR62022635 Chenopodium quinoa HOM05D001977 ORTHO05D002246 2.4e-10 70.1 130 40.0
Peaxi162Scf00304g00124 Petunia axillaris HOM05D009128 ORTHO05D011389 2.4e-10 70.1 65 55.4
Peaxi162Scf00206g01515 Petunia axillaris HOM05D009128 ORTHO05D011389 3.2e-10 69.7 51 66.7
Peaxi162Scf00299g00004 Petunia axillaris HOM05D009128 ORTHO05D011389 4.1e-10 69.3 50 68.0
AUR62004428 Chenopodium quinoa HOM05D001977 ORTHO05D002246 5.4e-10 68.9 132 38.6
Peaxi162Scf00085g00185 Petunia axillaris HOM05D009128 ORTHO05D011389 2.7e-09 66.6 51 64.7
Sed0009109 Sechium edule HOM05D001977 ORTHO05D002246 6.0e-09 65.5 69 36.2
Peaxi162Scf01294g00128 Petunia axillaris HOM05D009128 ORTHO05D011389 3.9e-08 62.8 47 66.0
TPR.G27910 Trifolium pratense HOM05D009128 ORTHO05D011389 6.6e-08 62.0 47 61.7
Duzib128G0497 Durio zibethinus HOM05D001977 ORTHO05D002246 8.6e-08 61.6 114 35.1
Gohir.D05G291800 Gossypium hirsutum HOM05D001977 ORTHO05D002246 1.9e-07 60.5 115 35.7
Gorai.009G307600 Gossypium raimondii HOM05D001977 ORTHO05D002246 1.9e-07 60.5 115 35.7
Lsat_1_v5_gn_5_8501 Lactuca sativa HOM05D001977 ORTHO05D002246 2.5e-07 60.1 54 55.6
Gohir.A05G290600 Gossypium hirsutum HOM05D001977 ORTHO05D002246 4.3e-07 59.3 115 35.7
COL.COLO4_07703 Corchorus olitorius HOM05D001977 ORTHO05D002246 5.6e-07 58.9 126 34.1
SEGI_35759 Sequoiadendron giganteum HOM05D001977 ORTHO05D002246 5.6e-07 58.9 51 60.8
ClCG08G007970 Citrullus lanatus HOM05D001977 ORTHO05D002246 7.3e-07 58.5 135 30.4
CANSAT56G0646 Cannabis sativa HOM05D001977 ORTHO05D002246 1.2e-06 57.8 134 30.6
ClCG06G003320 Citrullus lanatus HOM05D001977 ORTHO05D002246 1.2e-06 57.8 154 32.5
CsaV3_2G032790 Cucumis sativus L. HOM05D001977 ORTHO05D002246 2.1e-06 57.0 71 43.7
unitig_62.g23805 Utricularia gibba HOM05D001977 ORTHO05D002246 2.1e-06 57.0 91 36.3
Thecc.10G091100 Theobroma cacao HOM05D001977 ORTHO05D002246 3.6e-06 56.2 99 34.3
MELO3C019854.2 Cucumis melo HOM05D001977 ORTHO05D002246 4.7e-06 55.8 82 37.8
Ca_03767_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 6.2e-06 55.5 53 54.7
Nn2g13906 Nelumbo nucifera HOM05D001977 ORTHO05D002246 8.1e-06 55.1 65 43.1


User provided reference genes

Program Settings