Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 1.7e-55 220.3 260 100.0
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 2.6e-51 206.5 260 96.9
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 7.4e-51 204.9 260 96.2
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 8.0e-45 184.9 263 90.9
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 3.7e-42 176.0 262 89.7
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 8.2e-42 174.9 260 67.3
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 1.4e-41 174.1 262 85.9
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 7.0e-41 171.8 262 88.2
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 9.1e-41 171.4 262 88.5
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 9.1e-41 171.4 262 88.5
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 9.1e-41 171.4 267 89.1
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 1.2e-40 171.0 262 88.2
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 2.0e-40 170.2 262 88.2
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 2.0e-40 170.2 262 88.2
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 4.5e-40 169.1 262 87.0
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 4.5e-40 169.1 262 79.0
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 5.9e-40 168.7 260 87.7
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 7.7e-40 168.3 260 87.7
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 1.0e-39 167.9 263 87.5
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 1.0e-39 167.9 262 87.4
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.7e-39 167.2 262 87.8
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.7e-39 167.2 262 87.4
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.7e-39 167.2 262 87.4
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 1.7e-39 167.2 262 87.8
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 2.9e-39 166.4 262 87.4
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 3.8e-39 166.0 262 85.9
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 5.0e-39 165.6 262 81.7
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 5.0e-39 165.6 261 87.4
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 5.0e-39 165.6 262 79.8
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 6.5e-39 165.2 262 87.4
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 6.5e-39 165.2 260 87.3
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 8.5e-39 164.9 262 87.0
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 1.1e-38 164.5 262 87.0
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 1.1e-38 164.5 262 87.0
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 1.1e-38 164.5 262 79.4
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 1.1e-38 164.5 261 87.0
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 1.5e-38 164.1 262 80.5
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 1.9e-38 163.7 260 85.4
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 1.9e-38 163.7 260 79.6
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 1.9e-38 163.7 262 80.5
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 2.5e-38 163.3 262 81.3
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 2.5e-38 163.3 262 84.7
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 5.5e-38 162.2 262 86.6
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 7.2e-38 161.8 262 85.9
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 7.2e-38 161.8 260 86.5
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 7.2e-38 161.8 263 86.7
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 9.4e-38 161.4 260 87.3
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 1.2e-37 161.0 262 85.9
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 1.2e-37 161.0 262 85.9
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 4.7e-37 159.1 262 85.5
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 6.1e-37 158.7 262 85.1
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.0e-36 156.0 262 85.9
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 5.2e-36 155.6 262 85.9
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 6.8e-36 155.2 262 85.9
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.5e-35 154.1 261 83.5
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 2.0e-35 153.7 262 84.4
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 2.6e-35 153.3 260 84.6
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 3.4e-35 152.9 261 83.5
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 3.4e-35 152.9 262 82.8
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 3.4e-35 152.9 260 84.2
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 5.7e-35 152.1 262 38.9
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 2.2e-34 150.2 262 84.7
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 2.8e-34 149.8 262 84.7
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 4.8e-34 149.1 261 84.7
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 2.4e-33 146.7 261 83.1
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 4.1e-33 146.0 247 86.2
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 7.0e-33 145.2 261 82.8
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 1.6e-32 144.1 261 82.0
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 2.0e-32 143.7 261 81.6
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 2.7e-32 143.3 261 82.0
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 2.7e-32 143.3 261 82.0
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 3.5e-32 142.9 262 80.5
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 3.5e-32 142.9 262 80.5
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 3.5e-32 142.9 262 80.5
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 5.9e-32 142.1 261 82.4
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 5.9e-32 142.1 260 82.7
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 7.7e-32 141.7 261 82.0
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 1.0e-31 141.4 262 80.2
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 2.3e-31 140.2 261 81.6
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 2.3e-31 140.2 261 81.6
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 2.3e-31 140.2 261 82.0
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 2.9e-31 139.8 258 82.2
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 2.9e-31 139.8 261 81.6
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 3.8e-31 139.4 284 65.1
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 6.5e-31 138.7 261 81.6
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 6.5e-31 138.7 261 81.6
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 6.5e-31 138.7 261 81.6
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 6.5e-31 138.7 299 51.8
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 1.1e-30 137.9 260 81.9
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 9.5e-30 134.8 287 78.0
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 9.5e-30 134.8 262 76.0
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.2e-29 134.4 262 80.9
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.1e-29 132.1 251 84.5
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.8e-28 130.6 249 83.5
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 4.0e-28 129.4 234 88.5
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 4.4e-27 125.9 269 59.1
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 7.5e-27 125.2 231 89.2
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 1.7e-26 124.0 261 80.8
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 2.4e-25 120.2 236 86.0
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 5.9e-24 115.5 63 88.9
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 2.9e-23 113.2 64 84.4
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 8.6e-23 111.7 64 82.8
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 1.1e-22 111.3 63 84.1
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 1.1e-22 111.3 73 78.1
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 2.5e-22 110.2 62 82.3
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 4.3e-22 109.4 337 64.4
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 5.6e-22 109.0 75 73.3
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 5.6e-22 109.0 75 73.3
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 2.1e-21 107.1 63 79.4
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 3.6e-21 106.3 75 72.0
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 3.6e-21 106.3 63 79.4
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 3.6e-21 106.3 258 71.3
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 1.4e-20 104.4 268 72.0
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.8e-20 104.0 85 67.1
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 2.3e-20 103.6 71 77.5
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 2.6e-19 100.1 264 75.0
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 1.7e-18 97.4 63 71.4
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 2.9e-18 96.7 96 57.3
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 1.6e-16 90.9 319 55.5
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 2.7e-16 90.1 207 89.9
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 1.0e-15 88.2 74 62.2
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 1.0e-15 88.2 75 57.3
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 1.3e-15 87.8 61 62.3
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 8.6e-15 85.1 66 60.6
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 1.1e-12 78.2 54 68.5
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 4.4e-11 72.8 59 50.8
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 7.5e-11 72.0 255 50.2
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 9.8e-11 71.6 54 68.5
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 2.2e-10 70.5 339 51.3
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 1.4e-09 67.8 60 50.0
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 1.2e-08 64.7 61 45.9
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 3.5e-08 63.2 60 45.0
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 3.5e-08 63.2 59 47.5
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 3.5e-08 63.2 59 47.5
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 6.0e-08 62.4 57 47.4
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 6.0e-08 62.4 59 47.5
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 7.8e-08 62.0 59 47.5
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 7.8e-08 62.0 61 42.6
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 7.8e-08 62.0 59 45.8
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.0e-07 61.6 64 43.8
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 1.0e-07 61.6 59 45.8
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 1.7e-07 60.8 63 39.7
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 2.3e-07 60.5 65 38.5
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 3.0e-07 60.1 69 39.1
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 3.0e-07 60.1 69 39.1
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 3.0e-07 60.1 63 39.7
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 3.9e-07 59.7 55 45.5
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 3.9e-07 59.7 65 38.5
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 3.9e-07 59.7 66 40.9
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 5.0e-07 59.3 59 45.8
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 6.6e-07 58.9 62 45.2
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 8.6e-07 58.5 57 40.4
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 8.6e-07 58.5 57 45.6
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 1.1e-06 58.2 58 39.7
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 1.1e-06 58.2 67 37.3
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 1.5e-06 57.8 63 41.3
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 1.9e-06 57.4 67 37.3
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 1.9e-06 57.4 63 38.1
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 2.5e-06 57.0 63 38.1
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 2.5e-06 57.0 60 38.3
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 2.5e-06 57.0 60 41.7
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 63 41.3
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 4.3e-06 56.2 67 37.3
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 4.3e-06 56.2 62 38.7
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 4.3e-06 56.2 59 37.3
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 4.3e-06 56.2 59 39.0
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 4.3e-06 56.2 59 39.0
Migut.D00855 Erythranthe guttata HOM05D006395 ORTHO05D007894 4.3e-06 56.2 59 40.7
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 59 39.0
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 59 39.0
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 4.3e-06 56.2 59 39.0
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 4.3e-06 56.2 64 37.5
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 5.6e-06 55.8 54 44.4
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 5.6e-06 55.8 57 43.9
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 5.6e-06 55.8 63 38.1
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 5.6e-06 55.8 63 38.1
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 7.3e-06 55.5 68 39.7
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 9.5e-06 55.1 72 40.3
MSTRG.21234 Avicennia marina HOM05D006395 ORTHO05D007894 9.5e-06 55.1 59 35.6
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 9.5e-06 55.1 63 38.1
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 9.5e-06 55.1 64 37.5


User provided reference genes

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