Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.9e-83 312.4 152 100.0
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 3.1e-81 305.1 152 97.4
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 3.1e-81 305.1 152 97.4
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.4e-80 301.6 152 96.1
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.9e-78 295.8 152 94.7
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 93.4
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 152 93.4
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 93.4
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 91.4
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 1.8e-76 289.3 147 94.6
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 1.8e-76 289.3 147 94.6
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 2.3e-76 288.9 144 97.2
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 2.3e-76 288.9 144 97.2
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 144 97.2
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 92.1
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 92.1
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 6.7e-76 287.3 147 94.6
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 6.7e-76 287.3 149 93.3
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 8.7e-76 287.0 144 96.5
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 8.7e-76 287.0 147 93.9
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.1e-75 286.6 152 90.8
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.1e-75 286.6 152 90.8
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.1e-75 286.6 152 90.8
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.5e-75 286.2 147 93.9
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.9e-75 285.8 147 93.2
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.9e-75 285.8 147 93.2
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 1.9e-75 285.8 147 93.2
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.9e-75 285.8 147 93.9
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 2.5e-75 285.4 147 93.2
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.5e-75 285.4 152 90.8
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 2.5e-75 285.4 152 90.1
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 3.3e-75 285.0 149 93.3
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.3e-75 285.0 148 91.9
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 4.3e-75 284.6 152 90.1
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 4.3e-75 284.6 152 90.1
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 4.3e-75 284.6 152 90.1
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 93.2
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 93.2
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 92.5
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 5.6e-75 284.3 147 93.2
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.6e-75 284.3 147 93.2
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.6e-75 284.3 147 93.2
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 5.6e-75 284.3 147 93.2
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 7.4e-75 283.9 147 91.8
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 7.4e-75 283.9 147 92.5
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 7.4e-75 283.9 152 90.1
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 7.4e-75 283.9 147 92.5
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 7.4e-75 283.9 147 92.5
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 7.4e-75 283.9 146 91.8
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 7.4e-75 283.9 146 91.8
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 9.6e-75 283.5 147 92.5
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 9.6e-75 283.5 147 92.5
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 9.6e-75 283.5 152 89.5
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 9.6e-75 283.5 152 89.5
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 9.6e-75 283.5 147 92.5
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 9.6e-75 283.5 144 94.4
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 9.6e-75 283.5 147 92.5
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 9.6e-75 283.5 147 92.5
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 89.5
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 2.1e-74 282.3 147 92.5
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.1e-74 282.3 147 91.2
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 2.8e-74 282.0 147 90.5
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.8e-74 282.0 152 90.1
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.8e-74 282.0 147 91.8
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 4.8e-74 281.2 152 89.5
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 6.2e-74 280.8 150 92.0
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 8.1e-74 280.4 152 88.8
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 8.1e-74 280.4 147 90.5
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.1e-73 278.5 152 89.5
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 4.0e-73 278.1 144 92.4
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.1
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.1
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.1
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.1
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.1
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.8
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 5.3e-73 277.7 147 89.1
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 5.3e-73 277.7 144 92.4
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 6.9e-73 277.3 147 91.2
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 9.0e-73 276.9 147 91.2
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 9.0e-73 276.9 147 89.1
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 1.2e-72 276.6 152 88.8
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-72 276.6 147 88.4
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 1.2e-72 276.6 147 89.1
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.5e-72 276.2 153 88.2
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.5e-72 276.2 144 91.0
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.5e-72 276.2 144 91.0
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.5e-72 276.2 144 91.7
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 2.0e-72 275.8 149 89.9
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 2.0e-72 275.8 149 89.9
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 2.0e-72 275.8 151 89.4
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.0e-72 275.8 143 91.6
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 2.6e-72 275.4 144 91.0
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.4e-72 275.0 152 88.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 4.5e-72 274.6 147 90.5
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 4.5e-72 274.6 147 90.5
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 5.8e-72 274.2 150 88.0
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 1.0e-71 273.5 147 89.1
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 1.0e-71 273.5 144 90.3
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.3e-71 273.1 149 89.3
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.3e-71 273.1 149 89.3
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.3e-71 273.1 151 86.8
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.3e-71 273.1 151 86.8
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.7e-71 272.7 148 88.5
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 2.2e-71 272.3 147 89.8
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 2.9e-71 271.9 147 89.8
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 4.9e-71 271.2 147 88.4
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 4.9e-71 271.2 147 88.4
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.4e-70 269.6 145 87.6
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.9e-70 269.2 147 87.8
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 2.1e-69 265.8 157 84.7
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.9e-69 263.8 134 94.8
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 7.9e-69 263.8 132 96.2
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 3.9e-68 261.5 140 90.0
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.1e-68 261.2 147 87.1
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 8.7e-68 260.4 143 87.4
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.3e-67 258.5 132 93.2
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.3e-66 256.5 132 93.2
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 4.8e-66 254.6 128 94.5
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.4e-65 253.1 134 91.0
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.8e-65 252.7 132 91.7
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 4.1e-65 251.5 134 89.6
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 1.5e-64 249.6 132 90.2
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 2.6e-64 248.8 132 90.2
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 2.6e-64 248.8 134 91.0
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 5.9e-64 247.7 127 92.1
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 5.9e-64 247.7 127 92.1
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.0e-63 246.9 127 92.1
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 1.7e-63 246.1 124 94.4
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 2.9e-63 245.4 134 88.8
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 5.0e-63 244.6 152 80.9
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 5.0e-63 244.6 127 90.6
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 8.5e-63 243.8 149 80.5
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 8.5e-63 243.8 149 80.5
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.1e-62 243.4 124 92.7
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.4e-62 243.0 128 89.8
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.9e-62 242.7 127 91.3
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 4.2e-62 241.5 141 80.9
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.2e-62 240.7 147 81.0
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 7.2e-62 240.7 144 82.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 9.3e-62 240.4 132 87.9
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 2.7e-61 238.8 142 82.4
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.5e-59 233.0 144 73.6
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 5.7e-59 231.1 145 72.4
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 1.4e-57 226.5 151 72.2
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 6.5e-55 217.6 157 71.3
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 1.0e-52 210.3 186 60.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.7e-50 203.0 116 82.8
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 2.8e-50 202.2 103 96.1
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 8.2e-50 200.7 119 80.7
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.4e-49 199.1 148 68.9
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 5.9e-48 194.5 103 91.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.9e-47 192.2 103 90.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 5.5e-46 188.0 116 75.0
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.7e-43 177.9 87 94.3
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 3.5e-40 168.7 115 77.4
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.5e-38 162.5 87 85.1
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 1.4e-36 156.8 80 91.2
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 2.0e-35 152.9 81 91.4
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.2e-34 149.4 142 59.2
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.2e-31 139.4 73 93.2
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 1.4e-28 130.2 69 82.6
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 9.8e-27 124.0 71 85.9
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.3e-26 120.9 71 84.5
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 4.1e-25 118.6 71 83.1
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 9.1e-25 117.5 76 76.3
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 3.3e-14 82.4 45 88.9
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.6e-13 79.0 46 82.6
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 8.0e-13 77.8 84 52.4


User provided reference genes

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