Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G450.4 Capsicum annuum HOM05D004176 ORTHO05D004845 9.9e-135 483.4 237 100.0
CAN.G289.28 Capsicum annuum HOM05D004176 ORTHO05D004845 1.4e-24 117.5 79 72.2
Peaxi162Scf00137g00128 Petunia axillaris HOM05D004176 ORTHO05D004845 2.1e-23 113.6 79 68.4
Nitab4.5_0007109g0030 Nicotiana tabacum HOM05D004176 ORTHO05D004845 2.7e-23 113.2 79 67.1
PGSC0003DMG400005056 Solanum tuberosum HOM05D004176 ORTHO05D004845 1.0e-22 111.3 79 65.8
Solyc03g006630.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 1.3e-22 110.9 79 67.1
Sopen03g002640 Solanum pennellii HOM05D004176 ORTHO05D004845 3.9e-22 109.4 79 65.8
Cc02_g12520 Coffea canephora HOM05D004176 ORTHO05D004845 1.1e-21 107.8 79 63.3
Peaxi162Scf00588g00910 Petunia axillaris HOM05D004176 ORTHO05D004845 1.1e-21 107.8 77 62.3
CAN.G1181.22 Capsicum annuum HOM05D004176 ORTHO05D004845 1.9e-21 107.1 76 61.8
Nitab4.5_0003465g0060 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.9e-21 107.1 79 63.3
Nitab4.5_0003574g0080 Nicotiana tabacum HOM05D004176 ORTHO05D004845 4.3e-21 105.9 79 60.8
Solyc02g079030.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 9.6e-21 104.8 76 60.5
Sopen02g023840 Solanum pennellii HOM05D004176 ORTHO05D004845 9.6e-21 104.8 76 60.5
PGSC0003DMG400022361 Solanum tuberosum HOM05D004176 ORTHO05D004845 9.6e-21 104.8 76 60.5
HanXRQChr01g0005541 Helianthus annuus HOM05D004176 ORTHO05D004845 2.8e-20 103.2 76 63.2
Actinidia05580 Actinidia chinensis HOM05D004176 ORTHO05D004845 4.7e-20 102.4 76 59.2
QL03p053022 Quercus lobata HOM05D004176 ORTHO05D004845 4.7e-20 102.4 76 59.2
QL05p081898 Quercus lobata HOM05D004176 ORTHO05D004845 4.7e-20 102.4 76 59.2
Lsat_1_v5_gn_1_126440 Lactuca sativa HOM05D004176 ORTHO05D004845 8.1e-20 101.7 82 57.3
Lj6g0015878 Lotus japonicus HOM05D004176 ORTHO05D004845 8.1e-20 101.7 76 59.2
ATR0693G103 Amborella trichopoda HOM05D004176 ORTHO05D004845 1.1e-19 101.3 74 64.9
GSVIVG01003211001 Vitis vinifera HOM05D004176 ORTHO05D004845 1.1e-19 101.3 76 59.2
Dinv39813 Davidia involucrata HOM05D004176 ORTHO05D004845 1.4e-19 100.9 76 60.5
Thecc.06G198200 Theobroma cacao HOM05D004176 ORTHO05D004845 1.4e-19 100.9 76 60.5
Gohir.A05G165100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 1.8e-19 100.5 91 53.8
Nn1g03915 Nelumbo nucifera HOM05D004176 ORTHO05D004845 1.8e-19 100.5 79 59.5
VMungo0251G0350 Vigna mungo HOM05D004176 ORTHO05D004845 2.4e-19 100.1 76 57.9
CSS0038663 Camellia sinensis var. sinensis HOM05D004176 ORTHO05D004845 3.1e-19 99.8 76 61.8
ECA248G3644 Erigeron canadensis HOM05D004176 ORTHO05D004845 3.1e-19 99.8 76 59.2
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 4.0e-19 99.4 74 60.8
Haze_06566 Corylus avellana HOM05D004176 ORTHO05D004845 4.0e-19 99.4 76 57.9
Dinv40500 Davidia involucrata HOM05D004176 ORTHO05D004845 4.0e-19 99.4 76 60.5
Sed0001897 Sechium edule HOM05D004176 ORTHO05D004845 4.0e-19 99.4 76 56.6
Gohir.D05G168100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 5.2e-19 99.0 76 60.5
Gorai.009G173200 Gossypium raimondii HOM05D004176 ORTHO05D004845 5.2e-19 99.0 76 60.5
Migut.M01205 Erythranthe guttata HOM05D004176 ORTHO05D004845 8.9e-19 98.2 73 60.3
Gohir.D10G021400 Gossypium hirsutum HOM05D004176 ORTHO05D004845 8.9e-19 98.2 76 61.8
Gorai.011G022500 Gossypium raimondii HOM05D004176 ORTHO05D004845 8.9e-19 98.2 76 61.8
Lalb_Chr20g0122261 Lupinus albus HOM05D004176 ORTHO05D004845 8.9e-19 98.2 76 56.6
TAR626G1911 Trochodendron aralioides HOM05D004176 ORTHO05D004845 8.9e-19 98.2 79 58.2
Atru.chr10.2000 Acer truncatum HOM05D004176 ORTHO05D004845 1.2e-18 97.8 104 49.0
MSTRG.15928 Avicennia marina HOM05D004176 ORTHO05D004845 1.2e-18 97.8 79 60.8
COL.COLO4_31573 Corchorus olitorius HOM05D004176 ORTHO05D004845 1.2e-18 97.8 76 59.2
Duzib235G1328 Durio zibethinus HOM05D004176 ORTHO05D004845 1.2e-18 97.8 76 60.5
Eucgr.E03472 Eucalyptus grandis HOM05D004176 ORTHO05D004845 1.2e-18 97.8 83 54.2
Psat1g208320 Pisum sativum HOM05D004176 ORTHO05D004845 1.2e-18 97.8 76 57.9
AT4G21534 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 1.5e-18 97.4 85 55.3
Ca_00256_v3 Cicer arietinum L. HOM05D004176 ORTHO05D004845 1.5e-18 97.4 76 56.6
HanXRQChr16g0517801 Helianthus annuus HOM05D004176 ORTHO05D004845 1.5e-18 97.4 76 60.5
Aqoxy1G02747 Aquilegia oxysepala HOM05D004176 ORTHO05D004845 2.0e-18 97.1 79 58.2
Medtr2g011820 Medicago truncatula HOM05D004176 ORTHO05D004845 2.0e-18 97.1 76 57.9
PSO675G5031 Papaver somniferum HOM05D004176 ORTHO05D004845 2.0e-18 97.1 79 57.0
TWI63G1567 Tripterygium wilfordii HOM05D004176 ORTHO05D004845 2.0e-18 97.1 76 57.9
TAR624G0327 Trochodendron aralioides HOM05D004176 ORTHO05D004845 2.0e-18 97.1 79 57.0
ECA234G4776 Erigeron canadensis HOM05D004176 ORTHO05D004845 2.6e-18 96.7 82 57.3
Lsat_1_v5_gn_4_57180 Lactuca sativa HOM05D004176 ORTHO05D004845 2.6e-18 96.7 82 58.5
MD05G1324800 Malus domestica HOM05D004176 ORTHO05D004845 2.6e-18 96.7 76 56.6
RcHm_v2.0_Chr5g0006561 Rosa chinensis HOM05D004176 ORTHO05D004845 2.6e-18 96.7 76 56.6
THA.LOC104806277 Tarenaya hassleriana HOM05D004176 ORTHO05D004845 2.6e-18 96.7 79 58.2
Phvul.002G222800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 3.4e-18 96.3 76 56.6
TPR.G36758 Trifolium pratense HOM05D004176 ORTHO05D004845 3.4e-18 96.3 76 55.3
Eucgr.E03468 Eucalyptus grandis HOM05D004176 ORTHO05D004845 4.4e-18 95.9 83 53.0
Gohir.A10G020600 Gossypium hirsutum HOM05D004176 ORTHO05D004845 4.4e-18 95.9 76 60.5
SGA_v2.0_scaffold1019G53794 Striga asiatica HOM05D004176 ORTHO05D004845 4.4e-18 95.9 74 58.1
MD10G1302700 Malus domestica HOM05D004176 ORTHO05D004845 5.8e-18 95.5 76 56.6
Glyma.15G067800 Glycine max HOM05D004176 ORTHO05D004845 7.6e-18 95.1 79 55.7
Manes.16G021200 Manihot esculenta HOM05D004176 ORTHO05D004845 7.6e-18 95.1 76 56.6
Oeu053937.2 Olea europaea HOM05D004176 ORTHO05D004845 7.6e-18 95.1 110 45.5
PGR042G0018 Punica granatum HOM05D004176 ORTHO05D004845 7.6e-18 95.1 83 55.4
Lalb_Chr05g0218191 Lupinus albus HOM05D004176 ORTHO05D004845 9.9e-18 94.7 76 56.6
Actinidia01934 Actinidia chinensis HOM05D004176 ORTHO05D004845 1.3e-17 94.4 70 61.4
CANSAT56G2709 Cannabis sativa HOM05D004176 ORTHO05D004845 1.3e-17 94.4 76 56.6
HPP92_001807 Vanilla planifolia HOM05D004176 ORTHO05D004845 1.3e-17 94.4 74 56.8
CARHR228200 Cardamine hirsuta HOM05D004176 ORTHO05D004845 1.7e-17 94.0 74 59.5
DCAR_024887 Daucus carota HOM05D004176 ORTHO05D004845 1.7e-17 94.0 76 56.6
Prupe.4G036200 Prunus persica HOM05D004176 ORTHO05D004845 1.7e-17 94.0 76 55.3
Sabra11G0030100 Salix brachista HOM05D004176 ORTHO05D004845 1.7e-17 94.0 74 56.8
Sp7g19660 Schrenkiella parvula HOM05D004176 ORTHO05D004845 1.7e-17 94.0 74 58.1
AL7G32490 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 2.2e-17 93.6 80 55.0
BcaC06g30667 Brassica carinata HOM05D004176 ORTHO05D004845 2.2e-17 93.6 74 58.1
A03p52810 Brassica napus HOM05D004176 ORTHO05D004845 2.2e-17 93.6 74 58.1
C03p83270 Brassica napus HOM05D004176 ORTHO05D004845 2.2e-17 93.6 85 51.8
C07p51250 Brassica napus HOM05D004176 ORTHO05D004845 2.2e-17 93.6 74 58.1
Glyma.08G058400 Glycine max HOM05D004176 ORTHO05D004845 2.2e-17 93.6 76 55.3
Sp7g19650 Schrenkiella parvula HOM05D004176 ORTHO05D004845 2.2e-17 93.6 77 58.4
BcaB03g11691 Brassica carinata HOM05D004176 ORTHO05D004845 2.9e-17 93.2 80 53.8
BcaNung00853 Brassica carinata HOM05D004176 ORTHO05D004845 2.9e-17 93.2 74 58.1
Cpa.g.sc1170.1 Carica papaya HOM05D004176 ORTHO05D004845 2.9e-17 93.2 76 57.9
Ciclev10015071m.g Citrus clementina HOM05D004176 ORTHO05D004845 2.9e-17 93.2 76 55.3
FvH4_3g04090 Fragaria vesca HOM05D004176 ORTHO05D004845 2.9e-17 93.2 76 53.9
FAN11G1228 Fragaria x ananassa HOM05D004176 ORTHO05D004845 2.9e-17 93.2 76 53.9
FAN16G2426 Fragaria x ananassa HOM05D004176 ORTHO05D004845 2.9e-17 93.2 76 53.9
FAN21G0123 Fragaria x ananassa HOM05D004176 ORTHO05D004845 2.9e-17 93.2 76 53.9
Potri.011G043500 Populus trichocarpa HOM05D004176 ORTHO05D004845 2.9e-17 93.2 74 56.8
Sc05g0008050 Simmondsia chinensis HOM05D004176 ORTHO05D004845 2.9e-17 93.2 81 58.0
Sc05g0010010 Simmondsia chinensis HOM05D004176 ORTHO05D004845 2.9e-17 93.2 81 58.0
vmacro03824 Vaccinium macrocarpon HOM05D004176 ORTHO05D004845 2.9e-17 93.2 80 56.2
BolC3t20608H Brassica oleracea HOM05D004176 ORTHO05D004845 3.8e-17 92.8 80 52.5
AUR62014726 Chenopodium quinoa HOM05D004176 ORTHO05D004845 3.8e-17 92.8 75 56.0
AUR62016908 Chenopodium quinoa HOM05D004176 ORTHO05D004845 3.8e-17 92.8 75 56.0
FAN25G2335 Fragaria x ananassa HOM05D004176 ORTHO05D004845 3.8e-17 92.8 76 53.9
Lalb_Chr18g0059921 Lupinus albus HOM05D004176 ORTHO05D004845 3.8e-17 92.8 76 53.9
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 4.9e-17 92.4 76 56.6
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 4.9e-17 92.4 76 56.6
BcaC01g00694 Brassica carinata HOM05D004176 ORTHO05D004845 4.9e-17 92.4 85 50.6
Carub.0007s1988 Capsella rubella HOM05D004176 ORTHO05D004845 4.9e-17 92.4 80 53.8
A08p15120 Brassica napus HOM05D004176 ORTHO05D004845 6.4e-17 92.0 80 52.5
BraA08t33492Z Brassica rapa HOM05D004176 ORTHO05D004845 6.4e-17 92.0 80 52.5
Thhalv10025046m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 8.4e-17 91.7 74 55.4
Lj1A1212T59 Lonicera japonica HOM05D004176 ORTHO05D004845 8.4e-17 91.7 74 58.1
Hund23626 Selenicereus undatus HOM05D004176 ORTHO05D004845 8.4e-17 91.7 79 55.7
VMungo0540G2164 Vigna mungo HOM05D004176 ORTHO05D004845 8.4e-17 91.7 74 55.4
Ah.14g088950 Amaranthus hybridus HOM05D004176 ORTHO05D004845 1.1e-16 91.3 91 51.6
ClCG01G022660 Citrullus lanatus HOM05D004176 ORTHO05D004845 1.1e-16 91.3 76 53.9
Phvul.006G191800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 1.1e-16 91.3 77 54.5
MBI18_g07595_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D004845 1.9e-16 90.5 73 52.1
Carub.0007s1987 Capsella rubella HOM05D004176 ORTHO05D004845 3.2e-16 89.7 74 56.8
CARHR228210 Cardamine hirsuta HOM05D004176 ORTHO05D004845 3.2e-16 89.7 74 56.8
HPP92_014068 Vanilla planifolia HOM05D001107 ORTHO05D004845 4.2e-16 89.4 74 52.7
DCAR_028122 Daucus carota HOM05D004176 ORTHO05D004845 5.4e-16 89.0 79 53.2
SMO361G0397 Selaginella moellendorffii HOM05D004176 ORTHO05D004845 5.4e-16 89.0 80 48.8
MELO3C007311.2 Cucumis melo HOM05D004176 ORTHO05D004845 7.1e-16 88.6 76 52.6
CsaV3_6G049850 Cucumis sativus L. HOM05D004176 ORTHO05D004845 7.1e-16 88.6 76 52.6
BolC7t45624H Brassica oleracea HOM05D004176 ORTHO05D004845 9.3e-16 88.2 68 61.8
AT4G21540 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 1.2e-15 87.8 74 55.4
Zm00001eb106910 Zea mays HOM05D004176 ORTHO05D004845 1.2e-15 87.8 77 51.9
BraA03t14357Z Brassica rapa HOM05D004176 ORTHO05D004845 1.6e-15 87.4 68 60.3
CiPaw.09G158600 Carya illinoinensis HOM05D004176 ORTHO05D004845 1.6e-15 87.4 76 52.6
HPP92_000922 Vanilla planifolia HOM05D004176 ORTHO05D004845 1.6e-15 87.4 77 51.9
AL7G32480 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 3.5e-15 86.3 74 55.4
Zm00001eb324260 Zea mays HOM05D004176 ORTHO05D004845 4.6e-15 85.9 77 50.6
Thhalv10025052m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 1.3e-14 84.3 74 55.4
Nn1g06749 Nelumbo nucifera HOM05D004176 ORTHO05D004845 1.3e-14 84.3 93 46.2
Os01g0782200 Oryza sativa ssp. japonica HOM05D004176 ORTHO05D004845 3.0e-14 83.2 83 47.0
Nitab4.5_0021410g0010 Nicotiana tabacum HOM05D004176 ORTHO05D004845 7.3e-13 78.6 55 61.8
SEGI_19486 Sequoiadendron giganteum HOM05D004176 ORTHO05D004845 2.4e-11 73.6 57 56.1
Mapoly0139s0005 Marchantia polymorpha HOM05D004176 ORTHO05D004845 2.0e-10 70.5 68 44.1
Pp3c10_6970 Physcomitrium patens HOM05D004176 ORTHO05D004845 2.0e-10 70.5 78 46.2
Pp3c1_27360 Physcomitrium patens HOM05D004176 ORTHO05D004845 2.0e-10 70.5 78 44.9
Zm00001eb135180 Zea mays HOM05D004176 ORTHO05D004845 2.0e-10 70.5 53 50.9
Zm00001eb367080 Zea mays HOM05D004176 ORTHO05D004845 2.0e-10 70.5 53 50.9
CAN.G491.5 Capsicum annuum HOM05D004176 ORTHO05D004845 3.4e-10 69.7 63 57.1
Zm00001eb309690 Zea mays HOM05D004176 ORTHO05D004845 9.9e-10 68.2 52 50.0
CDE05G0007 Ceratophyllum demersum HOM05D004176 ORTHO05D004845 2.9e-09 66.6 53 52.8
unitig_37.g12341 Utricularia gibba HOM05D004176 ORTHO05D001465 6.6e-06 55.5 45 55.6


User provided reference genes

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